FC921312

Overview
NameFC921312
Unique NameFC921312
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_ECOSE (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Escherichia coli (strain SE11) GN=ispF PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.955e-26
Identity = 53/100 (53.00%), Postives = 72/100 (72.00%), Query Frame = 2 
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I Q
Sbjct:    2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQ 101
[Close]
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_ECOLU (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=ispF PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.955e-26
Identity = 53/100 (53.00%), Postives = 72/100 (72.00%), Query Frame = 2 
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I Q
Sbjct:    2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQ 101
[Close]
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_ECOLI (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Escherichia coli (strain K12) GN=ispF PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.955e-26
Identity = 53/100 (53.00%), Postives = 72/100 (72.00%), Query Frame = 2 
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I Q
Sbjct:    2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQ 101
[Close]
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_ECOLC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=ispF PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.955e-26
Identity = 53/100 (53.00%), Postives = 72/100 (72.00%), Query Frame = 2 
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I Q
Sbjct:    2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQ 101
[Close]
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_ECOL6 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Escherichia coli O6 GN=ispF PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.955e-26
Identity = 53/100 (53.00%), Postives = 72/100 (72.00%), Query Frame = 2 
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I Q
Sbjct:    2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYALGNVDVTIIAQ 101
[Close]
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_ECOK1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Escherichia coli O1:K1 / APEC GN=ispF PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.955e-26
Identity = 53/100 (53.00%), Postives = 72/100 (72.00%), Query Frame = 2 
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I Q
Sbjct:    2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPTFKGADSRELLREAWRRIQAKGYALGNVDVTIIAQ 101
[Close]
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_ECOHS (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Escherichia coli O9:H4 (strain HS) GN=ispF PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.955e-26
Identity = 53/100 (53.00%), Postives = 72/100 (72.00%), Query Frame = 2 
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I Q
Sbjct:    2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQ 101
[Close]
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_ECODH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Escherichia coli (strain K12 / DH10B) GN=ispF PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.955e-26
Identity = 53/100 (53.00%), Postives = 72/100 (72.00%), Query Frame = 2 
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I Q
Sbjct:    2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQ 101
[Close]
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_ECOBW (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Escherichia coli (strain K12 / BW2952) GN=ispF PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.955e-26
Identity = 53/100 (53.00%), Postives = 72/100 (72.00%), Query Frame = 2 
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I Q
Sbjct:    2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQ 101
[Close]
BLAST of FC921312 vs. ExPASy Swiss-Prot
Match: ISPF_ECO8A (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Escherichia coli O8 (strain IAI1) GN=ispF PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.955e-26
Identity = 53/100 (53.00%), Postives = 72/100 (72.00%), Query Frame = 2 
Query:  296 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQ 595
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I Q
Sbjct:    2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQ 101
The following BLAST results are available for this feature:
BLAST of FC921312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_ECOSE2.955e-2653.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_ECOLU2.955e-2653.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_ECOLI2.955e-2653.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_ECOLC2.955e-2653.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_ECOL62.955e-2653.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_ECOK12.955e-2653.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_ECOHS2.955e-2653.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_ECODH2.955e-2653.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_ECOBW2.955e-2653.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_ECO8A2.955e-2653.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionC32103E06EF RVDevelopN Citrus clementina cDNA clone C32103E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921312 ID=FC921312; Name=FC921312; organism=Citrus clementina; type=EST; length=675bp
GGGAGCAGACAGCAGAGCACGAACAGCGTCTCTCCTCTCTTCGTAAAATT
AGATGGTGTTGACGATGGCCGCTCAATCATACACCACCATTCCTCTCTAC
AGCAAAATTACGAATAAGCCACTATGTCCTCCTCCGTTGAGTTTGAAGCC
TCGTAGCTTAACCGCCAAACATCTCCGCACAACACAGTCAACGTCGCTGC
CTCGTATTTCAGTTTCAGCTGCAGCCACTTCTTCCATCGAAGTTAAAGAG
TCATCGGCTTCGATCCAACCGTCCAAATCAAAATCACTGCCTTTTCGTGT
GGGCCACGGGTTTGATCTTCATAGATTGGAGCCTGGCTACCCTCTGATCA
TCGGTGGAATCAATGTTCCCCACGAGAGAGGCTGCGAGGCTCACTCTGAC
GGTGATGTTTTGCTTCACTGTGTTGTGGATGCAATTTTGGGAGCATTGGG
TCTTCCTGATATTGGTCAGATATTTCCTGATTCTGATCCTAAGTGGAAGG
GTGCACCATCCTCTGTTTTTATCAAAGAAGCTGTGAGACTCATGGATGAG
GCCGGCTATGAGATTGGCAACTTGGATGCCACGCTGATTCTTCAAGACCA
AAATTGAGCCCATACAAGGAGACTATCCGAACCAACTTGTCTGAACTGCT
AGGAGCAGACCCCNACCGTTGTAAT
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