FC921312 | Citrus Genome Database

Overview


Name	FC921312
Unique Name	FC921312
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	675

Libraries


Library Name	Type
RVDevelopN	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_BACWK (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus weihenstephanensis (strain KBAB4) GN=ispF PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.865e-29
Identity = 55/101 (54.46%), Postives = 71/101 (70.30%), Query Frame = 2

Query:  293 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            FR+G GFD+H    G PLIIGGI +PHE+G   HSD DVLLH + DA LGA+   DIG+ FPD+DP +K A S+V +++    + E GYE+GNLD T+I Q
Sbjct:    2 FRIGQGFDVHEFAEGRPLIIGGITIPHEKGLIGHSDADVLLHTIADACLGAIAAGDIGKHFPDTDPAFKDADSAVLLQKVWEFVREQGYELGNLDCTIIAQ 102

HSP 2 Score: 27.7202 bits (60), Expect = 4.865e-29
Identity = 11/27 (40.74%), Postives = 19/27 (70.37%), Query Frame = 1

Query:  571 LGCHADSSRPKLSPYKETIRTNLSELL 651
            L C   + +PK++P+ E++R  +SELL
Sbjct:   95 LDCTIIAQKPKMAPHIESMRKRISELL 121

BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_BACHK (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus thuringiensis subsp. konkukian GN=ispF PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.865e-29
Identity = 55/101 (54.46%), Postives = 71/101 (70.30%), Query Frame = 2

Query:  293 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            FR+G GFD+H    G PLIIGGI +PHE+G   HSD DVLLH + DA LGA+   DIG+ FPD+DP +K A S+V +++    + E GYE+GNLD T+I Q
Sbjct:    2 FRIGQGFDVHEFAEGRPLIIGGITIPHEKGLIGHSDADVLLHTIADACLGAIAAGDIGKHFPDTDPAFKDADSAVLLQKVWEFVREQGYELGNLDCTIIAQ 102

HSP 2 Score: 27.7202 bits (60), Expect = 4.865e-29
Identity = 11/27 (40.74%), Postives = 19/27 (70.37%), Query Frame = 1

Query:  571 LGCHADSSRPKLSPYKETIRTNLSELL 651
            L C   + +PK++P+ E++R  +SELL
Sbjct:   95 LDCTIIAQKPKMAPHIESMRKRISELL 121

BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_BACCZ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus cereus (strain ZK / E33L) GN=ispF PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.865e-29
Identity = 55/101 (54.46%), Postives = 71/101 (70.30%), Query Frame = 2

Query:  293 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            FR+G GFD+H    G PLIIGGI +PHE+G   HSD DVLLH + DA LGA+   DIG+ FPD+DP +K A S+V +++    + E GYE+GNLD T+I Q
Sbjct:    2 FRIGQGFDVHEFAEGRPLIIGGITIPHEKGLIGHSDADVLLHTIADACLGAIAAGDIGKHFPDTDPAFKDADSAVLLQKVWEFVREQGYELGNLDCTIIAQ 102

HSP 2 Score: 27.7202 bits (60), Expect = 4.865e-29
Identity = 11/27 (40.74%), Postives = 19/27 (70.37%), Query Frame = 1

Query:  571 LGCHADSSRPKLSPYKETIRTNLSELL 651
            L C   + +PK++P+ E++R  +SELL
Sbjct:   95 LDCTIIAQKPKMAPHIESMRKRISELL 121

BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_BACCR (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=ispF PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.865e-29
Identity = 55/101 (54.46%), Postives = 71/101 (70.30%), Query Frame = 2

Query:  293 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            FR+G GFD+H    G PLIIGGI +PHE+G   HSD DVLLH + DA LGA+   DIG+ FPD+DP +K A S+V +++    + E GYE+GNLD T+I Q
Sbjct:    2 FRIGQGFDVHEFAEGRPLIIGGITIPHEKGLIGHSDADVLLHTIADACLGAIAAGDIGKHFPDTDPAFKDADSAVLLQKVWEFVREQGYELGNLDCTIIAQ 102

HSP 2 Score: 27.7202 bits (60), Expect = 4.865e-29
Identity = 11/27 (40.74%), Postives = 19/27 (70.37%), Query Frame = 1

Query:  571 LGCHADSSRPKLSPYKETIRTNLSELL 651
            L C   + +PK++P+ E++R  +SELL
Sbjct:   95 LDCTIIAQKPKMAPHIESMRKRISELL 121

BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_BACCQ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus cereus (strain Q1) GN=ispF PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.865e-29
Identity = 55/101 (54.46%), Postives = 71/101 (70.30%), Query Frame = 2

Query:  293 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            FR+G GFD+H    G PLIIGGI +PHE+G   HSD DVLLH + DA LGA+   DIG+ FPD+DP +K A S+V +++    + E GYE+GNLD T+I Q
Sbjct:    2 FRIGQGFDVHEFAEGRPLIIGGITIPHEKGLIGHSDADVLLHTIADACLGAIAAGDIGKHFPDTDPAFKDADSAVLLQKVWEFVREQGYELGNLDCTIIAQ 102

HSP 2 Score: 27.7202 bits (60), Expect = 4.865e-29
Identity = 11/27 (40.74%), Postives = 19/27 (70.37%), Query Frame = 1

Query:  571 LGCHADSSRPKLSPYKETIRTNLSELL 651
            L C   + +PK++P+ E++R  +SELL
Sbjct:   95 LDCTIIAQKPKMAPHIESMRKRISELL 121

BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_BACC7 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus cereus (strain AH187) GN=ispF PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.865e-29
Identity = 55/101 (54.46%), Postives = 71/101 (70.30%), Query Frame = 2

Query:  293 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            FR+G GFD+H    G PLIIGGI +PHE+G   HSD DVLLH + DA LGA+   DIG+ FPD+DP +K A S+V +++    + E GYE+GNLD T+I Q
Sbjct:    2 FRIGQGFDVHEFAEGRPLIIGGITIPHEKGLIGHSDADVLLHTIADACLGAIAAGDIGKHFPDTDPAFKDADSAVLLQKVWEFVREQGYELGNLDCTIIAQ 102

HSP 2 Score: 27.7202 bits (60), Expect = 4.865e-29
Identity = 11/27 (40.74%), Postives = 19/27 (70.37%), Query Frame = 1

Query:  571 LGCHADSSRPKLSPYKETIRTNLSELL 651
            L C   + +PK++P+ E++R  +SELL
Sbjct:   95 LDCTIIAQKPKMAPHIESMRKRISELL 121

BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_BACC3 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus cereus (strain 03BB102) GN=ispF PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.865e-29
Identity = 55/101 (54.46%), Postives = 71/101 (70.30%), Query Frame = 2

Query:  293 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            FR+G GFD+H    G PLIIGGI +PHE+G   HSD DVLLH + DA LGA+   DIG+ FPD+DP +K A S+V +++    + E GYE+GNLD T+I Q
Sbjct:    2 FRIGQGFDVHEFAEGRPLIIGGITIPHEKGLIGHSDADVLLHTIADACLGAIAAGDIGKHFPDTDPAFKDADSAVLLQKVWEFVREQGYELGNLDCTIIAQ 102

HSP 2 Score: 27.7202 bits (60), Expect = 4.865e-29
Identity = 11/27 (40.74%), Postives = 19/27 (70.37%), Query Frame = 1

Query:  571 LGCHADSSRPKLSPYKETIRTNLSELL 651
            L C   + +PK++P+ E++R  +SELL
Sbjct:   95 LDCTIIAQKPKMAPHIESMRKRISELL 121

BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_BACC2 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus cereus (strain G9842) GN=ispF PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.865e-29
Identity = 55/101 (54.46%), Postives = 71/101 (70.30%), Query Frame = 2

Query:  293 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            FR+G GFD+H    G PLIIGGI +PHE+G   HSD DVLLH + DA LGA+   DIG+ FPD+DP +K A S+V +++    + E GYE+GNLD T+I Q
Sbjct:    2 FRIGQGFDVHEFAEGRPLIIGGITIPHEKGLIGHSDADVLLHTIADACLGAIAAGDIGKHFPDTDPAFKDADSAVLLQKVWEFVREQGYELGNLDCTIIAQ 102

HSP 2 Score: 27.7202 bits (60), Expect = 4.865e-29
Identity = 11/27 (40.74%), Postives = 19/27 (70.37%), Query Frame = 1

Query:  571 LGCHADSSRPKLSPYKETIRTNLSELL 651
            L C   + +PK++P+ E++R  +SELL
Sbjct:   95 LDCTIIAQKPKMAPHIESMRKRISELL 121

BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_BACC0 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus cereus (strain AH820) GN=ispF PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.865e-29
Identity = 55/101 (54.46%), Postives = 71/101 (70.30%), Query Frame = 2

Query:  293 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            FR+G GFD+H    G PLIIGGI +PHE+G   HSD DVLLH + DA LGA+   DIG+ FPD+DP +K A S+V +++    + E GYE+GNLD T+I Q
Sbjct:    2 FRIGQGFDVHEFAEGRPLIIGGITIPHEKGLIGHSDADVLLHTIADACLGAIAAGDIGKHFPDTDPAFKDADSAVLLQKVWEFVREQGYELGNLDCTIIAQ 102

HSP 2 Score: 27.7202 bits (60), Expect = 4.865e-29
Identity = 11/27 (40.74%), Postives = 19/27 (70.37%), Query Frame = 1

Query:  571 LGCHADSSRPKLSPYKETIRTNLSELL 651
            L C   + +PK++P+ E++R  +SELL
Sbjct:   95 LDCTIIAQKPKMAPHIESMRKRISELL 121

BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_BACAN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus anthracis GN=ispF PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.865e-29
Identity = 55/101 (54.46%), Postives = 71/101 (70.30%), Query Frame = 2

Query:  293 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            FR+G GFD+H    G PLIIGGI +PHE+G   HSD DVLLH + DA LGA+   DIG+ FPD+DP +K A S+V +++    + E GYE+GNLD T+I Q
Sbjct:    2 FRIGQGFDVHEFAEGRPLIIGGITIPHEKGLIGHSDADVLLHTIADACLGAIAAGDIGKHFPDTDPAFKDADSAVLLQKVWEFVREQGYELGNLDCTIIAQ 102

HSP 2 Score: 27.7202 bits (60), Expect = 4.865e-29
Identity = 11/27 (40.74%), Postives = 19/27 (70.37%), Query Frame = 1

Query:  571 LGCHADSSRPKLSPYKETIRTNLSELL 651
            L C   + +PK++P+ E++R  +SELL
Sbjct:   95 LDCTIIAQKPKMAPHIESMRKRISELL 121

The following BLAST results are available for this feature:

BLAST of FC921312 vs. ExPASy Swiss-Prot

BLAST of FC921312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
ISPF_BACWK	4.865e-29	54.46	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synth...	[more]
ISPF_BACHK	4.865e-29	54.46	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synth...	[more]
ISPF_BACCZ	4.865e-29	54.46	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synth...	[more]
ISPF_BACCR	4.865e-29	54.46	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synth...	[more]
ISPF_BACCQ	4.865e-29	54.46	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synth...	[more]
ISPF_BACC7	4.865e-29	54.46	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synth...	[more]
ISPF_BACC3	4.865e-29	54.46	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synth...	[more]
ISPF_BACC2	4.865e-29	54.46	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synth...	[more]
ISPF_BACC0	4.865e-29	54.46	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synth...	[more]
ISPF_BACAN	4.865e-29	54.46	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synth...	[more]

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Properties


Property Name	Value
Genbank description	C32103E06EF RVDevelopN Citrus clementina cDNA clone C32103E06, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC921312 ID=FC921312; Name=FC921312; organism=Citrus clementina; type=EST; length=675bp
GGGAGCAGACAGCAGAGCACGAACAGCGTCTCTCCTCTCTTCGTAAAATT
AGATGGTGTTGACGATGGCCGCTCAATCATACACCACCATTCCTCTCTAC
AGCAAAATTACGAATAAGCCACTATGTCCTCCTCCGTTGAGTTTGAAGCC
TCGTAGCTTAACCGCCAAACATCTCCGCACAACACAGTCAACGTCGCTGC
CTCGTATTTCAGTTTCAGCTGCAGCCACTTCTTCCATCGAAGTTAAAGAG
TCATCGGCTTCGATCCAACCGTCCAAATCAAAATCACTGCCTTTTCGTGT
GGGCCACGGGTTTGATCTTCATAGATTGGAGCCTGGCTACCCTCTGATCA
TCGGTGGAATCAATGTTCCCCACGAGAGAGGCTGCGAGGCTCACTCTGAC
GGTGATGTTTTGCTTCACTGTGTTGTGGATGCAATTTTGGGAGCATTGGG
TCTTCCTGATATTGGTCAGATATTTCCTGATTCTGATCCTAAGTGGAAGG
GTGCACCATCCTCTGTTTTTATCAAAGAAGCTGTGAGACTCATGGATGAG
GCCGGCTATGAGATTGGCAACTTGGATGCCACGCTGATTCTTCAAGACCA
AAATTGAGCCCATACAAGGAGACTATCCGAACCAACTTGTCTGAACTGCT
AGGAGCAGACCCCNACCGTTGTAAT