FC921303

Overview
NameFC921303
Unique NameFC921303
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA_VIGAC (Glutamine synthetase nodule isozyme OS=Vigna aconitifolia PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 4.310e-62
Identity = 102/134 (76.12%), Postives = 120/134 (89.55%), Query Frame = 3
Query:  285 LEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQ 686
            L DL+NL+++  T+KIIAEYIWIGG+G+D+RSK++T+  PV  PS+LPKWNYDGSSTGQAPGEDSEVI+YPQAIFKDPFR GNNILV+CD YTPAGEPIPTNKRH AA+IFS+  V AE PW+GIEQEYTLLQ+
Sbjct:    4 LSDLINLNLSDTTEKIIAEYIWIGGSGLDLRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVIIYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHNAAKIFSHPDVVAEEPWYGIEQEYTLLQK 137          

HSP 2 Score: 35.039 bits (79), Expect = 4.310e-62
Identity = 12/19 (63.16%), Postives = 14/19 (73.68%), Query Frame = 2
Query:  674 LTSTNVKWPLGWPVGAYPG 730
            L   +V WPLGWPVG +PG
Sbjct:  134 LLQKDVNWPLGWPVGGFPG 152          
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA1_ALNGL (Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 4.310e-62
Identity = 101/134 (75.37%), Postives = 119/134 (88.81%), Query Frame = 3
Query:  285 LEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQ 686
            L DL+NL+++  TDK+IAEYIWIGG+G D+RSK++T++ PV HPS+LPKWNYDGSSTGQAPGEDSEVI   +  FKDPFR GNNILVICDTYTPAGEPIPTNKRH AA+IFS+ +V AEVPW+GIEQEYTLLQ+
Sbjct:    4 LSDLINLNLSDATDKVIAEYIWIGGSGTDLRSKARTLTGPVNHPSKLPKWNYDGSSTGQAPGEDSEVIYILRQFFKDPFRRGNNILVICDTYTPAGEPIPTNKRHGAAKIFSHPEVVAEVPWYGIEQEYTLLQK 137          

HSP 2 Score: 38.5058 bits (88), Expect = 4.310e-62
Identity = 14/19 (73.68%), Postives = 15/19 (78.95%), Query Frame = 2
Query:  674 LTSTNVKWPLGWPVGAYPG 730
            L   +VKWPLGWPVG YPG
Sbjct:  134 LLQKDVKWPLGWPVGGYPG 152          
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA_LUPLU (Glutamine synthetase nodule isozyme OS=Lupinus luteus PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 7.327e-62
Identity = 103/134 (76.87%), Postives = 122/134 (91.04%), Query Frame = 3
Query:  285 LEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQ 686
            L DL+NL+++  T+KIIAEYIW+GG+G+D+RSK++T+S PV  PS+LPKWNYDGSSTGQAPG+DSEVIL+PQAIFKDPFR GNNILV+CDTYTPAGEPIPTNKRH AA+IFS+  V AE PWFGIEQEYTLLQ+
Sbjct:    4 LSDLINLNLSDTTEKIIAEYIWVGGSGVDLRSKARTLSGPVNDPSKLPKWNYDGSSTGQAPGKDSEVILWPQAIFKDPFRRGNNILVMCDTYTPAGEPIPTNKRHAAAKIFSHPDVVAEEPWFGIEQEYTLLQK 137          

HSP 2 Score: 32.3426 bits (72), Expect = 7.327e-62
Identity = 9/19 (47.37%), Postives = 14/19 (73.68%), Query Frame = 2
Query:  674 LTSTNVKWPLGWPVGAYPG 730
            L   ++ WP+GWP+G +PG
Sbjct:  134 LLQKDIHWPIGWPLGGFPG 152          
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA_LACSA (Glutamine synthetase OS=Lactuca sativa PE=2 SV=2)

HSP 1 Score: 224.172 bits (570), Expect = 1.246e-61
Identity = 104/134 (77.61%), Postives = 120/134 (89.55%), Query Frame = 3
Query:  285 LEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQ 686
            L DL+NLD++  TDKIIAEYIWIGG+G+D+RSK++T+S PV  PSELPKWNYDGSSTGQAPGEDSEVI+YPQAIFKDPFR GN+ILV+CD YTPAGEPIPTNKR  AA+IFSN +V  EV W+GIEQEYTLLQ+
Sbjct:    4 LSDLVNLDLSSITDKIIAEYIWIGGSGMDLRSKARTLSGPVSDPSELPKWNYDGSSTGQAPGEDSEVIIYPQAIFKDPFRRGNHILVMCDAYTPAGEPIPTNKRAAAAKIFSNPEVEKEVTWYGIEQEYTLLQK 137          

HSP 2 Score: 32.3426 bits (72), Expect = 1.246e-61
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = 2
Query:  674 LTSTNVKWPLGWPVGAYPG 730
            L   +  WPLGWP+G +PG
Sbjct:  134 LLQKDTNWPLGWPLGGFPG 152          
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA3_MAIZE (Glutamine synthetase root isozyme 3 OS=Zea mays GN=GLN4 PE=1 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.246e-61
Identity = 103/134 (76.87%), Postives = 123/134 (91.79%), Query Frame = 3
Query:  285 LEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQ 686
            L DL+NL+++  T+KIIAEYIWIGG+G+D+RSK++T+S PV  PS+LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR GNNILV+CD YTPAGEPIPTNKR+ AA+IFS+ +V+AE PW+GIEQEYTLLQ+
Sbjct:    4 LTDLVNLNLSDTTEKIIAEYIWIGGSGMDLRSKARTLSGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDCYTPAGEPIPTNKRYNAAKIFSSPEVAAEEPWYGIEQEYTLLQK 137          

HSP 2 Score: 33.113 bits (74), Expect = 1.246e-61
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = 2
Query:  674 LTSTNVKWPLGWPVGAYPG 730
            L   +  WPLGWP+G +PG
Sbjct:  134 LLQKDTNWPLGWPIGGFPG 152          
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA3_PHAVU (Glutamine synthetase N-1 OS=Phaseolus vulgaris GN=Gln-gamma PE=2 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 1.624e-61
Identity = 99/137 (72.26%), Postives = 124/137 (90.51%), Query Frame = 3
Query:  276 VNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQ 686
            ++ + DL+NL+++  T+++IAEYIW+GG+G+DMRSK++T+S PV+ PS+LPKWNYDGSSTGQAPG+DSEVILYPQ IF+DPFR GNNILV+CD YTPAGEPIPTNKRH AA+IFSN +V AE PW+GIEQEYTLLQ+
Sbjct:    1 MSSISDLVNLNLSDSTERVIAEYIWVGGSGMDMRSKARTLSGPVKDPSKLPKWNYDGSSTGQAPGQDSEVILYPQTIFRDPFRRGNNILVMCDAYTPAGEPIPTNKRHNAAKIFSNPEVVAEEPWYGIEQEYTLLQK 137          

HSP 2 Score: 33.113 bits (74), Expect = 1.624e-61
Identity = 10/19 (52.63%), Postives = 15/19 (78.95%), Query Frame = 2
Query:  674 LTSTNVKWPLGWPVGAYPG 730
            L   +V+WP+GWP+G +PG
Sbjct:  134 LLQKDVQWPVGWPLGGFPG 152          
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLN14_ARATH (Glutamine synthetase cytosolic isozyme 1-4 OS=Arabidopsis thaliana GN=GLN1-4 PE=1 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 2.118e-61
Identity = 101/137 (73.72%), Postives = 120/137 (87.59%), Query Frame = 3
Query:  276 VNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQ 686
            ++ L DL+NLD++  TD+IIAEYIWIGG+G+DMRSK++T+  PV  PS+LPKWNYDGSSTGQAPG+DSEVI+YPQAIFKDPFR GNNILV+CD YTPAGEPIPTNKRH AA+IF +  V AE  W+GIEQEYTLLQ+
Sbjct:    1 MSSLADLINLDLSDSTDQIIAEYIWIGGSGLDMRSKARTLPGPVTDPSQLPKWNYDGSSTGQAPGDDSEVIIYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFEDPSVVAEETWYGIEQEYTLLQK 137          

HSP 2 Score: 35.4242 bits (80), Expect = 2.118e-61
Identity = 11/19 (57.89%), Postives = 15/19 (78.95%), Query Frame = 2
Query:  674 LTSTNVKWPLGWPVGAYPG 730
            L   ++KWP+GWPVG +PG
Sbjct:  134 LLQKDIKWPVGWPVGGFPG 152          
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA2_SOYBN (Glutamine synthetase cytosolic isozyme 2 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 2.761e-61
Identity = 99/134 (73.88%), Postives = 122/134 (91.04%), Query Frame = 3
Query:  285 LEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQ 686
            L DL+NL+++  TDK+IAEYIW+GG+G+DMRSK++T+S PV+ PS+LPKWNYDGSSTGQAPG+DSEVILYPQAIFKDPFR G+NILV+CD YTPAGEPIPTNKR+ AA+IF +  V+AE PW+G+EQEYTLLQ+
Sbjct:    4 LSDLINLNLSDITDKVIAEYIWVGGSGMDMRSKARTLSGPVKDPSKLPKWNYDGSSTGQAPGQDSEVILYPQAIFKDPFRRGSNILVMCDAYTPAGEPIPTNKRNNAAKIFGHPDVAAEEPWYGLEQEYTLLQK 137          

HSP 2 Score: 34.2686 bits (77), Expect = 2.761e-61
Identity = 11/19 (57.89%), Postives = 15/19 (78.95%), Query Frame = 2
Query:  674 LTSTNVKWPLGWPVGAYPG 730
            L   +V+WPLGWP+G +PG
Sbjct:  134 LLQKDVQWPLGWPLGGFPG 152          
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA3_PEA (Glutamine synthetase root isozyme A OS=Pisum sativum GN=GS3A PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 3.600e-61
Identity = 99/137 (72.26%), Postives = 122/137 (89.05%), Query Frame = 3
Query:  276 VNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQ 686
            ++ L DL+N +++  T+KIIAEYIW+GG+GID+RSK++T+  PV  P++LPKWNYDGSST QAPG+DSEVILYPQAIFKDPFR GNNILVICD YTPAGEP+PTNKR+ AA+IFS+  V+AEVPW+GIEQEYTLLQ+
Sbjct:    1 MSSLSDLINFNLSDSTEKIIAEYIWVGGSGIDIRSKARTLPGPVSDPAKLPKWNYDGSSTNQAPGKDSEVILYPQAIFKDPFRRGNNILVICDVYTPAGEPLPTNKRYNAAKIFSHPDVAAEVPWYGIEQEYTLLQK 137          

HSP 2 Score: 35.8094 bits (81), Expect = 3.600e-61
Identity = 11/19 (57.89%), Postives = 14/19 (73.68%), Query Frame = 2
Query:  674 LTSTNVKWPLGWPVGAYPG 730
            L   ++ WPLGWP+G YPG
Sbjct:  134 LLQKDINWPLGWPIGGYPG 152          
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA4_PEA (Glutamine synthetase root isozyme B OS=Pisum sativum GN=GS3B PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 4.694e-61
Identity = 99/137 (72.26%), Postives = 122/137 (89.05%), Query Frame = 3
Query:  276 VNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQ 686
            ++ L DL+N +++  T+KIIAEYIW+GG+GID+RSK++T+  PV  P++LPKWNYDGSST QAPG+DSEVILYPQAIFKDPFR GNNILVICD YTPAGEP+PTNKR+ AA+IFS+  V+AEVPW+GIEQEYTLLQ+
Sbjct:    1 MSSLSDLINFNLSDSTEKIIAEYIWVGGSGIDIRSKARTLPGPVSDPAKLPKWNYDGSSTDQAPGKDSEVILYPQAIFKDPFRRGNNILVICDVYTPAGEPLPTNKRYNAAKIFSHPDVAAEVPWYGIEQEYTLLQK 137          

HSP 2 Score: 35.8094 bits (81), Expect = 4.694e-61
Identity = 11/19 (57.89%), Postives = 14/19 (73.68%), Query Frame = 2
Query:  674 LTSTNVKWPLGWPVGAYPG 730
            L   ++ WPLGWP+G YPG
Sbjct:  134 LLQKDINWPLGWPIGGYPG 152          
The following BLAST results are available for this feature:
BLAST of FC921303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
GLNA_VIGAC4.310e-6276.12Glutamine synthetase nodule isozyme OS=Vigna aconi... [more]
GLNA1_ALNGL4.310e-6275.37Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE... [more]
GLNA_LUPLU7.327e-6276.87Glutamine synthetase nodule isozyme OS=Lupinus lut... [more]
GLNA_LACSA1.246e-6177.61Glutamine synthetase OS=Lactuca sativa PE=2 SV=2[more]
GLNA3_MAIZE1.246e-6176.87Glutamine synthetase root isozyme 3 OS=Zea mays GN... [more]
GLNA3_PHAVU1.624e-6172.26Glutamine synthetase N-1 OS=Phaseolus vulgaris GN=... [more]
GLN14_ARATH2.118e-6173.72Glutamine synthetase cytosolic isozyme 1-4 OS=Arab... [more]
GLNA2_SOYBN2.761e-6173.88Glutamine synthetase cytosolic isozyme 2 OS=Glycin... [more]
GLNA3_PEA3.600e-6172.26Glutamine synthetase root isozyme A OS=Pisum sativ... [more]
GLNA4_PEA4.694e-6172.26Glutamine synthetase root isozyme B OS=Pisum sativ... [more]

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Properties
Property NameValue
Genbank descriptionC32103D09EF RVDevelopN Citrus clementina cDNA clone C32103D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921303 ID=FC921303; Name=FC921303; organism=Citrus clementina; type=EST; length=731bp
GGGAGTCTTCTCTTCTTTCTTTCTAATCGGACCCTGCAGCAGATCAGCAT
TTTGGTTTTACTCTTCAACCAATTTTCAGGGAGGAGTAGGTGAAAATGGC
GCAGATTTTGGCACCTTCTATGCAATGGCAGATGAGGATGCCTAAGTACT
CAAACATTGCAAGTCCTATGACAACAAAGATGTGGAGTTCTCTGTTGATG
AAGCAGAACAAGAAAGGAACAAATAGGAGTTCTGCCAAGTTTAGAGTGCT
TGCTTTGAAATCTGAAGACAGCACTGTCAATAGGCTAGAGGATCTACTCA
ATTTGGACATCACTCCATATACTGACAAAATCATTGCCGAATATATTTGG
ATTGGAGGTACTGGGATTGATATGCGTAGCAAGTCAAAGACCATTTCAAA
GCCTGTTGAGCATCCATCTGAGCTTCCCAAGTGGAATTATGATGGATCAA
GTACTGGACAGGCACCTGGTGAAGATAGTGAAGTAATTTTATACCCTCAA
GCAATTTTTAAGGACCCCTTCCGTGGAGGAAACAACATCTTGGTAATTTG
TGATACCTACACACCAGCAGGCGAGCCCATCCCTACAAACAAACGCCATA
GGGCTGCTGAAATTTTCAGTAACTCGAAAGTGTCTGCTGAAGTTCCATGG
TTTGGGATAGAGCAAGAGTACACCTTACTTCAACAAATGTGAAATGGCCT
CTGGGTTGGCCTGTTGGAGCCTATCCTGGTC
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