FC921303

Overview
NameFC921303
Unique NameFC921303
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA_CAEEL (Probable glutamine synthetase OS=Caenorhabditis elegans GN=gln-2 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.434e-26
Identity = 59/128 (46.09%), Postives = 79/128 (61.72%), Query Frame = 3
Query:  303 LDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQ 686
            L + P+  KI A Y+WI GTG ++RSK++T  K  +   + P WNYDGSSTGQA G DS+  L P A + DPF GG N LV+CDT     +P  T+ R   AEI    ++    PWFG+EQEY ++ +
Sbjct:   21 LGLRPHPTKIQATYVWIDGTGENLRSKTRTFDKLPKRIEDYPIWNYDGSSTGQAKGRDSDRYLRPVAAYPDPFLGGGNKLVMCDTLDHQMQPTATSHRQACAEIM--HEIRDTRPWFGMEQEYLIVDR 146          

HSP 2 Score: 20.4014 bits (41), Expect = 1.434e-26
Identity = 6/10 (60.00%), Postives = 7/10 (70.00%), Query Frame = 2
Query:  698 PLGWPVGAYP 727
            PLGWP   +P
Sbjct:  150 PLGWPKHGFP 159          
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA_DEBHA (Glutamine synthetase OS=Debaryomyces hansenii GN=GLN1 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.619e-26
Identity = 58/120 (48.33%), Postives = 78/120 (65.00%), Query Frame = 3
Query:  327 KIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQ 686
            K++AEY+WI   G + RSK KT+ K      +LP+WN+DGSSTGQAPG DS+V L P A + DPFR G+NI+V+ + +   G P   N RH +A++      + E  WFG+EQEYTL  Q
Sbjct:   22 KVLAEYVWIDADG-NSRSKCKTLDKKPSSVEDLPEWNFDGSSTGQAPGHDSDVYLRPVAFYADPFRKGDNIIVLTECWNNDGTPNKFNHRHESAKLMKAH--ADEEVWFGLEQEYTLFDQ 138          
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA1_DROME (Glutamine synthetase 1, mitochondrial OS=Drosophila melanogaster GN=Gs1 PE=2 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 2.619e-26
Identity = 63/133 (47.37%), Postives = 90/133 (67.67%), Query Frame = 3
Query:  285 LEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR-GGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLL 680
            L+   NL+ TP  +++ A Y+WI GTG ++R K + + K      +LP W YDGSST QA GE+S+  L P+AI++DPF+ G N+++V+CDTY+  G+P  +NK  RAA   +   +S + PWFGIEQEYTLL
Sbjct:   49 LQRYRNLE-TP-ANRVQATYLWIDGTGENIRLKDRVLDKVPSSVEDLPDWQYDGSSTYQAHGENSDTTLKPRAIYRDPFKPGKNDVIVLCDTYSADGKPTASNK--RAAFQAAIDLISDQEPWFGIEQEYTLL 177          
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA_SCHPO (Glutamine synthetase OS=Schizosaccharomyces pombe GN=gln1 PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 3.164e-26
Identity = 63/149 (42.28%), Postives = 89/149 (59.73%), Query Frame = 3
Query:  234 AKFRVLALKSEDSTVNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLL 680
            +++ V  L S+ + +N+  DL      P   K++AEYIWI G    +RSK+ T+        +L  WN+DGSSTGQAPG +S+ +L P A++ DPFR G+NILV+   YT  G P   N R   A++    K + +  WFGIEQEYT+L
Sbjct:    2 SQYDVEPLLSKAAILNKYADL------PQNGKVMAEYIWIDGFN-HLRSKTMTLDAKPSSIDQLRVWNFDGSSTGQAPGNNSDTLLKPVAMYNDPFRRGDNILVLAACYTADGSPNGFNHRDACAKLL--EKHADKETWFGIEQEYTML 141          

HSP 2 Score: 24.2534 bits (51), Expect = 3.164e-26
Identity = 7/11 (63.64%), Postives = 8/11 (72.73%), Query Frame = 2
Query:  698 PLGWPVGAYPG 730
            P GWP G +PG
Sbjct:  147 PFGWPKGGFPG 157          
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA_BOVIN (Glutamine synthetase OS=Bos taurus GN=GLUL PE=2 SV=4)

HSP 1 Score: 115.546 bits (288), Expect = 4.117e-26
Identity = 57/122 (46.72%), Postives = 77/122 (63.11%), Query Frame = 3
Query:  315 PYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLL 680
            P  DK+ A YIWI GTG  +R K++T+    +   ELP+WN+DGSST Q+ G +S++ L P A+F+DPFR   N LV C+ +    +P  TN RH    I     VS + PWFG+EQEYTL+
Sbjct:   21 PQGDKVQAMYIWIDGTGEGLRCKTRTLDSEPKCIEELPEWNFDGSSTFQSEGSNSDMYLVPAAMFRDPFRKDPNKLVFCEVFKYNRKPAETNLRHTCKRIM--DMVSNQRPWFGMEQEYTLM 140          

HSP 2 Score: 21.9422 bits (45), Expect = 4.117e-26
Identity = 6/11 (54.55%), Postives = 7/11 (63.64%), Query Frame = 2
Query:  698 PLGWPVGAYPG 730
            P GWP   +PG
Sbjct:  146 PFGWPSNGFPG 156          
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA_SQUAC (Glutamine synthetase, mitochondrial OS=Squalus acanthias PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.967e-26
Identity = 56/122 (45.90%), Postives = 79/122 (64.75%), Query Frame = 3
Query:  315 PYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLL 680
            P   K+ A YIWI GTG  +R K++T+    +  +ELP+WN+DGSST Q+ G +S++ L P A+F+DPFR   N LV+C+      +P  +N RH   +I   S ++ E PWFG+EQEYTLL
Sbjct:   50 PQDGKVQAMYIWIDGTGEAVRCKTRTLDNEPKSIAELPEWNFDGSSTYQSEGSNSDMYLVPSAMFRDPFRRDPNKLVLCEVLKYNRKPAESNLRHSCQKIM--SMIANEYPWFGMEQEYTLL 169          

HSP 2 Score: 21.9422 bits (45), Expect = 6.967e-26
Identity = 6/11 (54.55%), Postives = 7/11 (63.64%), Query Frame = 2
Query:  698 PLGWPVGAYPG 730
            P GWP   +PG
Sbjct:  175 PFGWPSNCFPG 185          
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA_CANFA (Glutamine synthetase OS=Canis familiaris GN=GLUL PE=1 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 6.974e-26
Identity = 56/122 (45.90%), Postives = 77/122 (63.11%), Query Frame = 3
Query:  315 PYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLL 680
            P  +K+ A YIWI GTG  +R K++T+    +   ELP+WN+DGSST Q+ G +S++ L P A+F+DPFR   N LV C+ +    +P  TN RH    I     VS + PWFG+EQEYTL+
Sbjct:   21 PQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKGVEELPEWNFDGSSTFQSEGSNSDMYLVPAAMFRDPFRKDPNKLVFCEVFKYNRKPAETNLRHTCKRIM--DMVSNQHPWFGMEQEYTLM 140          

HSP 2 Score: 21.9422 bits (45), Expect = 6.974e-26
Identity = 6/11 (54.55%), Postives = 7/11 (63.64%), Query Frame = 2
Query:  698 PLGWPVGAYPG 730
            P GWP   +PG
Sbjct:  146 PFGWPSNGFPG 156          
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA_HUMAN (Glutamine synthetase OS=Homo sapiens GN=GLUL PE=1 SV=4)

HSP 1 Score: 114.39 bits (285), Expect = 9.077e-26
Identity = 56/122 (45.90%), Postives = 77/122 (63.11%), Query Frame = 3
Query:  315 PYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLL 680
            P  +K+ A YIWI GTG  +R K++T+    +   ELP+WN+DGSST Q+ G +S++ L P A+F+DPFR   N LV+C+ +     P  TN RH    I     VS + PWFG+EQEYTL+
Sbjct:   21 PQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEWNFDGSSTLQSEGSNSDMYLVPAAMFRDPFRKDPNKLVLCEVFKYNRRPAETNLRHTCKRIM--DMVSNQHPWFGMEQEYTLM 140          

HSP 2 Score: 21.9422 bits (45), Expect = 9.077e-26
Identity = 6/11 (54.55%), Postives = 7/11 (63.64%), Query Frame = 2
Query:  698 PLGWPVGAYPG 730
            P GWP   +PG
Sbjct:  146 PFGWPSNGFPG 156          
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA_CRYNE (Glutamine synthetase OS=Cryptococcus neoformans GN=GLN1 PE=2 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 9.951e-26
Identity = 58/117 (49.57%), Postives = 78/117 (66.67%), Query Frame = 3
Query:  327 KIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTL 677
            ++ AEYIWI   G  +RSK+ T+ K     ++L +WN+DGSST QAP ++S+V L P AIFKDPFRGG NILV+C+ Y   G P  +N R    ++   +K +   PWFG+EQEYTL
Sbjct:   24 RVQAEYIWIDAEG-GIRSKTMTLDKAPSSVADLKEWNFDGSSTNQAPADNSDVFLRPVAIFKDPFRGGANILVLCECYDNDGTPNKSNYRAHCKKVMDAAKDTE--PWFGLEQEYTL 137          
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA_PIG (Glutamine synthetase OS=Sus scrofa GN=GLUL PE=2 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 1.181e-25
Identity = 56/122 (45.90%), Postives = 77/122 (63.11%), Query Frame = 3
Query:  315 PYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLL 680
            P  +K+ A YIWI GTG  +R K++T+    +   ELP+WN+DGSST Q+ G +S++ L P A+F+DPFR   N LV C+ +    +P  TN RH    I     VS + PWFG+EQEYTL+
Sbjct:   21 PQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCIEELPEWNFDGSSTFQSEGSNSDMYLVPAAMFRDPFRKDPNKLVFCEVFKYNRKPAETNLRHTCKRIM--DMVSNQHPWFGMEQEYTLM 140          

HSP 2 Score: 21.9422 bits (45), Expect = 1.181e-25
Identity = 6/11 (54.55%), Postives = 7/11 (63.64%), Query Frame = 2
Query:  698 PLGWPVGAYPG 730
            P GWP   +PG
Sbjct:  146 PFGWPSNGFPG 156          
The following BLAST results are available for this feature:
BLAST of FC921303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
GLNA_CAEEL1.434e-2646.09Probable glutamine synthetase OS=Caenorhabditis el... [more]
GLNA_DEBHA2.619e-2648.33Glutamine synthetase OS=Debaryomyces hansenii GN=G... [more]
GLNA1_DROME2.619e-2647.37Glutamine synthetase 1, mitochondrial OS=Drosophil... [more]
GLNA_SCHPO3.164e-2642.28Glutamine synthetase OS=Schizosaccharomyces pombe ... [more]
GLNA_BOVIN4.117e-2646.72Glutamine synthetase OS=Bos taurus GN=GLUL PE=2 SV... [more]
GLNA_SQUAC6.967e-2645.90Glutamine synthetase, mitochondrial OS=Squalus aca... [more]
GLNA_CANFA6.974e-2645.90Glutamine synthetase OS=Canis familiaris GN=GLUL P... [more]
GLNA_HUMAN9.077e-2645.90Glutamine synthetase OS=Homo sapiens GN=GLUL PE=1 ... [more]
GLNA_CRYNE9.951e-2649.57Glutamine synthetase OS=Cryptococcus neoformans GN... [more]
GLNA_PIG1.181e-2545.90Glutamine synthetase OS=Sus scrofa GN=GLUL PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionC32103D09EF RVDevelopN Citrus clementina cDNA clone C32103D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921303 ID=FC921303; Name=FC921303; organism=Citrus clementina; type=EST; length=731bp
GGGAGTCTTCTCTTCTTTCTTTCTAATCGGACCCTGCAGCAGATCAGCAT
TTTGGTTTTACTCTTCAACCAATTTTCAGGGAGGAGTAGGTGAAAATGGC
GCAGATTTTGGCACCTTCTATGCAATGGCAGATGAGGATGCCTAAGTACT
CAAACATTGCAAGTCCTATGACAACAAAGATGTGGAGTTCTCTGTTGATG
AAGCAGAACAAGAAAGGAACAAATAGGAGTTCTGCCAAGTTTAGAGTGCT
TGCTTTGAAATCTGAAGACAGCACTGTCAATAGGCTAGAGGATCTACTCA
ATTTGGACATCACTCCATATACTGACAAAATCATTGCCGAATATATTTGG
ATTGGAGGTACTGGGATTGATATGCGTAGCAAGTCAAAGACCATTTCAAA
GCCTGTTGAGCATCCATCTGAGCTTCCCAAGTGGAATTATGATGGATCAA
GTACTGGACAGGCACCTGGTGAAGATAGTGAAGTAATTTTATACCCTCAA
GCAATTTTTAAGGACCCCTTCCGTGGAGGAAACAACATCTTGGTAATTTG
TGATACCTACACACCAGCAGGCGAGCCCATCCCTACAAACAAACGCCATA
GGGCTGCTGAAATTTTCAGTAACTCGAAAGTGTCTGCTGAAGTTCCATGG
TTTGGGATAGAGCAAGAGTACACCTTACTTCAACAAATGTGAAATGGCCT
CTGGGTTGGCCTGTTGGAGCCTATCCTGGTC
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