FC921312
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_CORGL (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Corynebacterium glutamicum GN=ispF PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 1.585e-14 Identity = 41/100 (41.00%), Postives = 55/100 (55.00%), Query Frame = 2 Query: 296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 RVG D H++E G P I + GCE HSDGDV+ H +VDA+L A GL D+G P++ G + +KE L+ GY IGN+ A L+ Q Sbjct: 8 RVGIATDAHQIEAGKPCWIACLLFEGVDGCEGHSDGDVVAHAIVDALLSASGLGDLGSFVGVGRPEYDGVSGTQLLKEVRELLSAHGYVIGNVAAQLVGQ 107 HSP 2 Score: 21.557 bits (44), Expect = 1.585e-14 Identity = 8/20 (40.00%), Postives = 13/20 (65.00%), Query Frame = 1 Query: 598 PKLSPYKETIRTNLSELLGA 657 PK P +E + +SE++GA Sbjct: 109 PKFGPRREEAQQVISEIIGA 128
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_KINRD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=ispF PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.595e-14 Identity = 42/99 (42.42%), Postives = 58/99 (58.59%), Query Frame = 2 Query: 296 RVGHGFDLHRLEPGYPLIIGGINVPHER-GCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLI 589 RVG G D+H+L G P + G+ E G E HSDGDV H DA+ A GL D+G F + P++ GA + + EA RL+ EAG+EIGN+ ++ Sbjct: 6 RVGTGVDVHQLVAGRPCWVAGLLWEGEAAGPEGHSDGDVAAHACCDALFAAAGLGDLGAHFGTARPEFAGASGARLLAEAARLVREAGFEIGNVSVQVV 104
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_CORGB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Corynebacterium glutamicum (strain R) GN=ispF PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.595e-14 Identity = 40/100 (40.00%), Postives = 56/100 (56.00%), Query Frame = 2 Query: 296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 RVG D H++E G P I + GCE HSDGDV+ H +VDA+L A GL D+G P++ G + +KE L++ G+ IGN+ A L+ Q Sbjct: 8 RVGIATDAHQIEAGKPCWIACLLFEGVDGCEGHSDGDVIAHAIVDALLSASGLGDLGSFVGVGRPEYDGVSGTQLLKEVRELLESRGFVIGNVAAQLVGQ 107
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_PLAFX (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Plasmodium falciparum (isolate HB3) GN=ISPF PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 4.426e-14 Identity = 44/119 (36.97%), Postives = 68/119 (57.14%), Query Frame = 2 Query: 296 RVGHGFDLHR---LEPGY----------------PLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 R+G G+D+H+ L+ Y L +GG+ + + +HSDGD++ H +VD+ILGALG DIG +FPD D K K S++F++ A L+ + Y+IGN+D +I Q Sbjct: 65 RIGQGYDIHKIKVLDEEYNTYANNDFNKNEQSFKTLTLGGVKINNVLVL-SHSDGDIIYHSIVDSILGALGSLDIGTLFPDKDEKNKNKNSAIFLRYARLLIYKKNYDIGNVDINVIAQ 182
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_PLAF7 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Plasmodium falciparum (isolate 3D7) GN=ISPF PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 4.426e-14 Identity = 44/119 (36.97%), Postives = 68/119 (57.14%), Query Frame = 2 Query: 296 RVGHGFDLHR---LEPGY----------------PLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 R+G G+D+H+ L+ Y L +GG+ + + +HSDGD++ H +VD+ILGALG DIG +FPD D K K S++F++ A L+ + Y+IGN+D +I Q Sbjct: 65 RIGQGYDIHKIKVLDEEYNTYANNDFNKNEQSFKTLTLGGVKINNVLVL-SHSDGDIIYHSIVDSILGALGSLDIGTLFPDKDEKNKNKNSAIFLRYARLLIYKKNYDIGNVDINVIAQ 182
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_FRASN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Frankia sp. (strain EAN1pec) GN=ispF PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 4.426e-14 Identity = 38/98 (38.78%), Postives = 53/98 (54.08%), Query Frame = 2 Query: 296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLI 589 RVG G D+H E G + + P E G HSDGDV H DA+L A G+ D+G +F P+W GA + + E RL+ E G+ IGN+ ++ Sbjct: 8 RVGTGVDVHPFEQGRECWVACLLWPGETGLAGHSDGDVASHAACDALLTASGIGDLGAVFGTGRPEWSGASGAALLGETARLLAEGGWLIGNVAVQVV 105
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_CORU7 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=ispF PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 4.426e-14 Identity = 40/98 (40.82%), Postives = 55/98 (56.12%), Query Frame = 2 Query: 296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLI 589 RVG D H++EPG P + G+ GCE HSDGDV+ H +VDA+L A GL D+G ++ G I E +L+ E G+ IGN+ A +I Sbjct: 8 RVGIASDAHQVEPGKPCWMAGLLFEDADGCEGHSDGDVVSHVIVDALLSASGLGDLGSFVGVGRKEYDGVSGERLITECRQLLAENGFTIGNVAAQMI 105
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_FRASC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Frankia sp. (strain CcI3) GN=ispF PE=3 SV=2) HSP 1 Score: 77.7962 bits (190), Expect = 5.781e-14 Identity = 39/98 (39.80%), Postives = 54/98 (55.10%), Query Frame = 2 Query: 296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLI 589 RVG G D+H G P + + P E G HSDGDV H DA+L A L D+G++F P++ GA +V + E RL+ AG+ IGN+ +I Sbjct: 8 RVGVGVDVHPFAAGRPCWVACLEWPGETGLAGHSDGDVAAHAACDALLTASCLGDLGRVFGTDRPEYAGASGAVLLAETARLLGAAGWAIGNVSVQVI 105
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_SALTO (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=ispF PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.197e-13 Identity = 37/98 (37.76%), Postives = 51/98 (52.04%), Query Frame = 2 Query: 296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLI 589 RV G D+H E G P + G++ P + G HSD DV H +A+L A L D+G F P+W GA + E+ R + AGY IGN+ +I Sbjct: 6 RVAIGVDMHAFESGRPCWVAGLHWPGQDGLAGHSDADVAAHAACNALLSAAELGDLGANFGVGQPEWSGASGVALLSESARRVRTAGYTIGNVSVQVI 103
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_FRAAA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Frankia alni (strain ACN14a) GN=ispF PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.747e-13 Identity = 38/98 (38.78%), Postives = 53/98 (54.08%), Query Frame = 2 Query: 296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLI 589 RVG G D+H G P + + P E G HSDGDV H DA+L A L D+G++F P++ GA +V + E RL+ G+ IGN+ +I Sbjct: 8 RVGIGVDVHPFAAGRPCWVACLEWPGETGLAGHSDGDVAAHATCDALLTASCLGDLGKVFGTDRPEYAGASGAVLLAETARLLAVGGWVIGNVSVQVI 105 The following BLAST results are available for this feature:
BLAST of FC921312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC921312 ID=FC921312; Name=FC921312; organism=Citrus clementina; type=EST; length=675bpback to top |