FC921303 | Citrus Genome Database

Overview


Name	FC921303
Unique Name	FC921303
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	731

Libraries


Library Name	Type
RVDevelopN	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA4_MAIZE (Glutamine synthetase root isozyme 4 OS=Zea mays GN=GLN5 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 6.121e-61
Identity = 102/134 (76.12%), Postives = 122/134 (91.04%), Query Frame = 3

Query:  285 LEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQ 686
            L DL+NL+++  T+KIIAEYIWIGG+G+D+RSK++T+  PV  PS+LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR GNNILV+CD YTPAGEPIPTNKR+ AA+IFS+ +V+AE PW+GIEQEYTLLQ+
Sbjct:    4 LTDLVNLNLSDTTEKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDCYTPAGEPIPTNKRYSAAKIFSSPEVAAEEPWYGIEQEYTLLQK 137

HSP 2 Score: 33.113 bits (74), Expect = 6.121e-61
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = 2

Query:  674 LTSTNVKWPLGWPVGAYPG 730
            L   +  WPLGWP+G +PG
Sbjct:  134 LLQKDTNWPLGWPIGGFPG 152

[Close]

BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA3_MEDSA (Glutamine synthetase nodule isozyme OS=Medicago sativa GN=GS1 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 7.981e-61
Identity = 99/134 (73.88%), Postives = 121/134 (90.30%), Query Frame = 3

Query:  285 LEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQ 686
            L DL+NL+++  ++KIIAEYIW+GG+G+D+RSK++T+  PV  P++LPKWNYDGSST QAPG+DSEVILYPQAIFKDPFR GNNILVICD YTPAGEP+PTNKRH AA+IFS+  V+AEVPW+GIEQEYTLLQ+
Sbjct:    4 LSDLINLNLSESSEKIIAEYIWVGGSGMDLRSKARTLPGPVSDPAKLPKWNYDGSSTNQAPGQDSEVILYPQAIFKDPFRQGNNILVICDVYTPAGEPLPTNKRHNAAKIFSHPDVAAEVPWYGIEQEYTLLQK 137

HSP 2 Score: 33.113 bits (74), Expect = 7.981e-61
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = 2

Query:  674 LTSTNVKWPLGWPVGAYPG 730
            L   +  WPLGWP+G +PG
Sbjct:  134 LLQKDTNWPLGWPIGGFPG 152

[Close]

BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA2_PHAVU (Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 7.981e-61
Identity = 99/134 (73.88%), Postives = 121/134 (90.30%), Query Frame = 3

Query:  285 LEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQ 686
            L DL+NL+++  T+KIIAEYIW+GG+G+D+RSK++T+  PV+ P++LPKWNYDGSST QAPG+DSEVILYPQAIFKDPFR GNNILVICD YTPAGEP+PTNKR+ AA+IFS+  V AEVPW+GIEQEYTLLQ+
Sbjct:    4 LSDLINLNLSESTEKIIAEYIWVGGSGMDLRSKARTLPGPVDDPAKLPKWNYDGSSTDQAPGDDSEVILYPQAIFKDPFRRGNNILVICDVYTPAGEPLPTNKRYDAAKIFSHPDVVAEVPWYGIEQEYTLLQK 137

HSP 2 Score: 35.4242 bits (80), Expect = 7.981e-61
Identity = 12/19 (63.16%), Postives = 14/19 (73.68%), Query Frame = 2

Query:  674 LTSTNVKWPLGWPVGAYPG 730
            L   +V WPLGWP+G YPG
Sbjct:  134 LLQKDVNWPLGWPLGGYPG 152

[Close]

BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLN12_ORYSJ (Glutamine synthetase cytosolic isozyme 1-2 OS=Oryza sativa subsp. japonica GN=GLN1-2 PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 1.357e-60
Identity = 100/134 (74.63%), Postives = 119/134 (88.81%), Query Frame = 3

Query:  285 LEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQ 686
            L DL+NL+++  +DKIIAEYIW+GG+GID+RSK++T+  P+   S+LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR G+NILV+CD YTP GEPIPTNKRH AA+IFS+  V AEVPW+GIEQEYTLLQ+
Sbjct:    4 LTDLVNLNLSDCSDKIIAEYIWVGGSGIDLRSKARTVKGPITDVSQLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGDNILVMCDCYTPQGEPIPTNKRHSAAKIFSHPDVVAEVPWYGIEQEYTLLQK 137

HSP 2 Score: 35.039 bits (79), Expect = 1.357e-60
Identity = 12/19 (63.16%), Postives = 14/19 (73.68%), Query Frame = 2

Query:  674 LTSTNVKWPLGWPVGAYPG 730
            L   +V WPLGWPVG +PG
Sbjct:  134 LLQKDVNWPLGWPVGGFPG 152

[Close]

BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLN13_ARATH (Glutamine synthetase cytosolic isozyme 1-3 OS=Arabidopsis thaliana GN=GLN1-3 PE=1 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.769e-60
Identity = 100/134 (74.63%), Postives = 118/134 (88.06%), Query Frame = 3

Query:  285 LEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQ 686
            L DL+NL++T  T KIIAEYIWIGG+G+D+RSK++T+  PV  PS+LPKWNYDGSSTGQA GEDSEVILYPQAIFKDPFR GNNILV+CD YTPAG+PIPTNKRH AA+IFS+  V+ E PW+GIEQEYTL+Q+
Sbjct:    4 LSDLVNLNLTDATGKIIAEYIWIGGSGMDIRSKARTLPGPVTDPSKLPKWNYDGSSTGQAAGEDSEVILYPQAIFKDPFRKGNNILVMCDAYTPAGDPIPTNKRHNAAKIFSHPDVAKEEPWYGIEQEYTLMQK 137

HSP 2 Score: 35.8094 bits (81), Expect = 1.769e-60
Identity = 12/19 (63.16%), Postives = 14/19 (73.68%), Query Frame = 2

Query:  674 LTSTNVKWPLGWPVGAYPG 730
            L   +V WP+GWPVG YPG
Sbjct:  134 LMQKDVNWPIGWPVGGYPG 152

[Close]

BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA3_HORVU (Glutamine synthetase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 2.306e-60
Identity = 101/134 (75.37%), Postives = 117/134 (87.31%), Query Frame = 3

Query:  285 LEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQ 686
            L DLLNLD++  T+KIIAEYIWIGG+G+D+RSK++ +  PV HPS+LPKWNYDGSSTGQAPGEDSEVILYPQAI KDPFR GNNILV+CD YTP GEPIPTNKR+ AA+I SN  V+ E PW+GIEQEYTLLQ+
Sbjct:    4 LTDLLNLDLSGSTEKIIAEYIWIGGSGMDLRSKARHLPGPVTHPSKLPKWNYDGSSTGQAPGEDSEVILYPQAILKDPFREGNNILVMCDCYTPRGEPIPTNKRYNAAKILSNPDVAKEEPWYGIEQEYTLLQK 137

HSP 2 Score: 34.6538 bits (78), Expect = 2.306e-60
Identity = 11/19 (57.89%), Postives = 14/19 (73.68%), Query Frame = 2

Query:  674 LTSTNVKWPLGWPVGAYPG 730
            L   ++ WPLGWPVG +PG
Sbjct:  134 LLQKDINWPLGWPVGGFPG 152

[Close]

BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA1_PEA (Glutamine synthetase nodule isozyme OS=Pisum sativum GN=GS1 PE=2 SV=2)

HSP 1 Score: 216.083 bits (549), Expect = 6.666e-60
Identity = 99/134 (73.88%), Postives = 118/134 (88.06%), Query Frame = 3

Query:  285 LEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQ 686
            L DL+NLD++  T+KIIAEYIWIGG+G+D+R K++T+  PV  PSELPKWNYDGSSTGQAPG+DSEVILYPQAIFKDPFR GN+ILV+CD Y+PAGEPIPTNKRH AA++FS+  V AE  W+GIEQEYTLLQ+
Sbjct:    3 LSDLINLDLSGTTEKIIAEYIWIGGSGLDLRCKARTLPGPVTDPSELPKWNYDGSSTGQAPGQDSEVILYPQAIFKDPFRRGNHILVMCDAYSPAGEPIPTNKRHAAAKVFSHPDVVAEETWYGIEQEYTLLQK 136

HSP 2 Score: 34.6538 bits (78), Expect = 6.666e-60
Identity = 11/19 (57.89%), Postives = 13/19 (68.42%), Query Frame = 2

Query:  674 LTSTNVKWPLGWPVGAYPG 730
            L   ++ WPLGWP G YPG
Sbjct:  133 LLQKDINWPLGWPAGGYPG 151

[Close]

BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA3_LUPAN (Glutamine synthetase nodule isozyme (Fragment) OS=Lupinus angustifolius PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 1.928e-59
Identity = 102/134 (76.12%), Postives = 123/134 (91.79%), Query Frame = 3

Query:  285 LEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQ 686
            L DL+NL+++  T+KIIAEYIW+GG+G+D+RSK++T+S PV  PS+LPKWNYDGSSTGQAPG+DSEVIL+PQAIFKDPFR GNNILVICDTYTP+G+PIPTNKRH AA+IFS+  V+AE PWFGIEQEYTLLQ+
Sbjct:    4 LSDLINLNLSDTTEKIIAEYIWVGGSGVDLRSKARTLSGPVNDPSKLPKWNYDGSSTGQAPGKDSEVILWPQAIFKDPFRRGNNILVICDTYTPSGKPIPTNKRHAAAKIFSHPDVAAEEPWFGIEQEYTLLQK 137

HSP 2 Score: 24.6386 bits (52), Expect = 1.928e-59
Identity = 7/19 (36.84%), Postives = 12/19 (63.16%), Query Frame = 2

Query:  674 LTSTNVKWPLGWPVGAYPG 730
            L   ++ WP+G  +G +PG
Sbjct:  134 LLQKDIHWPIGMALGGFPG 152

[Close]

BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLN13_ORYSJ (Glutamine synthetase cytosolic isozyme 1-3 OS=Oryza sativa subsp. japonica GN=GLN1-3 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 4.646e-58
Identity = 95/134 (70.90%), Postives = 116/134 (86.57%), Query Frame = 3

Query:  285 LEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQ 686
            L DL+NLD++  TDK+IAEYIW+GGTG+D+RSK++T+S PV+ PS+LPKWN+DGSSTGQA G+DSEVIL+PQAIF+DPFR G NILV+CD Y P GEPIPTN R+ AA IFS+  V AE PW+GIEQEYTLLQ+
Sbjct:    6 LTDLVNLDLSESTDKVIAEYIWVGGTGMDVRSKARTLSGPVDDPSKLPKWNFDGSSTGQATGDDSEVILHPQAIFRDPFRKGKNILVMCDCYAPNGEPIPTNNRYNAARIFSHPDVKAEEPWYGIEQEYTLLQK 139

HSP 2 Score: 35.039 bits (79), Expect = 4.646e-58
Identity = 11/19 (57.89%), Postives = 14/19 (73.68%), Query Frame = 2

Query:  674 LTSTNVKWPLGWPVGAYPG 730
            L   ++ WPLGWP+G YPG
Sbjct:  136 LLQKHINWPLGWPLGGYPG 154

[Close]

BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA1_SOYBN (Glutamine synthetase cytosolic isozyme 1 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 1.030e-57
Identity = 97/134 (72.39%), Postives = 115/134 (85.82%), Query Frame = 3

Query:  285 LEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQ 686
            L DL+NL+++  T+K+IAEYIWIGG+G+D+RSK++T+  PV  PSELPKWNYDGSSTGQAPGEDSE I Y    F+DPFR GNNILVICD YTPAGEPIPTNKRH AA++FS+  V AEVPW+GIEQEYTLLQ+
Sbjct:    4 LSDLINLNLSDTTEKVIAEYIWIGGSGMDLRSKARTLPGPVSDPSELPKWNYDGSSTGQAPGEDSEAI-YTHKPFQDPFRRGNNILVICDAYTPAGEPIPTNKRHAAAKVFSHPDVVAEVPWYGIEQEYTLLQK 136

HSP 2 Score: 35.039 bits (79), Expect = 1.030e-57
Identity = 11/19 (57.89%), Postives = 15/19 (78.95%), Query Frame = 2

Query:  674 LTSTNVKWPLGWPVGAYPG 730
            L   +++WPLGWPVG +PG
Sbjct:  133 LLQKDIQWPLGWPVGGFPG 151

The following BLAST results are available for this feature:

BLAST of FC921303 vs. ExPASy Swiss-Prot

BLAST of FC921303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85


Match Name	E-value	Identity	Description
GLNA4_MAIZE	6.121e-61	76.12	Glutamine synthetase root isozyme 4 OS=Zea mays GN...	[more]
GLNA3_MEDSA	7.981e-61	73.88	Glutamine synthetase nodule isozyme OS=Medicago sa...	[more]
GLNA2_PHAVU	7.981e-61	73.88	Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE...	[more]
GLN12_ORYSJ	1.357e-60	74.63	Glutamine synthetase cytosolic isozyme 1-2 OS=Oryz...	[more]
GLN13_ARATH	1.769e-60	74.63	Glutamine synthetase cytosolic isozyme 1-3 OS=Arab...	[more]
GLNA3_HORVU	2.306e-60	75.37	Glutamine synthetase OS=Hordeum vulgare PE=2 SV=1	[more]
GLNA1_PEA	6.666e-60	73.88	Glutamine synthetase nodule isozyme OS=Pisum sativ...	[more]
GLNA3_LUPAN	1.928e-59	76.12	Glutamine synthetase nodule isozyme (Fragment) OS=...	[more]
GLN13_ORYSJ	4.646e-58	70.90	Glutamine synthetase cytosolic isozyme 1-3 OS=Oryz...	[more]
GLNA1_SOYBN	1.030e-57	72.39	Glutamine synthetase cytosolic isozyme 1 OS=Glycin...	[more]

Pages

Properties


Property Name	Value
Genbank description	C32103D09EF RVDevelopN Citrus clementina cDNA clone C32103D09, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC921303 ID=FC921303; Name=FC921303; organism=Citrus clementina; type=EST; length=731bp
GGGAGTCTTCTCTTCTTTCTTTCTAATCGGACCCTGCAGCAGATCAGCAT
TTTGGTTTTACTCTTCAACCAATTTTCAGGGAGGAGTAGGTGAAAATGGC
GCAGATTTTGGCACCTTCTATGCAATGGCAGATGAGGATGCCTAAGTACT
CAAACATTGCAAGTCCTATGACAACAAAGATGTGGAGTTCTCTGTTGATG
AAGCAGAACAAGAAAGGAACAAATAGGAGTTCTGCCAAGTTTAGAGTGCT
TGCTTTGAAATCTGAAGACAGCACTGTCAATAGGCTAGAGGATCTACTCA
ATTTGGACATCACTCCATATACTGACAAAATCATTGCCGAATATATTTGG
ATTGGAGGTACTGGGATTGATATGCGTAGCAAGTCAAAGACCATTTCAAA
GCCTGTTGAGCATCCATCTGAGCTTCCCAAGTGGAATTATGATGGATCAA
GTACTGGACAGGCACCTGGTGAAGATAGTGAAGTAATTTTATACCCTCAA
GCAATTTTTAAGGACCCCTTCCGTGGAGGAAACAACATCTTGGTAATTTG
TGATACCTACACACCAGCAGGCGAGCCCATCCCTACAAACAAACGCCATA
GGGCTGCTGAAATTTTCAGTAACTCGAAAGTGTCTGCTGAAGTTCCATGG
TTTGGGATAGAGCAAGAGTACACCTTACTTCAACAAATGTGAAATGGCCT
CTGGGTTGGCCTGTTGGAGCCTATCCTGGTC