FC921312

Overview
NameFC921312
Unique NameFC921312
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_CORGL (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Corynebacterium glutamicum GN=ispF PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.585e-14
Identity = 41/100 (41.00%), Postives = 55/100 (55.00%), Query Frame = 2
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            RVG   D H++E G P  I  +      GCE HSDGDV+ H +VDA+L A GL D+G       P++ G   +  +KE   L+   GY IGN+ A L+ Q
Sbjct:    8 RVGIATDAHQIEAGKPCWIACLLFEGVDGCEGHSDGDVVAHAIVDALLSASGLGDLGSFVGVGRPEYDGVSGTQLLKEVRELLSAHGYVIGNVAAQLVGQ 107          

HSP 2 Score: 21.557 bits (44), Expect = 1.585e-14
Identity = 8/20 (40.00%), Postives = 13/20 (65.00%), Query Frame = 1
Query:  598 PKLSPYKETIRTNLSELLGA 657
            PK  P +E  +  +SE++GA
Sbjct:  109 PKFGPRREEAQQVISEIIGA 128          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_KINRD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=ispF PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.595e-14
Identity = 42/99 (42.42%), Postives = 58/99 (58.59%), Query Frame = 2
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHER-GCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLI 589
            RVG G D+H+L  G P  + G+    E  G E HSDGDV  H   DA+  A GL D+G  F  + P++ GA  +  + EA RL+ EAG+EIGN+   ++
Sbjct:    6 RVGTGVDVHQLVAGRPCWVAGLLWEGEAAGPEGHSDGDVAAHACCDALFAAAGLGDLGAHFGTARPEFAGASGARLLAEAARLVREAGFEIGNVSVQVV 104          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_CORGB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Corynebacterium glutamicum (strain R) GN=ispF PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.595e-14
Identity = 40/100 (40.00%), Postives = 56/100 (56.00%), Query Frame = 2
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            RVG   D H++E G P  I  +      GCE HSDGDV+ H +VDA+L A GL D+G       P++ G   +  +KE   L++  G+ IGN+ A L+ Q
Sbjct:    8 RVGIATDAHQIEAGKPCWIACLLFEGVDGCEGHSDGDVIAHAIVDALLSASGLGDLGSFVGVGRPEYDGVSGTQLLKEVRELLESRGFVIGNVAAQLVGQ 107          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_PLAFX (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Plasmodium falciparum (isolate HB3) GN=ISPF PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.426e-14
Identity = 44/119 (36.97%), Postives = 68/119 (57.14%), Query Frame = 2
Query:  296 RVGHGFDLHR---LEPGY----------------PLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+G G+D+H+   L+  Y                 L +GG+ + +     +HSDGD++ H +VD+ILGALG  DIG +FPD D K K   S++F++ A  L+ +  Y+IGN+D  +I Q
Sbjct:   65 RIGQGYDIHKIKVLDEEYNTYANNDFNKNEQSFKTLTLGGVKINNVLVL-SHSDGDIIYHSIVDSILGALGSLDIGTLFPDKDEKNKNKNSAIFLRYARLLIYKKNYDIGNVDINVIAQ 182          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_PLAF7 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Plasmodium falciparum (isolate 3D7) GN=ISPF PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.426e-14
Identity = 44/119 (36.97%), Postives = 68/119 (57.14%), Query Frame = 2
Query:  296 RVGHGFDLHR---LEPGY----------------PLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+G G+D+H+   L+  Y                 L +GG+ + +     +HSDGD++ H +VD+ILGALG  DIG +FPD D K K   S++F++ A  L+ +  Y+IGN+D  +I Q
Sbjct:   65 RIGQGYDIHKIKVLDEEYNTYANNDFNKNEQSFKTLTLGGVKINNVLVL-SHSDGDIIYHSIVDSILGALGSLDIGTLFPDKDEKNKNKNSAIFLRYARLLIYKKNYDIGNVDINVIAQ 182          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_FRASN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Frankia sp. (strain EAN1pec) GN=ispF PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.426e-14
Identity = 38/98 (38.78%), Postives = 53/98 (54.08%), Query Frame = 2
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLI 589
            RVG G D+H  E G    +  +  P E G   HSDGDV  H   DA+L A G+ D+G +F    P+W GA  +  + E  RL+ E G+ IGN+   ++
Sbjct:    8 RVGTGVDVHPFEQGRECWVACLLWPGETGLAGHSDGDVASHAACDALLTASGIGDLGAVFGTGRPEWSGASGAALLGETARLLAEGGWLIGNVAVQVV 105          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_CORU7 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=ispF PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.426e-14
Identity = 40/98 (40.82%), Postives = 55/98 (56.12%), Query Frame = 2
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLI 589
            RVG   D H++EPG P  + G+      GCE HSDGDV+ H +VDA+L A GL D+G        ++ G      I E  +L+ E G+ IGN+ A +I
Sbjct:    8 RVGIASDAHQVEPGKPCWMAGLLFEDADGCEGHSDGDVVSHVIVDALLSASGLGDLGSFVGVGRKEYDGVSGERLITECRQLLAENGFTIGNVAAQMI 105          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_FRASC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Frankia sp. (strain CcI3) GN=ispF PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 5.781e-14
Identity = 39/98 (39.80%), Postives = 54/98 (55.10%), Query Frame = 2
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLI 589
            RVG G D+H    G P  +  +  P E G   HSDGDV  H   DA+L A  L D+G++F    P++ GA  +V + E  RL+  AG+ IGN+   +I
Sbjct:    8 RVGVGVDVHPFAAGRPCWVACLEWPGETGLAGHSDGDVAAHAACDALLTASCLGDLGRVFGTDRPEYAGASGAVLLAETARLLGAAGWAIGNVSVQVI 105          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_SALTO (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=ispF PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.197e-13
Identity = 37/98 (37.76%), Postives = 51/98 (52.04%), Query Frame = 2
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLI 589
            RV  G D+H  E G P  + G++ P + G   HSD DV  H   +A+L A  L D+G  F    P+W GA     + E+ R +  AGY IGN+   +I
Sbjct:    6 RVAIGVDMHAFESGRPCWVAGLHWPGQDGLAGHSDADVAAHAACNALLSAAELGDLGANFGVGQPEWSGASGVALLSESARRVRTAGYTIGNVSVQVI 103          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_FRAAA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Frankia alni (strain ACN14a) GN=ispF PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.747e-13
Identity = 38/98 (38.78%), Postives = 53/98 (54.08%), Query Frame = 2
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLI 589
            RVG G D+H    G P  +  +  P E G   HSDGDV  H   DA+L A  L D+G++F    P++ GA  +V + E  RL+   G+ IGN+   +I
Sbjct:    8 RVGIGVDVHPFAAGRPCWVACLEWPGETGLAGHSDGDVAAHATCDALLTASCLGDLGKVFGTDRPEYAGASGAVLLAETARLLAVGGWVIGNVSVQVI 105          
The following BLAST results are available for this feature:
BLAST of FC921312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_CORGL1.585e-1441.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_KINRD2.595e-1442.422-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_CORGB2.595e-1440.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PLAFX4.426e-1436.972-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PLAF74.426e-1436.972-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_FRASN4.426e-1438.782-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_CORU74.426e-1440.822-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_FRASC5.781e-1439.802-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SALTO2.197e-1337.762-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_FRAAA3.747e-1338.782-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionC32103E06EF RVDevelopN Citrus clementina cDNA clone C32103E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921312 ID=FC921312; Name=FC921312; organism=Citrus clementina; type=EST; length=675bp
GGGAGCAGACAGCAGAGCACGAACAGCGTCTCTCCTCTCTTCGTAAAATT
AGATGGTGTTGACGATGGCCGCTCAATCATACACCACCATTCCTCTCTAC
AGCAAAATTACGAATAAGCCACTATGTCCTCCTCCGTTGAGTTTGAAGCC
TCGTAGCTTAACCGCCAAACATCTCCGCACAACACAGTCAACGTCGCTGC
CTCGTATTTCAGTTTCAGCTGCAGCCACTTCTTCCATCGAAGTTAAAGAG
TCATCGGCTTCGATCCAACCGTCCAAATCAAAATCACTGCCTTTTCGTGT
GGGCCACGGGTTTGATCTTCATAGATTGGAGCCTGGCTACCCTCTGATCA
TCGGTGGAATCAATGTTCCCCACGAGAGAGGCTGCGAGGCTCACTCTGAC
GGTGATGTTTTGCTTCACTGTGTTGTGGATGCAATTTTGGGAGCATTGGG
TCTTCCTGATATTGGTCAGATATTTCCTGATTCTGATCCTAAGTGGAAGG
GTGCACCATCCTCTGTTTTTATCAAAGAAGCTGTGAGACTCATGGATGAG
GCCGGCTATGAGATTGGCAACTTGGATGCCACGCTGATTCTTCAAGACCA
AAATTGAGCCCATACAAGGAGACTATCCGAACCAACTTGTCTGAACTGCT
AGGAGCAGACCCCNACCGTTGTAAT
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