FC921303

Overview
NameFC921303
Unique NameFC921303
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA_SUIBO (Glutamine synthetase OS=Suillus bovinus GN=GLNA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.401e-30
Identity = 64/118 (54.24%), Postives = 82/118 (69.49%), Query Frame = 3
Query:  324 DKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTL 677
            DK+ AEY+WI G G  +RSK+ T++K      +L  W++DGSST QAPG DS+V L P AIFKDPFRGG+NILV+ +T+   G P  TN RH   ++   +K S  VPWFG+EQEYTL
Sbjct:   20 DKVQAEYVWIDGDG-GLRSKTMTMTKKTTDIGQLRIWDFDGSSTNQAPGGDSDVYLRPAAIFKDPFRGGDNILVLAETFNNDGTPNRTNHRHHTKKVMDLAKDS--VPWFGLEQEYTL 134          

HSP 2 Score: 24.2534 bits (51), Expect = 1.401e-30
Identity = 7/11 (63.64%), Postives = 8/11 (72.73%), Query Frame = 2
Query:  698 PLGWPVGAYPG 730
            P GWP G +PG
Sbjct:  141 PFGWPKGGFPG 151          
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA_AMAMU (Glutamine synthetase OS=Amanita muscaria GN=GLN1 PE=2 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 4.027e-30
Identity = 64/117 (54.70%), Postives = 80/117 (68.38%), Query Frame = 3
Query:  327 KIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTL 677
            K  AEY+WI G G  +RSK+ T+ + V   S+L  W++DGSST QAP  +S+V L P AIFKDPFRGG NILV+ +TY   G P  TN RH  A++   +K   E+PWFGIEQEYTL
Sbjct:   21 KFHAEYVWIDGDG-GLRSKTTTVDQKVTDISQLRVWDFDGSSTNQAPSGNSDVYLRPSAIFKDPFRGGENILVLSETYNNDGTPNRTNHRHHTAKVMELAK--DEIPWFGIEQEYTL 134          

HSP 2 Score: 23.8682 bits (50), Expect = 4.027e-30
Identity = 7/11 (63.64%), Postives = 8/11 (72.73%), Query Frame = 2
Query:  698 PLGWPVGAYPG 730
            P GWP G +PG
Sbjct:  141 PYGWPKGGFPG 151          
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA_EMENI (Glutamine synthetase OS=Emericella nidulans GN=glnA PE=3 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 8.893e-30
Identity = 61/117 (52.14%), Postives = 79/117 (67.52%), Query Frame = 3
Query:  330 IIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLL 680
            ++AEYIWI   G   RSK+KT+SK      ELP+WN+DGSST QAPG++S+V L P A++ DPFR G+NILV+C+T+   G P   N RH  A +      + E  WFG+EQEYTLL
Sbjct:   12 VMAEYIWIDAHG-GTRSKTKTLSKAPSSVDELPEWNFDGSSTAQAPGDNSDVYLRPVAMYPDPFRRGDNILVLCETWDSDGSPNKFNYRHDCARLMETH--AKEEFWFGLEQEYTLL 125          

HSP 2 Score: 28.1054 bits (61), Expect = 8.893e-30
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 2
Query:  695 WPLGWPVGAYPG 730
            WP GWP G +PG
Sbjct:  130 WPYGWPKGGFPG 141          
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA_NEUCR (Glutamine synthetase OS=Neurospora crassa GN=gln-1 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.937e-29
Identity = 69/144 (47.92%), Postives = 91/144 (63.19%), Query Frame = 3
Query:  255 LKSEDSTVNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEH--PSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLL 680
            + SE + ++  E+L      P   ++IAEYIWI   G   RSKS+T+ +      P ELP WN+DGSSTGQAPGE+S+V L P A+F DPFRG  NILV+ + +   G P   N RH AA++      + +VPWFG+EQEYTLL
Sbjct:    1 MASESTILSNAENLKKFLRLPQNGQLIAEYIWIDSEG-GTRSKSRTLPEKESQYLPEELPIWNFDGSSTGQAPGENSDVYLKPVAVFPDPFRGSPNILVLSECWNADGTPNKFNHRHEAAKLMEAH--ADQVPWFGLEQEYTLL 141          
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA_YEAST (Glutamine synthetase OS=Saccharomyces cerevisiae GN=GLN1 PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 9.554e-29
Identity = 65/131 (49.62%), Postives = 86/131 (65.65%), Query Frame = 3
Query:  285 LEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTL 677
            L+  L LD      +IIAEY+WI GTG ++RSK +T+ K +    +LP+WN+DGSST QAPG DS++ L P A + DPFR G+NI+V+   Y   G P   N RH AA++F+  K   E  WFG+EQEYTL
Sbjct:   12 LQKYLELD---QRGRIIAEYVWIDGTG-NLRSKGRTLKKRITSIDQLPEWNFDGSSTNQAPGHDSDIYLKPVAYYPDPFRRGDNIVVLAACYNNDGTPNKFNHRHEAAKLFAAHK--DEEIWFGLEQEYTL 136          

HSP 2 Score: 20.7866 bits (42), Expect = 9.554e-29
Identity = 6/8 (75.00%), Postives = 6/8 (75.00%), Query Frame = 2
Query:  704 GWPVGAYP 727
            GWP G YP
Sbjct:  145 GWPKGGYP 152          
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA_COLGL (Glutamine synthetase OS=Colletotrichum gloeosporioides GN=GLN1 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.620e-28
Identity = 67/137 (48.91%), Postives = 85/137 (62.04%), Query Frame = 3
Query:  270 STVNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLL 680
            S  N L   L LD       I+AEYIWI   G + RSKS+T+ +    P +LP WN+DGSSTGQAPG++S+V L P A+F DPFRG  NILV+ + +   G P   N RH  A++      +A  PWFG+EQEYTLL
Sbjct:    9 SNPNTLAKYLKLD---QKGSIMAEYIWIDADG-ETRSKSRTLKEKEYTPEDLPMWNFDGSSTGQAPGDNSDVYLKPVAVFPDPFRGSPNILVLSECWNADGTPNKYNYRHECAKLMEAH--AAHEPWFGLEQEYTLL 139          

HSP 2 Score: 20.4014 bits (41), Expect = 1.620e-28
Identity = 5/10 (50.00%), Postives = 6/10 (60.00%), Query Frame = 2
Query:  698 PLGWPVGAYP 727
            P GWP   +P
Sbjct:  145 PFGWPANGFP 154          
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA_CANGA (Glutamine synthetase OS=Candida glabrata GN=GLN1 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.142e-28
Identity = 61/127 (48.03%), Postives = 83/127 (65.35%), Query Frame = 3
Query:  315 PYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQM*N 695
            P   K+IAEY+W+ GTG ++RSK++T++K +    +LP+WN+DGSST QAPG DS++ L P A + DPFR G+NI V+ + +   G P   N RH A ++F   K   E  WFGIEQEYTL     N
Sbjct:   19 PQNGKVIAEYVWVDGTG-NLRSKARTLNKVITSIEQLPEWNFDGSSTNQAPGYDSDIYLKPVAFYPDPFRRGDNITVLAECFNSDGTPNKFNHRHEANKLFQAHK--DEEIWFGIEQEYTLFDMYDN 142          
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA_KLULA (Glutamine synthetase OS=Kluyveromyces lactis GN=GLN1 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.140e-28
Identity = 62/119 (52.10%), Postives = 81/119 (68.07%), Query Frame = 3
Query:  330 IIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQ 686
            IIAEY+WI   G  +RSK +T++K V     LP+WN+DGSSTGQAPG DS++ L P A + DPFR G+NI+V+ + +   G P   N RH AA++F   K  AE+ WFG+EQEYTL  Q
Sbjct:   26 IIAEYVWIDSEG-GLRSKGRTLNKKVTSVDSLPEWNFDGSSTGQAPGHDSDIYLKPVAFYPDPFRRGDNIVVLAECWNNDGTPNKFNHRHEAAKLFEAHK-DAEM-WFGLEQEYTLFDQ 141          
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA_ASHGO (Glutamine synthetase OS=Ashbya gossypii GN=GLN1 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.140e-28
Identity = 60/116 (51.72%), Postives = 82/116 (70.69%), Query Frame = 3
Query:  330 IIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTL 677
            +IAEYIW+   G  +RSK +T+ + VE   ELP+WN+DGSSTGQAPG DS+V L P A + DPFR G+NI+V+ + +   G P   N RH AA++F   + +A++ WFG+EQEYTL
Sbjct:   23 VIAEYIWVDSAG-HLRSKGRTLQRRVESVDELPEWNFDGSSTGQAPGHDSDVYLKPVAFYPDPFRRGDNIIVLAECWNNDGTPNKYNHRHEAAKLFEAHR-AADI-WFGLEQEYTL 135          
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA_YARLI (Glutamine synthetase OS=Yarrowia lipolytica GN=GLN1 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.466e-27
Identity = 59/127 (46.46%), Postives = 80/127 (62.99%), Query Frame = 3
Query:  315 PYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQM*N 695
            P    ++AEYIWI     ++RSK KT+ K      +LP+WN+DGSST QAPG DS++ L P AI+ DPFR G+NI+V+ + +   G P   N RH  A++ S  +   EV WFGIEQEYT+  +  N
Sbjct:   10 PQHGAVLAEYIWIDAH-FNIRSKCKTLDKKPTSIEDLPEWNFDGSSTDQAPGHDSDIYLRPAAIYPDPFRRGDNIIVLAECWNNDGTPNKFNHRHECAKLMSAHE--KEVIWFGIEQEYTMFDESDN 133          

HSP 2 Score: 22.3274 bits (46), Expect = 8.466e-27
Identity = 6/10 (60.00%), Postives = 8/10 (80.00%), Query Frame = 2
Query:  698 PLGWPVGAYP 727
            P+GWP G +P
Sbjct:  134 PVGWPKGGFP 143          
The following BLAST results are available for this feature:
BLAST of FC921303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
GLNA_SUIBO1.401e-3054.24Glutamine synthetase OS=Suillus bovinus GN=GLNA PE... [more]
GLNA_AMAMU4.027e-3054.70Glutamine synthetase OS=Amanita muscaria GN=GLN1 P... [more]
GLNA_EMENI8.893e-3052.14Glutamine synthetase OS=Emericella nidulans GN=gln... [more]
GLNA_NEUCR1.937e-2947.92Glutamine synthetase OS=Neurospora crassa GN=gln-1... [more]
GLNA_YEAST9.554e-2949.62Glutamine synthetase OS=Saccharomyces cerevisiae G... [more]
GLNA_COLGL1.620e-2848.91Glutamine synthetase OS=Colletotrichum gloeosporio... [more]
GLNA_CANGA2.142e-2848.03Glutamine synthetase OS=Candida glabrata GN=GLN1 P... [more]
GLNA_KLULA8.140e-2852.10Glutamine synthetase OS=Kluyveromyces lactis GN=GL... [more]
GLNA_ASHGO8.140e-2851.72Glutamine synthetase OS=Ashbya gossypii GN=GLN1 PE... [more]
GLNA_YARLI8.466e-2746.46Glutamine synthetase OS=Yarrowia lipolytica GN=GLN... [more]

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Properties
Property NameValue
Genbank descriptionC32103D09EF RVDevelopN Citrus clementina cDNA clone C32103D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921303 ID=FC921303; Name=FC921303; organism=Citrus clementina; type=EST; length=731bp
GGGAGTCTTCTCTTCTTTCTTTCTAATCGGACCCTGCAGCAGATCAGCAT
TTTGGTTTTACTCTTCAACCAATTTTCAGGGAGGAGTAGGTGAAAATGGC
GCAGATTTTGGCACCTTCTATGCAATGGCAGATGAGGATGCCTAAGTACT
CAAACATTGCAAGTCCTATGACAACAAAGATGTGGAGTTCTCTGTTGATG
AAGCAGAACAAGAAAGGAACAAATAGGAGTTCTGCCAAGTTTAGAGTGCT
TGCTTTGAAATCTGAAGACAGCACTGTCAATAGGCTAGAGGATCTACTCA
ATTTGGACATCACTCCATATACTGACAAAATCATTGCCGAATATATTTGG
ATTGGAGGTACTGGGATTGATATGCGTAGCAAGTCAAAGACCATTTCAAA
GCCTGTTGAGCATCCATCTGAGCTTCCCAAGTGGAATTATGATGGATCAA
GTACTGGACAGGCACCTGGTGAAGATAGTGAAGTAATTTTATACCCTCAA
GCAATTTTTAAGGACCCCTTCCGTGGAGGAAACAACATCTTGGTAATTTG
TGATACCTACACACCAGCAGGCGAGCCCATCCCTACAAACAAACGCCATA
GGGCTGCTGAAATTTTCAGTAACTCGAAAGTGTCTGCTGAAGTTCCATGG
TTTGGGATAGAGCAAGAGTACACCTTACTTCAACAAATGTGAAATGGCCT
CTGGGTTGGCCTGTTGGAGCCTATCCTGGTC
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