FC921312

Overview
NameFC921312
Unique NameFC921312
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_VIBPA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Vibrio parahaemolyticus GN=ispF PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.041e-26
Identity = 52/100 (52.00%), Postives = 71/100 (71.00%), Query Frame = 2
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHGFD+H+     P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA+   DIG+ FPD+D KWKGA S   +K+  R + E GY +GN D T++ Q
Sbjct:    3 RIGHGFDVHKFGGEGPVIIGGVAIPYEQGLIAHSDGDVALHALTDALLGAIAAGDIGRHFPDTDDKWKGANSRELLKDVYRRVKEQGYRLGNADVTIMAQ 102          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_VIBCM (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=ispF PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.041e-26
Identity = 53/100 (53.00%), Postives = 70/100 (70.00%), Query Frame = 2
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHGFD+HR     P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA+   DIG+ FPD+D KWKGA S   +K+  R +   GY +GN D T+I Q
Sbjct:    3 RIGHGFDVHRFGGEGPIIIGGVKIPYEQGLIAHSDGDVALHALSDALLGAIAAGDIGRHFPDTDDKWKGADSRELLKDVYRRVKAQGYVLGNADVTIIAQ 102          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_VIBCH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Vibrio cholerae GN=ispF PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.041e-26
Identity = 53/100 (53.00%), Postives = 70/100 (70.00%), Query Frame = 2
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHGFD+HR     P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA+   DIG+ FPD+D KWKGA S   +K+  R +   GY +GN D T+I Q
Sbjct:    3 RIGHGFDVHRFGGEGPIIIGGVKIPYEQGLIAHSDGDVALHALSDALLGAIAAGDIGRHFPDTDDKWKGADSRELLKDVYRRVKAQGYVLGNADVTIIAQ 102          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_VIBC3 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=ispF PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.041e-26
Identity = 53/100 (53.00%), Postives = 70/100 (70.00%), Query Frame = 2
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHGFD+HR     P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA+   DIG+ FPD+D KWKGA S   +K+  R +   GY +GN D T+I Q
Sbjct:    3 RIGHGFDVHRFGGEGPIIIGGVKIPYEQGLIAHSDGDVALHALSDALLGAIAAGDIGRHFPDTDDKWKGADSRELLKDVYRRVKAQGYVLGNADVTIIAQ 102          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_SHEHH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shewanella halifaxensis (strain HAW-EB4) GN=ispF PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.041e-26
Identity = 53/103 (51.46%), Postives = 74/103 (71.84%), Query Frame = 2
Query:  287 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            +  R+GHGFD+H+     PLI+GG++VP+E G  AHSDGDV LH + DAILGA+ L DIG+ FPD+DP++KGA S V ++   +L  + G+ + NLD T+I Q
Sbjct:    1 MKIRIGHGFDVHKFGGEPPLILGGVDVPYEVGLIAHSDGDVALHAISDAILGAMALGDIGKHFPDTDPEFKGADSRVLLRHCYQLATDMGFSLSNLDVTIIAQ 103          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_SALAR (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=ispF PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.041e-26
Identity = 53/100 (53.00%), Postives = 72/100 (72.00%), Query Frame = 2
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I Q
Sbjct:    2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYILGNVDVTIIAQ 101          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_SYMTH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Symbiobacterium thermophilum GN=ispF PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.037e-26
Identity = 49/99 (49.49%), Postives = 67/99 (67.68%), Query Frame = 2
Query:  299 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            +G G+D+HRL PG PL++GG+ +P +RG E HSD DV LH ++DA+LGA GL DIG  FP +DP W GA S   ++  V L+ E GY   N D T++ +
Sbjct:    3 IGFGYDVHRLVPGRPLVLGGVEIPSKRGLEGHSDADVALHALMDALLGAAGLGDIGTHFPPTDPAWAGANSLDLLRRVVGLLAEEGYRPVNCDITVVAE 101          

HSP 2 Score: 28.1054 bits (61), Expect = 6.037e-26
Identity = 10/27 (37.04%), Postives = 16/27 (59.26%), Query Frame = 1
Query:  589 SSRPKLSPYKETIRTNLSELLGADPXR 669
            + RPK+ PY   +R  +  +LG +P R
Sbjct:  100 AERPKIGPYVPAMRERIGAVLGVEPRR 126          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_YERPY (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=ispF PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.583e-26
Identity = 57/102 (55.88%), Postives = 75/102 (73.53%), Query Frame = 2
Query:  296 RVGHGFDLHRL-EPGY-PLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHGFD+H+  E G  PLIIGG+ +P+E+G  AHSDGDV LH   DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY++GNLD T+I Q
Sbjct:    2 RIGHGFDVHKFGENGSGPLIIGGVRIPYEKGLLAHSDGDVALHAATDALLGAAALGDIGKLFPDTDPAFKGADSRGLLREAYRRILAKGYKLGNLDITIIAQ 103          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_YERPS (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Yersinia pseudotuberculosis GN=ispF PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.583e-26
Identity = 57/102 (55.88%), Postives = 75/102 (73.53%), Query Frame = 2
Query:  296 RVGHGFDLHRL-EPGY-PLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHGFD+H+  E G  PLIIGG+ +P+E+G  AHSDGDV LH   DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY++GNLD T+I Q
Sbjct:    2 RIGHGFDVHKFGENGSGPLIIGGVRIPYEKGLLAHSDGDVALHAATDALLGAAALGDIGKLFPDTDPAFKGADSRGLLREAYRRILAKGYKLGNLDITIIAQ 103          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_YERPP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Yersinia pestis (strain Pestoides F) GN=ispF PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.583e-26
Identity = 57/102 (55.88%), Postives = 75/102 (73.53%), Query Frame = 2
Query:  296 RVGHGFDLHRL-EPGY-PLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHGFD+H+  E G  PLIIGG+ +P+E+G  AHSDGDV LH   DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY++GNLD T+I Q
Sbjct:    2 RIGHGFDVHKFGENGSGPLIIGGVRIPYEKGLLAHSDGDVALHAATDALLGAAALGDIGKLFPDTDPAFKGADSRGLLREAYRRILAKGYKLGNLDITIIAQ 103          
The following BLAST results are available for this feature:
BLAST of FC921312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_VIBPA5.041e-2652.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_VIBCM5.041e-2653.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_VIBCH5.041e-2653.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_VIBC35.041e-2653.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SHEHH5.041e-2651.462-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SALAR5.041e-2653.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SYMTH6.037e-2649.492-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_YERPY6.583e-2655.882-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_YERPS6.583e-2655.882-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_YERPP6.583e-2655.882-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32103E06EF RVDevelopN Citrus clementina cDNA clone C32103E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921312 ID=FC921312; Name=FC921312; organism=Citrus clementina; type=EST; length=675bp
GGGAGCAGACAGCAGAGCACGAACAGCGTCTCTCCTCTCTTCGTAAAATT
AGATGGTGTTGACGATGGCCGCTCAATCATACACCACCATTCCTCTCTAC
AGCAAAATTACGAATAAGCCACTATGTCCTCCTCCGTTGAGTTTGAAGCC
TCGTAGCTTAACCGCCAAACATCTCCGCACAACACAGTCAACGTCGCTGC
CTCGTATTTCAGTTTCAGCTGCAGCCACTTCTTCCATCGAAGTTAAAGAG
TCATCGGCTTCGATCCAACCGTCCAAATCAAAATCACTGCCTTTTCGTGT
GGGCCACGGGTTTGATCTTCATAGATTGGAGCCTGGCTACCCTCTGATCA
TCGGTGGAATCAATGTTCCCCACGAGAGAGGCTGCGAGGCTCACTCTGAC
GGTGATGTTTTGCTTCACTGTGTTGTGGATGCAATTTTGGGAGCATTGGG
TCTTCCTGATATTGGTCAGATATTTCCTGATTCTGATCCTAAGTGGAAGG
GTGCACCATCCTCTGTTTTTATCAAAGAAGCTGTGAGACTCATGGATGAG
GCCGGCTATGAGATTGGCAACTTGGATGCCACGCTGATTCTTCAAGACCA
AAATTGAGCCCATACAAGGAGACTATCCGAACCAACTTGTCTGAACTGCT
AGGAGCAGACCCCNACCGTTGTAAT
back to top