FC921306

Overview
NameFC921306
Unique NameFC921306
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921306 vs. ExPASy Swiss-Prot
Match: ADH1_KLULA (Alcohol dehydrogenase 1 OS=Kluyveromyces lactis GN=ADH1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 52/194 (26.80%), Postives = 81/194 (41.75%), Query Frame = 1
Query:   91 KAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPL---FPRIFGHEAGGIVESVGEGVTDLQPGDHV-LPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAI 660
            K  + +E G  L  +++ V  P+ NE+ + + ++ +CHTD++ W  KG  PL    P + GHE  G+V ++GE V   + GD   +    G C  C +C     + C       D     +DG                  +F +Y        AKI     L +V  + C   T + A +  A  K G  VAI
Sbjct:   10 KGVIFYENGGELQYKDIPVPKPKANELLINVKYSGVCHTDLHAW--KGDWPLPTKLPLVGGHEGAGVVVAMGENVKGWKIGDFAGIKWLNGSCMSCEYCELSNESNCP----EADLSGYTHDG------------------SFQQYATADAVQAAKIPVGTDLAEVAPVLCAGVTVYKA-LKSANLKAGDWVAI 178          
BLAST of FC921306 vs. ExPASy Swiss-Prot
Match: YJJN_ECOLI (Uncharacterized zinc-type alcohol dehydrogenase-like protein yjjN OS=Escherichia coli (strain K12) GN=yjjN PE=3 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 31/99 (31.31%), Postives = 52/99 (52.53%), Query Frame = 1
Query:  118 KPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRI 414
            K LV ++ E+  P  NE  +KI    +C TD++ W        +PR+ GHE  G +  +G+ + DL+ G  V  +    C++CP C S  +N C+ + +
Sbjct:   13 KELVWKQREIPIPGDNEALIKIKSVGICGTDIHAWGGNQPFFSYPRVLGHEICGEIVGLGKNIADLKNGQQVAVIPYVACQQCPACKSGRTNCCEKISV 111          
BLAST of FC921306 vs. ExPASy Swiss-Prot
Match: ADH1_KLUMA (Alcohol dehydrogenase 1 OS=Kluyveromyces marxianus GN=ADH1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 52/194 (26.80%), Postives = 81/194 (41.75%), Query Frame = 1
Query:   91 KAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPL---FPRIFGHEAGGIVESVGEGVTDLQPGDHV-LPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAI 660
            K  + +E G  L  +++ V  P+ NE+ + + ++ +CHTD++ W+  G  PL    P + GHE  GIV ++GE VT  + GD+  +    G C  C  C       C       D     +DG                  +F +Y        A+I     L +V  + C   T + A +  A  K G  VAI
Sbjct:    8 KGVIFYEHGGELQYKDIPVPKPKPNELLINVKYSGVCHTDLHAWQ--GDWPLDTKLPLVGGHEGAGIVVAMGENVTGWEIGDYAGIKWLNGSCMSCEECELSNEPNCP----KADLSGYTHDG------------------SFQQYATADAVQAARIPKNVDLAEVAPILCAGVTVYKA-LKSAHIKAGDWVAI 176          
BLAST of FC921306 vs. ExPASy Swiss-Prot
Match: ADH2_KLUMA (Alcohol dehydrogenase 2 OS=Kluyveromyces marxianus GN=ADH2 PE=3 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 54/195 (27.69%), Postives = 83/195 (42.56%), Query Frame = 1
Query:   91 KAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPL---FPRIFGHEAGGIVESVGEGVTDLQPGDHV-LPVFTGECKECPHCH-SEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAI 660
            K  + +E G  L  +++ V  P+ NE+ + + ++ +CHTD++ W  KG  PL    P + GHE  G+V ++G+ V   + GD   +    G C  C  C  S ESN  D      D     +DG                  +F +Y        A I     L +V  + C   T + A +  A+ K G  VAI
Sbjct:    8 KGVIFYENGGQLYYKDIPVPKPKSNELLINVKYSGVCHTDLHAW--KGDWPLDTKLPLVGGHEGAGVVVAMGDNVKGWKIGDLAGIKWLNGSCMNCEECELSNESNCPD-----ADLSGYTHDG------------------SFQQYATADAVQAAHIPAGTDLAQVAPILCAGVTVYKA-LKTAEMKAGDWVAI 176          
BLAST of FC921306 vs. ExPASy Swiss-Prot
Match: ADH2_CANAL (Alcohol dehydrogenase 2 OS=Candida albicans GN=ADH2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 52/194 (26.80%), Postives = 82/194 (42.27%), Query Frame = 1
Query:   91 KAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPL---FPRIFGHEAGGIVESVGEGVTDLQPGDHV-LPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAI 660
            KA +    G  L  +++ V  P+ NE+ + + ++ +CHTD++ W  KG  PL    P + GHE  G+V ++GE V   + GD+  +    G C  C +C S     C       D     +DG                  +F +Y        A+I     L  V  + C   T + A +  A+ + GQ VAI
Sbjct:    8 KAVIFETNGGKLEYKDIPVPKPKANELLINVKYSGVCHTDLHAW--KGDWPLATKLPLVGGHEGAGVVVALGENVKGWKVGDYAGVKWLNGSCLNCEYCQSGAEPNC----AEADLSGYTHDG------------------SFQQYATADAVQAARIPAGTDLANVAPILCAGVTVYKA-LKTAELEAGQWVAI 176          
BLAST of FC921306 vs. ExPASy Swiss-Prot
Match: ADH2_CAEEL (Alcohol dehydrogenase 2 OS=Caenorhabditis elegans GN=sodh-2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 32/98 (32.65%), Postives = 52/98 (53.06%), Query Frame = 1
Query:  115 GKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQ-TPLFPRIFGHEAGGIVESVGEGVTDLQPGDHV-LPVFTGECKECPHCHSEESNMCD 402
            G PL + +V V  PQ+NE+ +KI ++ +CH+D++ WE   +   + P I GHE  G V ++G  V     GD   + +    C  C +C +    +CD
Sbjct:   19 GGPLEVRQVSVPQPQENELLVKIEYSGICHSDLHTWEGDFEYASICPLIGGHEGAGTVVTIGSKVKGWNIGDRAGIKLINANCLNCEYCKTGHEPLCD 116          
BLAST of FC921306 vs. ExPASy Swiss-Prot
Match: CAD8B_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8B OS=Oryza sativa subsp. japonica GN=CAD8B PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 51/194 (26.29%), Postives = 78/194 (40.21%), Query Frame = 1
Query:   91 KAAVAWEAGKP---LVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHV-LPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAI 660
            KAAV W A      L          + ++V +K+L+  +CHTD++  +      ++P + GHE  G+V  VG GVT  + GD V +  F G C+ C  C     N C  + I ++               GK          FS+  V +   V ++    PLD    L C   T +   V       G+ V +
Sbjct:   81 KAAVGWAARDDSGVLSPYNFSRRAQKDDDVTIKVLYCGICHTDLHVVKNDWGNAMYPVVPGHEIVGVVTGVGAGVTKFKAGDTVGVGFFVGSCRTCDSCGKGYENYCPTMVITSN---------------GKDYGGAATQGGFSDAIVVNEHYVLRVPAGLPLDGAAPLLCAGVTVYSPMVIHGLNAPGKHVGV 259          
The following BLAST results are available for this feature:
BLAST of FC921306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 137
Match NameE-valueIdentityDescription
ADH1_KLULA2.951e-1126.80Alcohol dehydrogenase 1 OS=Kluyveromyces lactis GN... [more]
YJJN_ECOLI3.855e-1131.31Uncharacterized zinc-type alcohol dehydrogenase-li... [more]
ADH1_KLUMA3.855e-1126.80Alcohol dehydrogenase 1 OS=Kluyveromyces marxianus... [more]
ADH2_KLUMA5.034e-1127.69Alcohol dehydrogenase 2 OS=Kluyveromyces marxianus... [more]
ADH2_CANAL6.575e-1126.80Alcohol dehydrogenase 2 OS=Candida albicans GN=ADH... [more]
ADH2_CAEEL6.575e-1132.65Alcohol dehydrogenase 2 OS=Caenorhabditis elegans ... [more]
CAD8B_ORYSJ8.587e-1126.29Probable cinnamyl alcohol dehydrogenase 8B OS=Oryz... [more]

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Properties
Property NameValue
Genbank descriptionC32103D12EF RVDevelopN Citrus clementina cDNA clone C32103D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921306 ID=FC921306; Name=FC921306; organism=Citrus clementina; type=EST; length=705bp
GCAGGCTAAACACTGCTAATTTTACAGGTGTTGAGAGTATCATCATTCAT
CATCAATATGTCTGGCACAGCTGGTCAAGTTATTCGCTGCAAAGCGGCGG
TGGCATGGGAGGCGGGGAAGCCACTGGTGATTGAAGAAGTGGAGGTGGCT
CCACCACAGAAAAATGAAGTTCGATTGAAGATCCTCTTCACCTCTTTATG
CCATACTGATGTTTACTTCTGGGAAGCCAAGGGACAAACACCTCTCTTTC
CTCGCATTTTTGGTCACGAAGCTGGAGGGATTGTAGAAAGTGTAGGGGAG
GGGGTAACTGATCTCCAACCAGGAGACCATGTTCTTCCTGTGTTCACAGG
AGAGTGCAAGGAATGTCCTCACTGTCATTCAGAGGAAAGCAATATGTGTG
ACCTCCTCAGGATCAATACTGACAGGGGTGTTATGATTAATGATGGTCAG
TCGAGATTCTCGATTAAGGGGAAGCCAATTTACCATTTTGTGGGCACTTC
TACCTTCAGTGAATACACTGTTACCCATGTCGGTTGTGTTGCTAAGATCA
ATCCTGCTGCCCCTCTTGACAAAGTTTGTGTGCTTAGCTGTGGAATCTCC
ACAGGTTTTGGGGCTACTGTTAATGTCGCCAAACCGAAGAAAGGCCAGTC
TGTTGCCATTTTTGGATTGGGTGCAGTTGGCCTCGCTGCTGCCGAAGGGG
CAAGG
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