FC921312

Overview
NameFC921312
Unique NameFC921312
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_SHELP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=ispF PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.777e-27
Identity = 54/100 (54.00%), Postives = 73/100 (73.00%), Query Frame = 2
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHGFD+H+     PLI+GG+ VP++ G  AHSDGDV+LH + DAILGA+ L DIG+ FPD+DP +KGA S V ++   +L  + GY +GNLD T+I Q
Sbjct:    4 RIGHGFDVHKFGGELPLILGGVEVPYDTGLVAHSDGDVVLHAISDAILGAMALGDIGKHFPDTDPDFKGADSRVLLRHCYQLALDKGYRLGNLDVTIIAQ 103          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_BORPD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=ispF PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.777e-27
Identity = 56/103 (54.37%), Postives = 74/103 (71.84%), Query Frame = 2
Query:  287 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            +PFRVG G+D+H L  G PLIIGG+ +PH  G + HSD DVLLH V DA+LGA GL DIG+ FPD+DP ++GA S V +++AV  +  AG+   N+DAT+  Q
Sbjct:    3 VPFRVGQGYDVHALVAGRPLIIGGVTIPHTHGLQGHSDADVLLHAVTDALLGAAGLGDIGRHFPDTDPAYRGADSRVLLRDAVAKVRAAGWAPVNIDATVHAQ 105          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_THEEB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Thermosynechococcus elongatus (strain BP-1) GN=ispF PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 9.516e-27
Identity = 50/103 (48.54%), Postives = 70/103 (67.96%), Query Frame = 2
Query:  287 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            +  R+G+G+D+HRL P  PLI+GGI + H  G   HSD DVL H ++DA+LGAL L DIG  FP SDP+W GA S V + +   L+ E G+ +GN+DA ++ +
Sbjct:    2 MKIRIGNGYDIHRLVPERPLILGGIRLEHACGLLGHSDADVLTHAIMDALLGALSLGDIGHYFPPSDPQWAGADSQVLLAKVAALIAERGWRVGNIDAVVVAE 104          

HSP 2 Score: 26.9498 bits (58), Expect = 9.516e-27
Identity = 11/24 (45.83%), Postives = 15/24 (62.50%), Query Frame = 1
Query:  589 SSRPKLSPYKETIRTNLSELLGAD 660
            + RPKL PY + +R  L+  LG D
Sbjct:  103 AERPKLKPYLDPMRDRLATTLGID 126          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_CLOD6 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Clostridium difficile (strain 630) GN=ispF PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.516e-27
Identity = 49/100 (49.00%), Postives = 72/100 (72.00%), Query Frame = 2
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+G G+D+H+L     LIIGG+ +PH++G   HSD DVL+H ++D+ILGAL L DIG+ FPD+D ++KGA S   ++    L+   GY+IGN+D+T+I Q
Sbjct:    2 RIGLGYDVHKLTEDRKLIIGGVEIPHDKGLLGHSDADVLIHAIMDSILGALALGDIGKHFPDTDEEYKGADSMKLLEHVYNLITSKGYKIGNIDSTIIAQ 101          

HSP 2 Score: 29.261 bits (64), Expect = 9.516e-27
Identity = 11/26 (42.31%), Postives = 19/26 (73.08%), Query Frame = 1
Query:  598 PKLSPYKETIRTNLSELLGADPXRCN 675
            PK++PY E++R+N+S++L  D    N
Sbjct:  103 PKMAPYIESMRSNISKVLNTDIDNIN 128          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_PSEPW (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pseudomonas putida (strain W619) GN=ispF PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 9.531e-27
Identity = 51/100 (51.00%), Postives = 75/100 (75.00%), Query Frame = 2
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHG+D+HR   G  + +GG+ +PH+ G  AHSDGDVLLH + DA+LGA GL DIG+ FPD+DP++KGA S V ++  V ++   G+++GN+DAT++ Q
Sbjct:    2 RIGHGYDVHRFCDGDFITLGGVRIPHKYGLLAHSDGDVLLHALSDALLGAAGLGDIGKHFPDTDPQFKGADSRVLLRHVVGIVQAKGWKVGNVDATIVAQ 101          

HSP 2 Score: 23.483 bits (49), Expect = 9.531e-27
Identity = 10/26 (38.46%), Postives = 17/26 (65.38%), Query Frame = 1
Query:  598 PKLSPYKETIRTNLSELLGADPXRCN 675
            PK+SP+ ET+R  ++E L  +  + N
Sbjct:  103 PKMSPHIETMRQRIAEDLQVELDQVN 128          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_BACSK (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus clausii (strain KSM-K16) GN=ispF PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.240e-26
Identity = 48/100 (48.00%), Postives = 71/100 (71.00%), Query Frame = 2
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+G GFD+H+L  G PL++GG+++PH +G   HSD DVLLH + DA LGA+G  D+G+ FPD+D  +K A S   + +A +L+  AGY +GN+D T++ Q
Sbjct:    3 RIGQGFDVHQLTEGRPLLLGGVHIPHPKGLLGHSDADVLLHTITDAALGAIGAGDLGKHFPDTDEAFKDADSKHLLSQAWQLVKNAGYTLGNVDCTVMAQ 102          

HSP 2 Score: 29.6462 bits (65), Expect = 1.240e-26
Identity = 12/28 (42.86%), Postives = 18/28 (64.29%), Query Frame = 1
Query:  577 CHADSSRPKLSPYKETIRTNLSELLGAD 660
            C   + +PKL+PY E +R  ++ELL  D
Sbjct:   97 CTVMAQKPKLAPYIEAMRKQIAELLETD 124          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_VIBVY (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Vibrio vulnificus (strain YJ016) GN=ispF PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.732e-26
Identity = 54/100 (54.00%), Postives = 72/100 (72.00%), Query Frame = 2
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHGFD+H+     P+IIGG+ VP+E+G  AHSDGDV LH + DA+LGA+   DIG+ FPD+D KWKGA S   +K+  R + E GY++GN D T+I Q
Sbjct:    3 RIGHGFDVHKFGGEGPVIIGGVAVPYEQGLIAHSDGDVALHALSDALLGAIAAGDIGRHFPDTDDKWKGADSRELLKDVYRRVKEQGYKLGNADVTIIAQ 102          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_PHOLL (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Photorhabdus luminescens subsp. laumondii GN=ispF PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.732e-26
Identity = 54/100 (54.00%), Postives = 71/100 (71.00%), Query Frame = 2
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHGFD+H+     P+IIGG+ +P+E+G  AHSDGDV LH   DA+LGA  L DIG++FPD+DP +KG  S   ++EA   + E GY IGNLD T+I Q
Sbjct:    2 RIGHGFDVHKFGGEGPIIIGGVRIPYEQGLLAHSDGDVALHAATDALLGAAALGDIGKLFPDTDPAFKGVDSRKLLREAYSRIREKGYRIGNLDITIIAQ 101          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_MANSM (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=ispF PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.732e-26
Identity = 54/100 (54.00%), Postives = 72/100 (72.00%), Query Frame = 2
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHGFD+H      PLIIGG+ VP+  G  AHSDGDV LH + DA+LGAL L DIG++FPD+D ++K   S + ++EA R + E GY+IGN+D T+I Q
Sbjct:    3 RIGHGFDVHAFGEARPLIIGGVEVPYHTGFIAHSDGDVALHALTDALLGALALGDIGKLFPDTDMQFKNIDSRILLREAFRRVQEKGYKIGNVDVTIIAQ 102          
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_GEOSW (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Geobacillus sp. (strain WCH70) GN=ispF PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.732e-26
Identity = 57/114 (50.00%), Postives = 78/114 (68.42%), Query Frame = 2
Query:  293 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQDQN*A-HTRRLSE 631
            FR+G GFD+H+L  G PLIIGG+ +P+E+G   HSD DVLLH V DA LGA+G  DIG+ FPD+D  +K A S++ +K+   L+ + GYE+ NLD T+I Q    A H  ++ E
Sbjct:    2 FRIGQGFDVHQLVEGRPLIIGGVRIPYEKGLLGHSDADVLLHAVADACLGAIGAGDIGKHFPDTDECYKDADSALLLKQVWELVKQQGYELANLDCTIIAQKPKMAPHIEQMKE 115          
The following BLAST results are available for this feature:
BLAST of FC921312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_SHELP7.777e-2754.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BORPD7.777e-2754.372-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_THEEB9.516e-2748.542-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_CLOD69.516e-2749.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PSEPW9.531e-2751.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BACSK1.240e-2648.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_VIBVY1.732e-2654.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PHOLL1.732e-2654.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_MANSM1.732e-2654.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_GEOSW1.732e-2650.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionC32103E06EF RVDevelopN Citrus clementina cDNA clone C32103E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921312 ID=FC921312; Name=FC921312; organism=Citrus clementina; type=EST; length=675bp
GGGAGCAGACAGCAGAGCACGAACAGCGTCTCTCCTCTCTTCGTAAAATT
AGATGGTGTTGACGATGGCCGCTCAATCATACACCACCATTCCTCTCTAC
AGCAAAATTACGAATAAGCCACTATGTCCTCCTCCGTTGAGTTTGAAGCC
TCGTAGCTTAACCGCCAAACATCTCCGCACAACACAGTCAACGTCGCTGC
CTCGTATTTCAGTTTCAGCTGCAGCCACTTCTTCCATCGAAGTTAAAGAG
TCATCGGCTTCGATCCAACCGTCCAAATCAAAATCACTGCCTTTTCGTGT
GGGCCACGGGTTTGATCTTCATAGATTGGAGCCTGGCTACCCTCTGATCA
TCGGTGGAATCAATGTTCCCCACGAGAGAGGCTGCGAGGCTCACTCTGAC
GGTGATGTTTTGCTTCACTGTGTTGTGGATGCAATTTTGGGAGCATTGGG
TCTTCCTGATATTGGTCAGATATTTCCTGATTCTGATCCTAAGTGGAAGG
GTGCACCATCCTCTGTTTTTATCAAAGAAGCTGTGAGACTCATGGATGAG
GCCGGCTATGAGATTGGCAACTTGGATGCCACGCTGATTCTTCAAGACCA
AAATTGAGCCCATACAAGGAGACTATCCGAACCAACTTGTCTGAACTGCT
AGGAGCAGACCCCNACCGTTGTAAT
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