FC921312
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_SHELP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=ispF PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 7.777e-27 Identity = 54/100 (54.00%), Postives = 73/100 (73.00%), Query Frame = 2 Query: 296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 R+GHGFD+H+ PLI+GG+ VP++ G AHSDGDV+LH + DAILGA+ L DIG+ FPD+DP +KGA S V ++ +L + GY +GNLD T+I Q Sbjct: 4 RIGHGFDVHKFGGELPLILGGVEVPYDTGLVAHSDGDVVLHAISDAILGAMALGDIGKHFPDTDPDFKGADSRVLLRHCYQLALDKGYRLGNLDVTIIAQ 103
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_BORPD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=ispF PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 7.777e-27 Identity = 56/103 (54.37%), Postives = 74/103 (71.84%), Query Frame = 2 Query: 287 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 +PFRVG G+D+H L G PLIIGG+ +PH G + HSD DVLLH V DA+LGA GL DIG+ FPD+DP ++GA S V +++AV + AG+ N+DAT+ Q Sbjct: 3 VPFRVGQGYDVHALVAGRPLIIGGVTIPHTHGLQGHSDADVLLHAVTDALLGAAGLGDIGRHFPDTDPAYRGADSRVLLRDAVAKVRAAGWAPVNIDATVHAQ 105
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_THEEB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Thermosynechococcus elongatus (strain BP-1) GN=ispF PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 9.516e-27 Identity = 50/103 (48.54%), Postives = 70/103 (67.96%), Query Frame = 2 Query: 287 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 + R+G+G+D+HRL P PLI+GGI + H G HSD DVL H ++DA+LGAL L DIG FP SDP+W GA S V + + L+ E G+ +GN+DA ++ + Sbjct: 2 MKIRIGNGYDIHRLVPERPLILGGIRLEHACGLLGHSDADVLTHAIMDALLGALSLGDIGHYFPPSDPQWAGADSQVLLAKVAALIAERGWRVGNIDAVVVAE 104 HSP 2 Score: 26.9498 bits (58), Expect = 9.516e-27 Identity = 11/24 (45.83%), Postives = 15/24 (62.50%), Query Frame = 1 Query: 589 SSRPKLSPYKETIRTNLSELLGAD 660 + RPKL PY + +R L+ LG D Sbjct: 103 AERPKLKPYLDPMRDRLATTLGID 126
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_CLOD6 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Clostridium difficile (strain 630) GN=ispF PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 9.516e-27 Identity = 49/100 (49.00%), Postives = 72/100 (72.00%), Query Frame = 2 Query: 296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 R+G G+D+H+L LIIGG+ +PH++G HSD DVL+H ++D+ILGAL L DIG+ FPD+D ++KGA S ++ L+ GY+IGN+D+T+I Q Sbjct: 2 RIGLGYDVHKLTEDRKLIIGGVEIPHDKGLLGHSDADVLIHAIMDSILGALALGDIGKHFPDTDEEYKGADSMKLLEHVYNLITSKGYKIGNIDSTIIAQ 101 HSP 2 Score: 29.261 bits (64), Expect = 9.516e-27 Identity = 11/26 (42.31%), Postives = 19/26 (73.08%), Query Frame = 1 Query: 598 PKLSPYKETIRTNLSELLGADPXRCN 675 PK++PY E++R+N+S++L D N Sbjct: 103 PKMAPYIESMRSNISKVLNTDIDNIN 128
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_PSEPW (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pseudomonas putida (strain W619) GN=ispF PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 9.531e-27 Identity = 51/100 (51.00%), Postives = 75/100 (75.00%), Query Frame = 2 Query: 296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 R+GHG+D+HR G + +GG+ +PH+ G AHSDGDVLLH + DA+LGA GL DIG+ FPD+DP++KGA S V ++ V ++ G+++GN+DAT++ Q Sbjct: 2 RIGHGYDVHRFCDGDFITLGGVRIPHKYGLLAHSDGDVLLHALSDALLGAAGLGDIGKHFPDTDPQFKGADSRVLLRHVVGIVQAKGWKVGNVDATIVAQ 101 HSP 2 Score: 23.483 bits (49), Expect = 9.531e-27 Identity = 10/26 (38.46%), Postives = 17/26 (65.38%), Query Frame = 1 Query: 598 PKLSPYKETIRTNLSELLGADPXRCN 675 PK+SP+ ET+R ++E L + + N Sbjct: 103 PKMSPHIETMRQRIAEDLQVELDQVN 128
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_BACSK (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus clausii (strain KSM-K16) GN=ispF PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 1.240e-26 Identity = 48/100 (48.00%), Postives = 71/100 (71.00%), Query Frame = 2 Query: 296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 R+G GFD+H+L G PL++GG+++PH +G HSD DVLLH + DA LGA+G D+G+ FPD+D +K A S + +A +L+ AGY +GN+D T++ Q Sbjct: 3 RIGQGFDVHQLTEGRPLLLGGVHIPHPKGLLGHSDADVLLHTITDAALGAIGAGDLGKHFPDTDEAFKDADSKHLLSQAWQLVKNAGYTLGNVDCTVMAQ 102 HSP 2 Score: 29.6462 bits (65), Expect = 1.240e-26 Identity = 12/28 (42.86%), Postives = 18/28 (64.29%), Query Frame = 1 Query: 577 CHADSSRPKLSPYKETIRTNLSELLGAD 660 C + +PKL+PY E +R ++ELL D Sbjct: 97 CTVMAQKPKLAPYIEAMRKQIAELLETD 124
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_VIBVY (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Vibrio vulnificus (strain YJ016) GN=ispF PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.732e-26 Identity = 54/100 (54.00%), Postives = 72/100 (72.00%), Query Frame = 2 Query: 296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 R+GHGFD+H+ P+IIGG+ VP+E+G AHSDGDV LH + DA+LGA+ DIG+ FPD+D KWKGA S +K+ R + E GY++GN D T+I Q Sbjct: 3 RIGHGFDVHKFGGEGPVIIGGVAVPYEQGLIAHSDGDVALHALSDALLGAIAAGDIGRHFPDTDDKWKGADSRELLKDVYRRVKEQGYKLGNADVTIIAQ 102
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_PHOLL (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Photorhabdus luminescens subsp. laumondii GN=ispF PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.732e-26 Identity = 54/100 (54.00%), Postives = 71/100 (71.00%), Query Frame = 2 Query: 296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 R+GHGFD+H+ P+IIGG+ +P+E+G AHSDGDV LH DA+LGA L DIG++FPD+DP +KG S ++EA + E GY IGNLD T+I Q Sbjct: 2 RIGHGFDVHKFGGEGPIIIGGVRIPYEQGLLAHSDGDVALHAATDALLGAAALGDIGKLFPDTDPAFKGVDSRKLLREAYSRIREKGYRIGNLDITIIAQ 101
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_MANSM (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=ispF PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.732e-26 Identity = 54/100 (54.00%), Postives = 72/100 (72.00%), Query Frame = 2 Query: 296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595 R+GHGFD+H PLIIGG+ VP+ G AHSDGDV LH + DA+LGAL L DIG++FPD+D ++K S + ++EA R + E GY+IGN+D T+I Q Sbjct: 3 RIGHGFDVHAFGEARPLIIGGVEVPYHTGFIAHSDGDVALHALTDALLGALALGDIGKLFPDTDMQFKNIDSRILLREAFRRVQEKGYKIGNVDVTIIAQ 102
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_GEOSW (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Geobacillus sp. (strain WCH70) GN=ispF PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.732e-26 Identity = 57/114 (50.00%), Postives = 78/114 (68.42%), Query Frame = 2 Query: 293 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQDQN*A-HTRRLSE 631 FR+G GFD+H+L G PLIIGG+ +P+E+G HSD DVLLH V DA LGA+G DIG+ FPD+D +K A S++ +K+ L+ + GYE+ NLD T+I Q A H ++ E Sbjct: 2 FRIGQGFDVHQLVEGRPLIIGGVRIPYEKGLLGHSDADVLLHAVADACLGAIGAGDIGKHFPDTDECYKDADSALLLKQVWELVKQQGYELANLDCTIIAQKPKMAPHIEQMKE 115 The following BLAST results are available for this feature:
BLAST of FC921312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC921312 ID=FC921312; Name=FC921312; organism=Citrus clementina; type=EST; length=675bpback to top |