FC921303

Overview
NameFC921303
Unique NameFC921303
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA2_CHLRE (Glutamine synthetase, chloroplastic OS=Chlamydomonas reinhardtii GN=GLN2 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.111e-22
Identity = 57/125 (45.60%), Postives = 77/125 (61.60%), Query Frame = 3
Query:  336 AEYIWIGGT------GI---DMRSKSKTISKPVE-HPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLL 680
            AEYIW  G       G+   +MRSK+K    P+    SE P W++DGSSTGQA G +S+ IL P  +  DP RG  ++LV+C+ + P G+P  TN R +  EI  + KV+AE  W+G EQEYT+L
Sbjct:   37 AEYIWADGNEGKPEKGMIFNEMRSKTKCFEAPLGLDASEYPDWSFDGSSTGQAEGNNSDCILRPVRVVTDPIRGAPHVLVMCEVFAPDGKPHSTNTRAKLREII-DDKVTAEDCWYGFEQEYTML 160          
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA2_STRVR (Glutamine synthetase 2 OS=Streptomyces viridochromogenes GN=glnII PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 3.165e-18
Identity = 52/118 (44.07%), Postives = 67/118 (56.78%), Query Frame = 3
Query:  336 AEYIWIGGTG--IDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQ 683
            AEYIWI GT     +RSK+K I+        LP W +DGSST QA G  S+ +L P     DP RGG++ILV+C+       P  +N R   AE+    + +A+ P FGIEQEYT  Q
Sbjct:    5 AEYIWIDGTEPTAKLRSKTKIITGQPAGLDALPIWGFDGSSTNQAEGHSSDCVLKPVFTCPDPIRGGDDILVLCEVLNIDLTPHASNTRAALAEV--AERFAAQEPIFGIEQEYTFFQ 120          

HSP 2 Score: 20.4014 bits (41), Expect = 3.165e-18
Identity = 6/11 (54.55%), Postives = 9/11 (81.82%), Query Frame = 2
Query:  695 WPLGWPVGAYP 727
            +PLG+P G +P
Sbjct:  123 YPLGFPKGGFP 133          
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA2_STRHY (Glutamine synthetase 2 OS=Streptomyces hygroscopicus GN=glnB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.701e-17
Identity = 50/118 (42.37%), Postives = 69/118 (58.47%), Query Frame = 3
Query:  330 IIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQ 683
            I AEYIWI GT    + +SKT  K +   S LP+W +DGSST QA G  S+++L P     DP RGG+++LV+C+       P P+N R     +    + + + P FGIEQEYT L+
Sbjct:    3 IKAEYIWIDGTQPTAKLRSKT--KILSDGSRLPRWGFDGSSTNQAEGHASDLVLEPVFSCPDPIRGGDHLLVLCEVLHTDLTPHPSNTRALLRPV--AERFAGQEPIFGIEQEYTFLK 116          
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA2_FRAAL (Glutamine synthetase 2 OS=Frankia alni GN=glnII PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.219e-15
Identity = 50/116 (43.10%), Postives = 66/116 (56.90%), Query Frame = 3
Query:  336 AEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQ 683
            AEYIWI GT  +   +SKT  + ++   E   W +DGSST QAPG +S+ +L P     DP RGG+N LV+C+       P PTN   RAA +    + +   P FGIEQEYT  +
Sbjct:    5 AEYIWIDGTEPEPLMRSKT--RIIKDGKEPEIWGFDGSSTNQAPGSNSDCVLRPVFETPDPIRGGDNRLVLCEVQLTDFTP-PTNT--RAAALGVAERYADMSPMFGIEQEYTFFK 115          
BLAST of FC921303 vs. ExPASy Swiss-Prot
Match: GLNA2_BRAJA (Glutamine synthetase 2 OS=Bradyrhizobium japonicum GN=glnII PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.822e-11
Identity = 46/115 (40.00%), Postives = 62/115 (53.91%), Query Frame = 3
Query:  339 EYIWIGGTGIDMRSKSKT-ISKPVEHPS--ELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGE-PIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEY 671
            EYIW+ G       + KT I +    P+  +LP W +DGSST QA G  S+ +L P A+F D  R  N +LV+C+   P G+ P  +NKR   A I  ++       WFG EQEY
Sbjct:    7 EYIWLDGYTPTPNLRGKTQIKEFASFPTLEQLPLWGFDGSSTQQAEGHSSDCVLKPVAVFPDAAR-TNGVLVMCEVMMPDGKTPHASNKR---ATILDDAGA-----WFGFEQEY 112          
The following BLAST results are available for this feature:
BLAST of FC921303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
GLNA2_CHLRE5.111e-2245.60Glutamine synthetase, chloroplastic OS=Chlamydomon... [more]
GLNA2_STRVR3.165e-1844.07Glutamine synthetase 2 OS=Streptomyces viridochrom... [more]
GLNA2_STRHY1.701e-1742.37Glutamine synthetase 2 OS=Streptomyces hygroscopic... [more]
GLNA2_FRAAL1.219e-1543.10Glutamine synthetase 2 OS=Frankia alni GN=glnII PE... [more]
GLNA2_BRAJA1.822e-1140.00Glutamine synthetase 2 OS=Bradyrhizobium japonicum... [more]

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Properties
Property NameValue
Genbank descriptionC32103D09EF RVDevelopN Citrus clementina cDNA clone C32103D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921303 ID=FC921303; Name=FC921303; organism=Citrus clementina; type=EST; length=731bp
GGGAGTCTTCTCTTCTTTCTTTCTAATCGGACCCTGCAGCAGATCAGCAT
TTTGGTTTTACTCTTCAACCAATTTTCAGGGAGGAGTAGGTGAAAATGGC
GCAGATTTTGGCACCTTCTATGCAATGGCAGATGAGGATGCCTAAGTACT
CAAACATTGCAAGTCCTATGACAACAAAGATGTGGAGTTCTCTGTTGATG
AAGCAGAACAAGAAAGGAACAAATAGGAGTTCTGCCAAGTTTAGAGTGCT
TGCTTTGAAATCTGAAGACAGCACTGTCAATAGGCTAGAGGATCTACTCA
ATTTGGACATCACTCCATATACTGACAAAATCATTGCCGAATATATTTGG
ATTGGAGGTACTGGGATTGATATGCGTAGCAAGTCAAAGACCATTTCAAA
GCCTGTTGAGCATCCATCTGAGCTTCCCAAGTGGAATTATGATGGATCAA
GTACTGGACAGGCACCTGGTGAAGATAGTGAAGTAATTTTATACCCTCAA
GCAATTTTTAAGGACCCCTTCCGTGGAGGAAACAACATCTTGGTAATTTG
TGATACCTACACACCAGCAGGCGAGCCCATCCCTACAAACAAACGCCATA
GGGCTGCTGAAATTTTCAGTAACTCGAAAGTGTCTGCTGAAGTTCCATGG
TTTGGGATAGAGCAAGAGTACACCTTACTTCAACAAATGTGAAATGGCCT
CTGGGTTGGCCTGTTGGAGCCTATCCTGGTC
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