FC921313

Overview
NameFC921313
Unique NameFC921313
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_PELCD (Uroporphyrinogen decarboxylase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=hemE PE=3 SV=3)

HSP 1 Score: 132.494 bits (332), Expect = 1.995e-30
Identity = 69/166 (41.57%), Postives = 98/166 (59.04%), Query Frame = 3
Query:  180 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            + A  G  V R PVWLMRQAGRY+  Y+ I E+   F E  +  +L  E++LQP      D  ILFSDIL P+  M    ++     PV+  P+ T A+V+ +R   PE+ VP+V + + +LR E++    ++GF GAPFTL  Y+VEG  S+HF  +KRL +  P
Sbjct:    9 INACYGRPVTRTPVWLMRQAGRYLPQYRKIRERV-KFLELCKTPELAAEVTLQPVDALGVDAAILFSDILIPIEAMGQ--NLFYRPAPVLEPPVRTAADVEALRVLQPEQDVPFVLETIRLLRRELDGRVPLIGFGGAPFTLACYMVEGAGSRHFLALKRLMYQAP 171          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_MYXXD (Uroporphyrinogen decarboxylase OS=Myxococcus xanthus (strain DK 1622) GN=hemE PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.995e-30
Identity = 70/167 (41.92%), Postives = 102/167 (61.08%), Query Frame = 3
Query:  177 LLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            LL+A R +  +  PVWLMRQAGRY+  Y+ I     +F +  ++ DL  E+++QP      D  I+FSDIL P+  M I  ++   KGP   DP+ + A++D++   DP E   +V +A+   R+ +N+   V+GF GAPFTL +Y+VEGG SK +  IKRL F QP
Sbjct:    5 LLRAARRQPTDTTPVWLMRQAGRYLPEYRAIRGNI-AFLDLCKHPDLAAEVTVQPVTRLGVDAAIIFSDILIPVEAMGITLEL-GDKGPHFPDPVRSAADIDKLGVPDPVEGTGFVAEAIRRTRKALNDSVPVIGFAGAPFTLAAYMVEGGGSKSYILIKRLMFEQP 169          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_LISMH (Uroporphyrinogen decarboxylase OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=hemE PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.995e-30
Identity = 69/172 (40.12%), Postives = 103/172 (59.88%), Query Frame = 3
Query:  162 VAEPMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            +   + LKA R E V+R PVW MRQAGR    Y+ + EKY  F E +   ++   ++  P   +  D  IL+ DI+TPL GM +  +I  G GPVI +PI T  +V+++  F PE  VPYV   + +L +++  +  ++GF GAPFTL SY++EGG SK++ Q K   + +P
Sbjct:    4 ITNDLFLKAARKEQVDRIPVWYMRQAGRSQPEYRKLKEKYSLF-EITHQPEICAYVTKLPVDQYGVDAAILYKDIMTPLPGMGVDVEIKSGIGPVIHNPIRTFQDVEKLAIFKPEIEVPYVLDTIKLLADDM-LDVPLIGFAGAPFTLASYMIEGGPSKNYHQTKSFMYREP 173          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_LISIN (Uroporphyrinogen decarboxylase OS=Listeria innocua GN=hemE PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.995e-30
Identity = 69/172 (40.12%), Postives = 103/172 (59.88%), Query Frame = 3
Query:  162 VAEPMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            +   + LKA R E V+R PVW MRQAGR    Y+ + EKY  F E +   ++   ++  P   +  D  IL+ DI+TPL GM +  +I  G GPVI +PI T  +V+++  F PE  VPYV   + +L +++  +  ++GF GAPFTL SY++EGG SK++ Q K   + +P
Sbjct:    4 ITNDLFLKAARKEQVDRIPVWYMRQAGRSQPEYRKLKEKYSLF-EITHQPEICAYVTKLPVDQYGVDAAILYKDIMTPLPGMGVDVEIKSGIGPVIHNPIRTFQDVEKLTIFKPEIEVPYVLDTIKLLADDM-LDVPLIGFAGAPFTLASYMIEGGPSKNYHQTKSFMYREP 173          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_FLAJ1 (Uroporphyrinogen decarboxylase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=hemE PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.995e-30
Identity = 71/168 (42.26%), Postives = 102/168 (60.71%), Query Frame = 3
Query:  174 MLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            + LKA++GE V+RPPVW+MRQAGRY+  +  + +KY  F  R +  +L  EI++QP     PD  ILFSDIL     M I   + +  GP I +PI + A+V +V   D +ES+ YV  A+ + +E +N+E  ++GF G+P+T+  Y VEG  SK F   K   FS P
Sbjct:    6 LFLKALKGETVQRPPVWMMRQAGRYLPEFIELRDKYDFFT-RCQTPELAAEITVQPIRRIAPDAAILFSDILVVPQAMGIEVLMKENIGPFIPNPIRSMADVQRVYVPDIQESLGYVMDAIKLTKEMLNDEVPLIGFAGSPWTIFCYAVEGRGSKSFDMAKGFCFSNP 172          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_XANOR (Uroporphyrinogen decarboxylase OS=Xanthomonas oryzae pv. oryzae GN=hemE PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.606e-30
Identity = 65/167 (38.92%), Postives = 101/167 (60.48%), Query Frame = 3
Query:  177 LLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            LL+A+  + V+R PVWLMRQAGRY+  Y+    +  SF   ++N D+  E++LQP   F  D  ILFSDILT    M +    ++G+GP    P+   A + ++   D E  + YV  A+ ++R E++    ++GF G+P+TL  Y++EGG SK + +IK +AF+ P
Sbjct:    7 LLRALNRQPVDRTPVWLMRQAGRYLPEYRATRARAGSFLSMAKNPDIACEVTLQPLQRFPLDAAILFSDILTIPDAMGLELYFVEGEGPKFRHPVRDAAAIHRLGVPDMETELRYVMDAVRVIRRELDGSVPLIGFSGSPWTLACYMIEGGGSKEYARIKAMAFNAP 173          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_XANOP (Uroporphyrinogen decarboxylase OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=hemE PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.606e-30
Identity = 65/167 (38.92%), Postives = 101/167 (60.48%), Query Frame = 3
Query:  177 LLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            LL+A+  + V+R PVWLMRQAGRY+  Y+    +  SF   ++N D+  E++LQP   F  D  ILFSDILT    M +    ++G+GP    P+   A + ++   D E  + YV  A+ ++R E++    ++GF G+P+TL  Y++EGG SK + +IK +AF+ P
Sbjct:    7 LLRALNRQPVDRTPVWLMRQAGRYLPEYRATRARAGSFLSMAKNPDIACEVTLQPLQRFPLDAAILFSDILTIPDAMGLELYFVEGEGPKFRHPVRDAAAIHRLGVPDMETELRYVMDAVRVIRRELDGSVPLIGFSGSPWTLACYMIEGGGSKEYARIKAMAFNAP 173          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_XANOM (Uroporphyrinogen decarboxylase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=hemE PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.606e-30
Identity = 65/167 (38.92%), Postives = 101/167 (60.48%), Query Frame = 3
Query:  177 LLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            LL+A+  + V+R PVWLMRQAGRY+  Y+    +  SF   ++N D+  E++LQP   F  D  ILFSDILT    M +    ++G+GP    P+   A + ++   D E  + YV  A+ ++R E++    ++GF G+P+TL  Y++EGG SK + +IK +AF+ P
Sbjct:    7 LLRALNRQPVDRTPVWLMRQAGRYLPEYRATRARAGSFLSMAKNPDIACEVTLQPLQRFPLDAAILFSDILTIPDAMGLELYFVEGEGPKFRHPVRDAAAIHRLGVPDMETELRYVMDAVRVIRRELDGSVPLIGFSGSPWTLACYMIEGGGSKEYARIKAMAFNAP 173          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_PSEHT (Uroporphyrinogen decarboxylase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=hemE PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.404e-30
Identity = 65/166 (39.16%), Postives = 103/166 (62.05%), Query Frame = 3
Query:  180 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            L+A+  + V+  PVW+MRQAGRY+  Y+    +   F     N +L  E++LQP   +  D  ILFSDILT    M +      G+GP    PI++ ++V ++ + DP + + YV  A++ +R E+  E  ++GF G+P+TL +Y+VEGGSSK F +IK++AF++P
Sbjct:   10 LRALAKQPVDVTPVWMMRQAGRYLPEYRATRAQAGDFMSLCRNAELACEVTLQPLRRYPLDAAILFSDILTIPDAMGLGLYFETGEGPKFERPISSLSDVKKIPKLDPNDDLGYVMNAVSTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKVFGKIKKMAFAEP 175          
BLAST of FC921313 vs. ExPASy Swiss-Prot
Match: DCUP_CYTH3 (Uroporphyrinogen decarboxylase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=hemE PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.404e-30
Identity = 63/168 (37.50%), Postives = 101/168 (60.12%), Query Frame = 3
Query:  174 MLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLVSYVVEGGSSKHFXQIKRLAFSQP 677
            ++L+A RGE VER PVWLMRQAGR +  Y+ + EK   F E      L  E+++QP  +   D  I+FSDIL     M +P+++ + KGP     I + A++D +   D  + + YV  A+ +  +E+N    ++GF GAPFT+++Y++EG  SK F + +R  +++P
Sbjct:    7 LILRAARGEAVERTPVWLMRQAGRILPEYRAVREKLSGFIELCTTPALAAEVTIQPVDILGVDAAIIFSDILVIPEAMGLPYEMQESKGPFFPKVITSAADIDALLATDAADHLTYVYDAIELAVKELNGRVPLIGFAGAPFTILAYMIEGQGSKTFSKARRFLYTEP 174          
The following BLAST results are available for this feature:
BLAST of FC921313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DCUP_PELCD1.995e-3041.57Uroporphyrinogen decarboxylase OS=Pelobacter carbi... [more]
DCUP_MYXXD1.995e-3041.92Uroporphyrinogen decarboxylase OS=Myxococcus xanth... [more]
DCUP_LISMH1.995e-3040.12Uroporphyrinogen decarboxylase OS=Listeria monocyt... [more]
DCUP_LISIN1.995e-3040.12Uroporphyrinogen decarboxylase OS=Listeria innocua... [more]
DCUP_FLAJ11.995e-3042.26Uroporphyrinogen decarboxylase OS=Flavobacterium j... [more]
DCUP_XANOR2.606e-3038.92Uroporphyrinogen decarboxylase OS=Xanthomonas oryz... [more]
DCUP_XANOP2.606e-3038.92Uroporphyrinogen decarboxylase OS=Xanthomonas oryz... [more]
DCUP_XANOM2.606e-3038.92Uroporphyrinogen decarboxylase OS=Xanthomonas oryz... [more]
DCUP_PSEHT3.404e-3039.16Uroporphyrinogen decarboxylase OS=Pseudoalteromona... [more]
DCUP_CYTH33.404e-3037.50Uroporphyrinogen decarboxylase OS=Cytophaga hutchi... [more]

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Properties
Property NameValue
Genbank descriptionC32103E07EF RVDevelopN Citrus clementina cDNA clone C32103E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921313 ID=FC921313; Name=FC921313; organism=Citrus clementina; type=EST; length=678bp
GAAAGTTTCTAAGATCGAATCAAAGGCCCAACACAATGTCCTGCTCTTCA
ATTTCGGCTATTTCAAATTTTCCACTGTATTCCTCTTCTCACTCCAATTC
AAACTCCCGATATGTCCGCTGCGCCGTCGGAGGGACTGTAGCGGAACCGA
AAAATGTTTCTGTTGCCGAACCCATGTTGCTGAAAGCTGTTCGAGGAGAA
GATGTTGAAAGACCTCCAGTTTGGCTTATGAGGCAAGCAGGGAGGTACAT
GAAGAGTTATCAAATCATCTGCGAGAAGTATCCTTCATTTCGTGAAAGAT
CAGAAAATGTTGATCTTGTTGTGGAAATTTCTCTTCAGCCGTGGCATGTT
TTTAAGCCAGATGGTGTCATTTTGTTCTCAGACATTTTAACTCCTCTTTC
TGGGATGAATATACCTTTTGACATTATCAAGGGTAAGGGTCCTGTCATAT
TTGATCCTATAAACACAGATGCAGAAGTTGACCAAGTGAGAGAATTTGAT
CCTGAGGAGTCAGTTCCATATGTTGGGAAAGCATTGACAATCTTGCGAGA
AGAGGTAAACAATGAAGCAGCAGTTCTGGGTTTTGTTGGGGCTCCTTTCA
CCCTGGTGTCATATGTGGTTGAGGGTGGTTCATCGAAGCACTTCNAGCAA
ATAAAGCGACTAGCTTTCTCTCAACCCA
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