FC921312

Overview
NameFC921312
Unique NameFC921312
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPDF_BARHE (Bifunctional enzyme ispD/ispF OS=Bartonella henselae GN=ispDF PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 3.069e-20
Identity = 43/101 (42.57%), Postives = 63/101 (62.38%), Query Frame = 2
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQD 598
            R G+G+D+H  E G  LI+ GI +P  +    HSD DV LH + DA+L   G  DIG  FP SDP+W+   S +F++ A+ ++ +AG  I N+D TLI ++
Sbjct:  237 RTGNGYDVHSFEEGNSLILCGIKIPFHKKLNGHSDADVALHALTDALLATRGAGDIGTHFPPSDPQWQNVSSEIFLRHALDIVKQAGGRIANVDITLIAEE 337          

HSP 2 Score: 22.3274 bits (46), Expect = 3.069e-20
Identity = 9/27 (33.33%), Postives = 14/27 (51.85%), Query Frame = 1
Query:  589 SSRPKLSPYKETIRTNLSELLGADPXR 669
            +  PK+ PY+  +  NL  +L   P R
Sbjct:  335 AEEPKIGPYRHAMVGNLMNMLTILPDR 361          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_PROVI (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=ispF PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.165e-20
Identity = 44/100 (44.00%), Postives = 67/100 (67.00%), Query Frame = 2
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+G G D+H  + G  LI+GG+++P  +G + HSD DVLLH V DA+LGA  L DIG  FPD+ P++K   S + +K   +L+++ G+   N+DA L+L+
Sbjct:    2 RIGIGIDVHSFKEGRKLIVGGVDIPSPKGLDGHSDADVLLHAVSDALLGAAALGDIGLHFPDTSPEFKDIDSMILLKHVGKLLEKNGWRTVNVDAMLLLE 101          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_CELJU (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cellvibrio japonicus (strain Ueda107) GN=ispF PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.165e-20
Identity = 42/103 (40.78%), Postives = 67/103 (65.05%), Query Frame = 2
Query:  287 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            +  R+G G+D+H    G  ++IGG+ +PH  G  AHSDGDVLLH + DA+LGA+ L DIG+ FPD+D +++ A S   ++     + + G+++ N D T++ Q
Sbjct:    1 MSMRIGQGYDVHAFGEGEKIVIGGVVIPHHHGLVAHSDGDVLLHALCDALLGAVALGDIGKHFPDTDMQYRNADSRSLLRMVYAKVSQHGWKLANADMTIVAQ 103          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_AKKM8 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=ispF PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.165e-20
Identity = 48/99 (48.48%), Postives = 65/99 (65.66%), Query Frame = 2
Query:  302 GHGFDLHRL-EPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            G G+D+HR  E   PL++GG+++P  RG + HSD DVL H + DA+LGA GLPDIG  FP  DP  K  PS   + +AV L+ E G  I N+D++LI +
Sbjct:    9 GIGYDIHRFAEVPRPLMLGGVHIPSSRGLDGHSDADVLCHAIADALLGAAGLPDIGYWFPPGDPSCKDIPSLDIVAKAVSLIRERGGRIVNVDSSLIAE 107          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPDF_BARBK (Bifunctional enzyme ispD/ispF OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=ispDF PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.992e-20
Identity = 43/100 (43.00%), Postives = 62/100 (62.00%), Query Frame = 2
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R G+G+D+H  E G+ + + GI +P E+    HSD DV LH + DA+L   G  DIG  FP SDP+WK A S +F+  A+ ++ +A   I N+D TLI +
Sbjct:  237 RTGNGYDVHSFEDGHYITLCGIKIPFEKKLNGHSDADVALHALTDALLATQGAGDIGTHFPPSDPQWKNASSEIFLHHAIEIIKKAEGRIANVDITLIAE 336          

HSP 2 Score: 22.7126 bits (47), Expect = 3.992e-20
Identity = 7/21 (33.33%), Postives = 14/21 (66.67%), Query Frame = 1
Query:  589 SSRPKLSPYKETIRTNLSELL 651
            + +PK+ PY+  +  NL ++L
Sbjct:  335 AEKPKIGPYRHIMTENLMKIL 355          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPDF_WOLSU (Bifunctional enzyme ispD/ispF OS=Wolinella succinogenes GN=ispDF PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.996e-20
Identity = 42/98 (42.86%), Postives = 64/98 (65.31%), Query Frame = 2
Query:  302 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            G GFD+H    G  L + G+N+P     +AHSDGDV +H ++DA+LGA G  DIG+ FPDSD  +KG  S++ ++E ++ +   G+E+ N D T++ Q
Sbjct:  216 GSGFDVHAFMEGEGLRLAGVNIPAPVTFKAHSDGDVAIHALIDALLGAAGAGDIGEWFPDSDLAYKGVDSTLLLQEVIKFIRGIGFELINADLTIMAQ 313          

HSP 2 Score: 26.1794 bits (56), Expect = 3.996e-20
Identity = 10/18 (55.56%), Postives = 13/18 (72.22%), Query Frame = 1
Query:  598 PKLSPYKETIRTNLSELL 651
            PKLSPYKE +   L E++
Sbjct:  315 PKLSPYKEAMERRLGEVM 332          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPDF_CAMFF (Bifunctional enzyme ispD/ispF OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=ispDF PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.997e-20
Identity = 41/98 (41.84%), Postives = 65/98 (66.33%), Query Frame = 2
Query:  302 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            G+GFD+H  + G  + + G+ +P+ +   AHSDGDV LH + DA+LGA   PDIG+++PD+D K+K   S + ++ +V L+   G++I N D T+I Q
Sbjct:  213 GNGFDVHAFKEGDFITLCGVKIPYSKAFIAHSDGDVALHALCDALLGAASAPDIGELYPDNDSKFKDIDSKILLQNSVNLIRSIGFDIINADITIIAQ 310          

HSP 2 Score: 24.6386 bits (52), Expect = 3.997e-20
Identity = 9/26 (34.62%), Postives = 17/26 (65.38%), Query Frame = 1
Query:  598 PKLSPYKETIRTNLSELLGADPXRCN 675
            PK+SPYK+ +   ++++LG    + N
Sbjct:  312 PKISPYKDAMAKIVADILGIPLHKVN 337          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_CHLP8 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Chlorobaculum parvum (strain NCIB 8327) GN=ispF PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.109e-20
Identity = 44/100 (44.00%), Postives = 63/100 (63.00%), Query Frame = 2
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+G G D+H+      LI+GG+ VP   G   HSD DVLLH + DA+LGA  L DIG+ FPD+ P +K A S   +K   +L+++ GY+  N+D  L+L+
Sbjct:    2 RIGIGIDVHQFSEDRKLIVGGVEVPSPVGLLGHSDADVLLHAISDALLGAAALGDIGKHFPDTSPDYKDADSMELLKHVGKLLEQEGYKPVNIDTMLLLE 101          

HSP 2 Score: 25.0238 bits (53), Expect = 4.109e-20
Identity = 9/22 (40.91%), Postives = 15/22 (68.18%), Query Frame = 1
Query:  595 RPKLSPYKETIRTNLSELLGAD 660
            +PK++PY E +R N++  L  D
Sbjct:  102 KPKIAPYIEQMRRNIASCLDMD 123          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPDF_CAMHC (Bifunctional enzyme ispD/ispF OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=ispDF PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.199e-20
Identity = 41/98 (41.84%), Postives = 62/98 (63.27%), Query Frame = 2
Query:  302 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            G+GFD+H    G  + +GG+ +P E     HSD D  +H ++DAILGA GL DIG++FPD+D  +KG  S + +++ V  +   G++I N D T+I Q
Sbjct:  215 GNGFDVHAFAKGEFITLGGVKIPCEYSLVGHSDADAAIHALMDAILGACGLGDIGELFPDTDDSFKGIDSKILLQKVVNFVHLLGFKIINADITIIAQ 312          

HSP 2 Score: 26.5646 bits (57), Expect = 5.199e-20
Identity = 11/21 (52.38%), Postives = 16/21 (76.19%), Query Frame = 1
Query:  589 SSRPKLSPYKETIRTNLSELL 651
            + +PK+SPYKE +   LSE+L
Sbjct:  311 AQKPKISPYKEKMCEILSEIL 331          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_WIGBR (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Wigglesworthia glossinidia brevipalpis GN=ispF PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.398e-20
Identity = 45/101 (44.55%), Postives = 72/101 (71.29%), Query Frame = 2
Query:  296 RVGHGFDLHRLEPGY-PLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            RVGHGFD+H+    Y PLI+GG+++P+ +G  +HSDGDV++H ++D++LGA  L DIG +FP++D K+K   S + ++     + +  Y+IGN+D TL L+
Sbjct:    2 RVGHGFDIHKFGKIYKPLILGGVHIPYCKGVVSHSDGDVIIHSIIDSLLGASSLGDIGILFPNNDIKYKNINSCILLQVVWNCIKKK-YKIGNIDVTLFLE 101          
The following BLAST results are available for this feature:
BLAST of FC921312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPDF_BARHE3.069e-2042.57Bifunctional enzyme ispD/ispF OS=Bartonella hensel... [more]
ISPF_PROVI3.165e-2044.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_CELJU3.165e-2040.782-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_AKKM83.165e-2048.482-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_BARBK3.992e-2043.00Bifunctional enzyme ispD/ispF OS=Bartonella bacill... [more]
ISPDF_WOLSU3.996e-2042.86Bifunctional enzyme ispD/ispF OS=Wolinella succino... [more]
ISPDF_CAMFF3.997e-2041.84Bifunctional enzyme ispD/ispF OS=Campylobacter fet... [more]
ISPF_CHLP84.109e-2044.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_CAMHC5.199e-2041.84Bifunctional enzyme ispD/ispF OS=Campylobacter hom... [more]
ISPF_WIGBR5.398e-2044.552-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionC32103E06EF RVDevelopN Citrus clementina cDNA clone C32103E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921312 ID=FC921312; Name=FC921312; organism=Citrus clementina; type=EST; length=675bp
GGGAGCAGACAGCAGAGCACGAACAGCGTCTCTCCTCTCTTCGTAAAATT
AGATGGTGTTGACGATGGCCGCTCAATCATACACCACCATTCCTCTCTAC
AGCAAAATTACGAATAAGCCACTATGTCCTCCTCCGTTGAGTTTGAAGCC
TCGTAGCTTAACCGCCAAACATCTCCGCACAACACAGTCAACGTCGCTGC
CTCGTATTTCAGTTTCAGCTGCAGCCACTTCTTCCATCGAAGTTAAAGAG
TCATCGGCTTCGATCCAACCGTCCAAATCAAAATCACTGCCTTTTCGTGT
GGGCCACGGGTTTGATCTTCATAGATTGGAGCCTGGCTACCCTCTGATCA
TCGGTGGAATCAATGTTCCCCACGAGAGAGGCTGCGAGGCTCACTCTGAC
GGTGATGTTTTGCTTCACTGTGTTGTGGATGCAATTTTGGGAGCATTGGG
TCTTCCTGATATTGGTCAGATATTTCCTGATTCTGATCCTAAGTGGAAGG
GTGCACCATCCTCTGTTTTTATCAAAGAAGCTGTGAGACTCATGGATGAG
GCCGGCTATGAGATTGGCAACTTGGATGCCACGCTGATTCTTCAAGACCA
AAATTGAGCCCATACAAGGAGACTATCCGAACCAACTTGTCTGAACTGCT
AGGAGCAGACCCCNACCGTTGTAAT
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