FC921303

Overview
NameFC921303
Unique NameFC921303
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA_MOUSE (Glutamine synthetase OS=Mus musculus GN=Glul PE=1 SV=6)

HSP 1 Score: 113.62 bits (283), Expect = 1.538e-25
Identity = 55/122 (45.08%), Postives = 79/122 (64.75%), Query Frame = 3 
Query:  315 PYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLL 680
            P  +K+ A YIW+ GTG  +R K++T+    +   ELP+WN+DGSST Q+ G +S++ L+P A+F+DPFR   N LV+C+ +    +P  TN RH    I     VS + PWFG+EQEYTL+
Sbjct:   21 PQGEKVQAMYIWVDGTGEGLRCKTRTLDCEPKCVEELPEWNFDGSSTFQSEGSNSDMYLHPVAMFRDPFRKDPNKLVLCEVFKYNRKPAETNLRHICKRIM--DMVSNQHPWFGMEQEYTLM 140

HSP 2 Score: 21.9422 bits (45), Expect = 1.538e-25
Identity = 6/11 (54.55%), Postives = 7/11 (63.64%), Query Frame = 2 
Query:  698 PLGWPVGAYPG 730
            P GWP   +PG
Sbjct:  146 PFGWPSNGFPG 156
[Close]
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA_FUSSH (Glutamine synthetase OS=Fusarium solani subsp. phaseoli GN=GLN1 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.539e-25
Identity = 53/118 (44.92%), Postives = 77/118 (65.25%), Query Frame = 3 
Query:  327 KIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLL 680
            +I+AEY+W+   G + RSKS+T+ +      +LP WN+DGSST QAPG++S+V L P A++ DPFRG  NI+V+ + +   G P   N RH   ++      + + PWFG+EQEYTLL
Sbjct:   25 QIMAEYVWVDAAG-ETRSKSRTLPEKDYKAEDLPVWNFDGSSTNQAPGDNSDVYLRPCAVYPDPFRGSPNIIVLAECWNAGGTPNKFNFRHDCVKVMDT--YAEDEPWFGLEQEYTLL 139

HSP 2 Score: 22.3274 bits (46), Expect = 1.539e-25
Identity = 6/10 (60.00%), Postives = 7/10 (70.00%), Query Frame = 2 
Query:  698 PLGWPVGAYP 727
            P GWP G +P
Sbjct:  145 PYGWPTGGFP 154
[Close]
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA_RAT (Glutamine synthetase OS=Rattus norvegicus GN=Glul PE=1 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 2.001e-25
Identity = 55/122 (45.08%), Postives = 78/122 (63.93%), Query Frame = 3 
Query:  315 PYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLL 680
            P  +KI   YIW+ GTG  +R K++T+    +   ELP+WN+DGSST Q+ G +S++ L+P A+F+DPFR   N LV C+ +    +P  TN RH    I     VS++ PWFG+EQEYTL+
Sbjct:   21 PQGEKIQLMYIWVDGTGEGLRCKTRTLDCDPKCVEELPEWNFDGSSTFQSEGSNSDMYLHPVAMFRDPFRRDPNKLVFCEVFKYNRKPAETNLRHSCKRIM--DMVSSQHPWFGMEQEYTLM 140

HSP 2 Score: 21.9422 bits (45), Expect = 2.001e-25
Identity = 6/11 (54.55%), Postives = 7/11 (63.64%), Query Frame = 2 
Query:  698 PLGWPVGAYPG 730
            P GWP   +PG
Sbjct:  146 PFGWPSNGFPG 156
[Close]
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA_CHICK (Glutamine synthetase OS=Gallus gallus GN=GLUL PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.605e-25
Identity = 56/122 (45.90%), Postives = 77/122 (63.11%), Query Frame = 3 
Query:  315 PYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLL 680
            P  +K+ A YIWI GTG  +R K++T+    +   +LP+WN+DGSST QA G +S++ L P A+F+DPFR   N LV+C+ +    +   TN RH    I     VS + PWFG+EQEYTLL
Sbjct:   21 PQGEKVQAMYIWIDGTGEHLRCKTRTLDHEPKSLEDLPEWNFDGSSTFQAEGSNSDMYLRPAAMFRDPFRKDPNKLVLCEVFKYNRQSADTNLRHTCRRIM--DMVSNQHPWFGMEQEYTLL 140

HSP 2 Score: 21.9422 bits (45), Expect = 2.605e-25
Identity = 6/11 (54.55%), Postives = 7/11 (63.64%), Query Frame = 2 
Query:  698 PLGWPVGAYPG 730
            P GWP   +PG
Sbjct:  146 PFGWPSNCFPG 156
[Close]
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA_MACFA (Glutamine synthetase OS=Macaca fascicularis GN=GLUL PE=2 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 3.390e-25
Identity = 57/123 (46.34%), Postives = 79/123 (64.23%), Query Frame = 3 
Query:  315 PYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGE-PIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLL 680
            P  +K+ A YIWI GTG  +R K++T+    +   ELP+WN+DGSST Q+ G +S++ L P A+F+DPFR   N LV+C+++    E P  TN RH    I     VS + PWFG+EQEYTL+
Sbjct:   21 PQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEWNFDGSSTLQSEGSNSDMYLVPAAMFRDPFRKDPNKLVLCESFQVQFEGPAETNLRHTCKRIM--DMVSNQHPWFGMEQEYTLM 141

HSP 2 Score: 21.9422 bits (45), Expect = 3.390e-25
Identity = 6/11 (54.55%), Postives = 7/11 (63.64%), Query Frame = 2 
Query:  698 PLGWPVGAYPG 730
            P GWP   +PG
Sbjct:  147 PFGWPSNGFPG 157
[Close]
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA_MIMIV (Putative glutamine synthetase OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R565 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.781e-25
Identity = 59/122 (48.36%), Postives = 79/122 (64.75%), Query Frame = 3 
Query:  333 IAEYIWIGGTGIDMRSKSKTISKPVEHP---SELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGG-NNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQ 686
            I EY+WIGG G ++RSK++ +   +      S++P WNYDGSST QA G  SEV LYP+ I++ PFR   N ++VICDTY   G P+ TN RH A  IF   K   E PW+G+EQEY + ++
Sbjct:   20 IIEYVWIGGNG-ELRSKTRVLYSSIMTGYKLSDIPVWNYDGSSTNQANGSSSEVFLYPRNIYRCPFRRNVNGVIVICDTYDVNGVPLETNHRHNANIIF--EKYQNEKPWYGLEQEYFIFRK 138
[Close]
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA_ACOCA (Glutamine synthetase OS=Acomys cahirinus GN=GLUL PE=2 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 5.743e-25
Identity = 55/122 (45.08%), Postives = 77/122 (63.11%), Query Frame = 3 
Query:  315 PYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLL 680
            P  +K+ A YIW+ GTG  +R K++T+    +   ELP+WN+DGSST Q+ G +S++ L P A+F+DPFR   N LV C+ +    +P  TN RH    I     VS + PWFG+EQEYTL+
Sbjct:   21 PQGEKVQAMYIWVDGTGEGLRCKTRTLDCEPKCVEELPEWNFDGSSTFQSEGSNSDMYLSPVAMFRDPFRKEPNKLVFCEVFKYNRKPAETNLRHSCKRIM--DMVSNQHPWFGMEQEYTLM 140

HSP 2 Score: 21.9422 bits (45), Expect = 5.743e-25
Identity = 6/11 (54.55%), Postives = 7/11 (63.64%), Query Frame = 2 
Query:  698 PLGWPVGAYPG 730
            P GWP   +PG
Sbjct:  146 PFGWPSNGFPG 156
[Close]
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA_CRIGR (Glutamine synthetase OS=Cricetulus griseus GN=GLUL PE=2 SV=4)

HSP 1 Score: 110.153 bits (274), Expect = 2.144e-24
Identity = 55/122 (45.08%), Postives = 76/122 (62.30%), Query Frame = 3 
Query:  315 PYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLL 680
            P  +K+ A YIW+ GTG  +R K++T+    +   ELP+WN+DGSST Q+   +S++ L P A+F+DPFR   N LV C+ +    +P  TN RH    I     VS + PWFG+EQEYTLL
Sbjct:   21 PQGEKVQAMYIWVDGTGEGLRCKTRTLDCEPKCVEELPEWNFDGSSTFQSESSNSDMYLSPVAMFRDPFRKEPNKLVFCEVFKYNQKPAETNLRHTCKRIM--DMVSNQHPWFGMEQEYTLL 140

HSP 2 Score: 21.557 bits (44), Expect = 2.144e-24
Identity = 6/11 (54.55%), Postives = 7/11 (63.64%), Query Frame = 2 
Query:  698 PLGWPVGAYPG 730
            P GWP   +PG
Sbjct:  146 PFGWPSDGFPG 156
[Close]
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA_GIBFU (Glutamine synthetase OS=Gibberella fujikuroi GN=GLN1 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.146e-24
Identity = 58/137 (42.34%), Postives = 81/137 (59.12%), Query Frame = 3 
Query:  270 STVNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLL 680
            S    L+  L LD       I+AEY+W+   G   RSKS+T+ +    P +LP WN+DGSST QAPG++S+V L P A++ DPFRG  NI+V+ + +   G P   N RH   ++      + + P FG+EQEYTLL
Sbjct:    7 SRTETLQKYLKLD---QKGMIMAEYVWVDADG-GTRSKSRTLPEKEYKPEDLPVWNFDGSSTNQAPGDNSDVYLRPCAVYPDPFRGSPNIIVLAECWNADGTPNKYNFRHDCVKVMDT--YADDEPLFGLEQEYTLL 137

HSP 2 Score: 22.3274 bits (46), Expect = 2.146e-24
Identity = 6/10 (60.00%), Postives = 7/10 (70.00%), Query Frame = 2 
Query:  698 PLGWPVGAYP 727
            P GWP G +P
Sbjct:  143 PYGWPAGGFP 152
[Close]
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA_XENLA (Glutamine synthetase OS=Xenopus laevis GN=glul PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 4.148e-22
Identity = 51/122 (41.80%), Postives = 74/122 (60.66%), Query Frame = 3 
Query:  315 PYTDKIIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLL 680
            P  +K+   Y+WI GTG  +R K++T+ +  +   E+P+WN+DGSST QA G +S++ L P  +F+DPF    N LV+C+      +   TN RH   +I     V+   PWFG+EQEYTLL
Sbjct:   21 PQGEKVQVTYVWIDGTGEGVRCKTRTLDQEPKTIDEIPEWNFDGSSTHQAEGSNSDMYLIPVQMFRDPFCLDPNKLVMCEVLKYNRKSAETNLRHTCKKIM--EMVNDHRPWFGMEQEYTLL 140

HSP 2 Score: 21.557 bits (44), Expect = 4.148e-22
Identity = 6/11 (54.55%), Postives = 7/11 (63.64%), Query Frame = 2 
Query:  698 PLGWPVGAYPG 730
            P GWP   +PG
Sbjct:  146 PYGWPENGFPG 156
The following BLAST results are available for this feature:
BLAST of FC921303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
GLNA_MOUSE1.538e-2545.08Glutamine synthetase OS=Mus musculus GN=Glul PE=1 ... [more]
GLNA_FUSSH1.539e-2544.92Glutamine synthetase OS=Fusarium solani subsp. pha... [more]
GLNA_RAT2.001e-2545.08Glutamine synthetase OS=Rattus norvegicus GN=Glul ... [more]
GLNA_CHICK2.605e-2545.90Glutamine synthetase OS=Gallus gallus GN=GLUL PE=2... [more]
GLNA_MACFA3.390e-2546.34Glutamine synthetase OS=Macaca fascicularis GN=GLU... [more]
GLNA_MIMIV3.781e-2548.36Putative glutamine synthetase OS=Acanthamoeba poly... [more]
GLNA_ACOCA5.743e-2545.08Glutamine synthetase OS=Acomys cahirinus GN=GLUL P... [more]
GLNA_CRIGR2.144e-2445.08Glutamine synthetase OS=Cricetulus griseus GN=GLUL... [more]
GLNA_GIBFU2.146e-2442.34Glutamine synthetase OS=Gibberella fujikuroi GN=GL... [more]
GLNA_XENLA4.148e-2241.80Glutamine synthetase OS=Xenopus laevis GN=glul PE=... [more]

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Properties
Property NameValue
Genbank descriptionC32103D09EF RVDevelopN Citrus clementina cDNA clone C32103D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921303 ID=FC921303; Name=FC921303; organism=Citrus clementina; type=EST; length=731bp
GGGAGTCTTCTCTTCTTTCTTTCTAATCGGACCCTGCAGCAGATCAGCAT
TTTGGTTTTACTCTTCAACCAATTTTCAGGGAGGAGTAGGTGAAAATGGC
GCAGATTTTGGCACCTTCTATGCAATGGCAGATGAGGATGCCTAAGTACT
CAAACATTGCAAGTCCTATGACAACAAAGATGTGGAGTTCTCTGTTGATG
AAGCAGAACAAGAAAGGAACAAATAGGAGTTCTGCCAAGTTTAGAGTGCT
TGCTTTGAAATCTGAAGACAGCACTGTCAATAGGCTAGAGGATCTACTCA
ATTTGGACATCACTCCATATACTGACAAAATCATTGCCGAATATATTTGG
ATTGGAGGTACTGGGATTGATATGCGTAGCAAGTCAAAGACCATTTCAAA
GCCTGTTGAGCATCCATCTGAGCTTCCCAAGTGGAATTATGATGGATCAA
GTACTGGACAGGCACCTGGTGAAGATAGTGAAGTAATTTTATACCCTCAA
GCAATTTTTAAGGACCCCTTCCGTGGAGGAAACAACATCTTGGTAATTTG
TGATACCTACACACCAGCAGGCGAGCCCATCCCTACAAACAAACGCCATA
GGGCTGCTGAAATTTTCAGTAACTCGAAAGTGTCTGCTGAAGTTCCATGG
TTTGGGATAGAGCAAGAGTACACCTTACTTCAACAAATGTGAAATGGCCT
CTGGGTTGGCCTGTTGGAGCCTATCCTGGTC
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