FC921303

Overview
NameFC921303
Unique NameFC921303
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLN15_ARATH (Glutamine synthetase cytosolic isozyme 1-5 OS=Arabidopsis thaliana GN=GLN1-5 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 2.282e-57
Identity = 96/134 (71.64%), Postives = 115/134 (85.82%), Query Frame = 3
Query:  285 LEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQ 686
            L DLLNLD++  T KIIAEYIWIGG+G+D+RSK++T+  PV +P++LPKWNYDGSST QA G+DSEVILYPQAIFKDPFR GNNILV+CD Y PAG+PIPTN RH+A +IF +  V AE PWFGIEQEYTLL++
Sbjct:    5 LSDLLNLDLSD-TKKIIAEYIWIGGSGMDIRSKARTLPGPVSNPTKLPKWNYDGSSTDQAAGDDSEVILYPQAIFKDPFRKGNNILVMCDAYRPAGDPIPTNNRHKAVKIFDHPNVKAEEPWFGIEQEYTLLKK 137          

HSP 2 Score: 35.8094 bits (81), Expect = 2.282e-57
Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = 2
Query:  674 LTSTNVKWPLGWPVGAYPG 730
            L   +VKWPLGWP+G +PG
Sbjct:  134 LLKKDVKWPLGWPLGGFPG 152          
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA2_MAIZE (Glutamine synthetase root isozyme 2 OS=Zea mays GN=GLN2 PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.461e-56
Identity = 96/134 (71.64%), Postives = 117/134 (87.31%), Query Frame = 3
Query:  285 LEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQ 686
            L DL+NLD++  T KIIAEYIW+GG+G+D+RSK++T+S PV+ PS+LPKWN+DGSSTGQAPG+DSEVIL P+AIF+DPFR G NILV+CD Y P GEPIP+NKRH AA+IFS+  V AE PWFGIEQEYTLLQ+
Sbjct:    4 LSDLINLDLSGRTGKIIAEYIWVGGSGMDVRSKARTLSGPVDDPSKLPKWNFDGSSTGQAPGDDSEVILCPRAIFRDPFRKGQNILVMCDCYEPNGEPIPSNKRHGAAKIFSHPDVKAEEPWFGIEQEYTLLQK 137          

HSP 2 Score: 30.4166 bits (67), Expect = 1.461e-56
Identity = 12/19 (63.16%), Postives = 14/19 (73.68%), Query Frame = 2
Query:  674 LTSTNVKWPLGWPVGAYPG 730
            L   + KWPLGWP+ AYPG
Sbjct:  134 LLQKDTKWPLGWPL-AYPG 151          
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA_PINSY (Glutamine synthetase cytosolic isozyme OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 1.728e-54
Identity = 91/134 (67.91%), Postives = 110/134 (82.09%), Query Frame = 3
Query:  285 LEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQ 686
            L DLLNLD++  T+K+IAEYIWIGG+G+DMRSK++++S PV    ELPKWNYDGSSTGQA G DSEVILYPQAIF+DPFR G +ILVICD Y+P G  IP+NKR  AA+IF+   VS E  W+G+EQEYTLLQ+
Sbjct:    5 LTDLLNLDLSDVTEKVIAEYIWIGGSGMDMRSKARSLSGPVSSVKELPKWNYDGSSTGQAQGHDSEVILYPQAIFRDPFRRGKHILVICDAYSPNGTAIPSNKRAAAAKIFNEKAVSDEETWYGLEQEYTLLQK 138          

HSP 2 Score: 38.1206 bits (87), Expect = 1.728e-54
Identity = 13/19 (68.42%), Postives = 15/19 (78.95%), Query Frame = 2
Query:  674 LTSTNVKWPLGWPVGAYPG 730
            L   +VKWPLGWP+G YPG
Sbjct:  135 LLQKDVKWPLGWPIGGYPG 153          
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA1_DAUCA (Glutamine synthetase cytosolic isozyme OS=Daucus carota GN=GLN1 PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 4.993e-54
Identity = 97/134 (72.39%), Postives = 117/134 (87.31%), Query Frame = 3
Query:  285 LEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQ 686
            L DL+NLD++  TDK IAEYIWI   G  +RSK++T+S PV+ P++LPKWN+DGSSTGQ PG+DSEVI+YPQAIFKDPFR GN+ILV+CDTYTPAGEPIPTNKR  AA+IFS+  V+AEVPWFGIEQEYTLL++
Sbjct:    4 LTDLINLDLSDTTDKFIAEYIWIDAVG-GLRSKARTLSGPVDDPTKLPKWNFDGSSTGQGPGDDSEVIIYPQAIFKDPFRRGNHILVMCDTYTPAGEPIPTNKRCNAAKIFSHPDVAAEVPWFGIEQEYTLLKK 136          

HSP 2 Score: 23.8682 bits (50), Expect = 4.993e-54
Identity = 9/19 (47.37%), Postives = 10/19 (52.63%), Query Frame = 2
Query:  674 LTSTNVKWPLGWPVGAYPG 730
            L    V  P+G P G YPG
Sbjct:  133 LLKKEVNCPIGCPTGGYPG 151          
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA1_CHLRE (Glutamine synthetase cytosolic isozyme OS=Chlamydomonas reinhardtii GN=GLN1 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.259e-41
Identity = 79/134 (58.96%), Postives = 93/134 (69.40%), Query Frame = 3
Query:  309 ITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTP----------AGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLL 680
            +T    KI AEY+WIGG+  D+RSKS+T+S     P +LP WNYDGSSTGQAPG DSEV L P++IFKDPFRGG+NILV+CD Y P          A +PIPTN R   AE+   +K   E PWFGIEQEYTLL
Sbjct:   31 VTDQQGKICAEYVWIGGSMHDVRSKSRTLSTIPTKPEDLPHWNYDGSSTGQAPGHDSEVYLIPRSIFKDPFRGGDNILVMCDCYEPPKVNPDGTLAAPKPIPTNTRFACAEVMEKAK--KEEPWFGIEQEYTLL 162          

HSP 2 Score: 31.5722 bits (70), Expect = 2.259e-41
Identity = 11/18 (61.11%), Postives = 12/18 (66.67%), Query Frame = 2
Query:  674 LTSTNVKWPLGWPVGAYP 727
            L +   KWPLGWP G YP
Sbjct:  161 LLNAITKWPLGWPKGGYP 178          
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA_HEBCY (Glutamine synthetase OS=Hebeloma cylindrosporum GN=GLN1 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.120e-33
Identity = 69/121 (57.02%), Postives = 85/121 (70.25%), Query Frame = 3
Query:  315 PYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTL 677
            P  DKI AEY+W+ G G  +RSK+ T+SK V     L  W++DGSST QAPG DS+V L P AIFKDPFRGG+NILV+ +TY   G P  TN RH AA++   +K   +VPWFG+EQEYTL
Sbjct:   17 PQGDKIQAEYVWVDGDG-GLRSKTTTVSKKVTDIGSLRIWDFDGSSTNQAPGHDSDVYLRPAAIFKDPFRGGDNILVLAETYNSDGTPNRTNFRHHAAKVMEQAK--EDVPWFGLEQEYTL 134          

HSP 2 Score: 23.8682 bits (50), Expect = 1.120e-33
Identity = 7/11 (63.64%), Postives = 8/11 (72.73%), Query Frame = 2
Query:  698 PLGWPVGAYPG 730
            P GWP G +PG
Sbjct:  141 PYGWPKGGFPG 151          
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA2_DROME (Glutamine synthetase 2 cytoplasmic OS=Drosophila melanogaster GN=Gs2 PE=2 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 2.474e-33
Identity = 69/123 (56.10%), Postives = 83/123 (67.48%), Query Frame = 3
Query:  315 PYTDKII-AEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLL 680
            P  + I+ A Y+WI GTG D+R K +T+    + P ELP WNYDGSS  QA G +S+  LYP AI+KDPFR GNNILV+CDTY   G P  TNKR    E+   +K +AE PWFGIEQEYT L
Sbjct:   26 PLQENIVQATYVWIDGTGEDLRCKDRTLDFIPQSPKELPVWNYDGSSCYQAEGSNSDTYLYPVAIYKDPFRRGNNILVMCDTYKFDGTPTDTNKRKTCLEV--ANKCAAEEPWFGIEQEYTFL 146          

HSP 2 Score: 23.483 bits (49), Expect = 2.474e-33
Identity = 7/11 (63.64%), Postives = 8/11 (72.73%), Query Frame = 2
Query:  698 PLGWPVGAYPG 730
            PLGWP   +PG
Sbjct:  152 PLGWPKNGFPG 162          
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA_PANAR (Glutamine synthetase OS=Panulirus argus PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.048e-32
Identity = 66/132 (50.00%), Postives = 92/132 (69.70%), Query Frame = 3
Query:  285 LEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLL 680
            L+  L LDI     K  A YIW+ GTG ++RSK++T++   + PSELP WN+DGSSTGQA   +S+V LYP A+++DPFR GNN LV+C+TY    +P  TN+R +  E+   ++ + + PWFG+EQEYTLL
Sbjct:   10 LDRYLRLDIPD--QKCQAMYIWVDGTGENLRSKTRTLNFTPKSPSELPIWNFDGSSTGQAERSNSDVYLYPVAVYRDPFRLGNNKLVLCETYKYNKKPADTNQRWKCMEVM--TRAADQHPWFGMEQEYTLL 137          

HSP 2 Score: 26.1794 bits (56), Expect = 2.048e-32
Identity = 9/13 (69.23%), Postives = 9/13 (69.23%), Query Frame = 2
Query:  692 KWPLGWPVGAYPG 730
            K PLGWP   YPG
Sbjct:  141 KHPLGWPKNGYPG 153          
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA_AGABI (Glutamine synthetase OS=Agaricus bisporus GN=glnA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 2.668e-32
Identity = 67/118 (56.78%), Postives = 82/118 (69.49%), Query Frame = 3
Query:  324 DKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTL 677
            DKI AEY+WI G G  +R K+ T+SK V    +L  W++DGSST QAPG DS+V L P AIFKDPFRGG+NILV+ +TY   G P  TN RH A ++F  +K     PWFG+EQEYTL
Sbjct:   20 DKIQAEYVWIDGDG-GLRCKTTTVSKKVTDIGQLRIWDFDGSSTNQAPGHDSDVYLRPAAIFKDPFRGGDNILVLAETYNNDGTPNRTNHRHHAKKVFDEAK--EHEPWFGLEQEYTL 134          

HSP 2 Score: 23.8682 bits (50), Expect = 2.668e-32
Identity = 7/11 (63.64%), Postives = 8/11 (72.73%), Query Frame = 2
Query:  698 PLGWPVGAYPG 730
            P GWP G +PG
Sbjct:  141 PYGWPKGGFPG 151          
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA_TUBBO (Glutamine synthetase OS=Tuber borchii GN=GLN1 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 6.345e-31
Identity = 72/143 (50.35%), Postives = 90/143 (62.94%), Query Frame = 3
Query:  261 SEDSTV----NRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTL 677
            SE+ST+      L   LNLD       I+AEYIWI G    +RSK+KT+ K      +LP+WN+DGSSTGQAPGEDS++ L P AIF DPFR G+NILV+ + +   G P   N RH  A+I    K   + PWFG+EQEYTL
Sbjct:    2 SENSTIVSNTANLVKFLNLD---QKGSILAEYIWIDGAN-GVRSKTKTLFKKPSSVEDLPEWNFDGSSTGQAPGEDSDIYLRPVAIFPDPFRMGDNILVLAECWNADGSPNKFNHRHECAKIMEAHK--DQKPWFGLEQEYTL 138          

HSP 2 Score: 23.8682 bits (50), Expect = 6.345e-31
Identity = 7/11 (63.64%), Postives = 8/11 (72.73%), Query Frame = 2
Query:  698 PLGWPVGAYPG 730
            P GWP G +PG
Sbjct:  145 PYGWPKGGFPG 155          
The following BLAST results are available for this feature:
BLAST of FC921303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
GLN15_ARATH2.282e-5771.64Glutamine synthetase cytosolic isozyme 1-5 OS=Arab... [more]
GLNA2_MAIZE1.461e-5671.64Glutamine synthetase root isozyme 2 OS=Zea mays GN... [more]
GLNA_PINSY1.728e-5467.91Glutamine synthetase cytosolic isozyme OS=Pinus sy... [more]
GLNA1_DAUCA4.993e-5472.39Glutamine synthetase cytosolic isozyme OS=Daucus c... [more]
GLNA1_CHLRE2.259e-4158.96Glutamine synthetase cytosolic isozyme OS=Chlamydo... [more]
GLNA_HEBCY1.120e-3357.02Glutamine synthetase OS=Hebeloma cylindrosporum GN... [more]
GLNA2_DROME2.474e-3356.10Glutamine synthetase 2 cytoplasmic OS=Drosophila m... [more]
GLNA_PANAR2.048e-3250.00Glutamine synthetase OS=Panulirus argus PE=2 SV=1[more]
GLNA_AGABI2.668e-3256.78Glutamine synthetase OS=Agaricus bisporus GN=glnA ... [more]
GLNA_TUBBO6.345e-3150.35Glutamine synthetase OS=Tuber borchii GN=GLN1 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionC32103D09EF RVDevelopN Citrus clementina cDNA clone C32103D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921303 ID=FC921303; Name=FC921303; organism=Citrus clementina; type=EST; length=731bp
GGGAGTCTTCTCTTCTTTCTTTCTAATCGGACCCTGCAGCAGATCAGCAT
TTTGGTTTTACTCTTCAACCAATTTTCAGGGAGGAGTAGGTGAAAATGGC
GCAGATTTTGGCACCTTCTATGCAATGGCAGATGAGGATGCCTAAGTACT
CAAACATTGCAAGTCCTATGACAACAAAGATGTGGAGTTCTCTGTTGATG
AAGCAGAACAAGAAAGGAACAAATAGGAGTTCTGCCAAGTTTAGAGTGCT
TGCTTTGAAATCTGAAGACAGCACTGTCAATAGGCTAGAGGATCTACTCA
ATTTGGACATCACTCCATATACTGACAAAATCATTGCCGAATATATTTGG
ATTGGAGGTACTGGGATTGATATGCGTAGCAAGTCAAAGACCATTTCAAA
GCCTGTTGAGCATCCATCTGAGCTTCCCAAGTGGAATTATGATGGATCAA
GTACTGGACAGGCACCTGGTGAAGATAGTGAAGTAATTTTATACCCTCAA
GCAATTTTTAAGGACCCCTTCCGTGGAGGAAACAACATCTTGGTAATTTG
TGATACCTACACACCAGCAGGCGAGCCCATCCCTACAAACAAACGCCATA
GGGCTGCTGAAATTTTCAGTAACTCGAAAGTGTCTGCTGAAGTTCCATGG
TTTGGGATAGAGCAAGAGTACACCTTACTTCAACAAATGTGAAATGGCCT
CTGGGTTGGCCTGTTGGAGCCTATCCTGGTC
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