FC921341

Overview
NameFC921341
Unique NameFC921341
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921341 vs. ExPASy Swiss-Prot
Match: PP2B6_ARATH (Putative F-box protein PP2-B6 OS=Arabidopsis thaliana GN=PP2B6 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.989e-14
Identity = 51/162 (31.48%), Postives = 76/162 (46.91%), Query Frame = 2
Query:  203 MGANFSALFRDPNGATPGSAAAKPG---LGDLPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLIE--EVFGDLKKDLGKREIYARLCRMNSF-DGGTKKVWLDKSTGGVCLSISAKGLAITGIDDRRYWNHIPTEESRFTSVAYL 670
            +G++      D      G     PG     DLPE C++ II    P ++C  A ++++F  A   D +WE  LP  Y +LI    VF        K+++Y  LC      + G K  WL+ ++G  C+ ++AK L ITG ++  YW  I   ES F  V  L
Sbjct:   17 LGSSSKVQKHDVESIGGGGGEIVPGHSPFDDLPEDCISNIISFTSPRDVCVSASVSKSFAHAVQCDSIWEKFLPSEYESLIPPWRVFS------SKKDLYFTLCYDPVLVEDGKKSFWLETASGKKCVLLAAKELWITGGNNPEYWQWIELCESSFEKVPEL 172          
BLAST of FC921341 vs. ExPASy Swiss-Prot
Match: PP2B3_ARATH (F-box protein PP2-B3 OS=Arabidopsis thaliana GN=PP2B3 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 5.989e-14
Identity = 43/124 (34.68%), Postives = 70/124 (56.45%), Query Frame = 2
Query:  254 GSAAAKPGLGD-LPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLIEEVFGDLKKDLGKREIYARLCRMN-SFDGGTKKVWLDKSTGGVCLSISAKGLAITGIDDRRY 619
            G    +P   D LPE+C++ II    P + C  A +++AF  A  +D VWE  LP +Y +L+ E     +  L K+E+   LCR+    +GG K  WLDK++G  C+ +S KG+ I+ ++  ++
Sbjct:    4 GEIVPRPSPFDGLPENCISNIISFTTPRDACFAASVSKAFESAVQSDSVWEKFLPLDYSSLVPE----SRVFLSKKELCFSLCRVPLLIEGGKKSFWLDKTSGEKCIMLSPKGMVISWVNSPQF 123          
BLAST of FC921341 vs. ExPASy Swiss-Prot
Match: PP2B2_ARATH (Putative F-box protein PP2-B2 OS=Arabidopsis thaliana GN=PP2B2 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.822e-14
Identity = 48/149 (32.21%), Postives = 72/149 (48.32%), Query Frame = 2
Query:  254 GSAAAKPGLGD-LPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLI--EEVFGDLKKDLGKREIYARLC-RMNSFDGGTKKVWLDKSTGGVCLSIS-AKGLAITGIDDRRYWNHIPTEESRFTSVAYLQQIWW 685
            G+  + P L D LPE C++ II    P + C  A +++ F  A  +D VW+  LP +Y +L+    VF        K+E+Y  +C      + G K  WL+K  G  C  +S  K + IT +   +YW  I   E+RF  V  L  + W
Sbjct:   33 GAIISGPSLFDNLPEDCISNIISFTSPRDACVAASVSKTFESAVNSDSVWDKFLPSDYSSLVPPSRVFS------SKKELYFAICDNPVLVEDGGKSFWLEKENGKKCFMLSPKKSMWITWVSTPQYWRWISIPEARFEEVPELLNVCW 175          
BLAST of FC921341 vs. ExPASy Swiss-Prot
Match: P2B12_ARATH (Putative F-box protein PP2-B12 OS=Arabidopsis thaliana GN=PP2B12 PE=4 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.822e-14
Identity = 38/135 (28.15%), Postives = 67/135 (49.63%), Query Frame = 2
Query:  284 DLPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLIEEVFGDLKKDLGKREIYARLCRMN-SFDGGTKKVWLDKSTGGVCLSISAKGLAITGIDDRRYWNHIPTEESRFTSVAYLQQIWW 685
            DLPE C+A +I    P + C+++ +++  R A+ ++  WE  LP +YR  I+            ++++ R C      + G    W++K +G  C  +SA+ L I  +D   +W  +   +SRF  VA L  + W
Sbjct:    5 DLPEECIATMISFTSPFDACRISAVSKLLRSAADSNTTWERFLPSDYRMYIDNSL----SRFSNKQLFLRFCESPLLIEDGRTSFWMEKRSGKKCWMLSARKLDIVWVDSPEFWIWVSIPDSRFEEVAGLLMVCW 135          
BLAST of FC921341 vs. ExPASy Swiss-Prot
Match: SKIP3_ARATH (F-box protein SKIP3 OS=Arabidopsis thaliana GN=SKIP3 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.022e-13
Identity = 48/141 (34.04%), Postives = 74/141 (52.48%), Query Frame = 2
Query:  278 LGDLPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLI--EEVFGDLKKDLGKREIYARLCR-MNSFDGGTKKVWLDKSTGGVCLSISAKGLAITGIDD---RRYWNHIPTEESRFTSVAYLQQIW 682
            L  LPE C++ II    P + C  A +++ F  A  +D VWE  LP +Y +LI    VF        K+E+Y  LC      + G   +WL+K++G  C+ +SA  + ++ + D   R  W  IP  ESRF +VA L++ +
Sbjct:   24 LDSLPEGCISNIISFTSPEDACVAAAVSKIFESAVKSDIVWEKFLPTDYESLITPSRVFS------SKKELYFSLCNDPLLIEDGKMSLWLEKASGKRCIMLSATAMNLSSMADMSQRFLW--IPCPESRFETVAALREAY 156          
BLAST of FC921341 vs. ExPASy Swiss-Prot
Match: P2B14_ARATH (F-box protein PP2-B14 OS=Arabidopsis thaliana GN=PP2B14 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.276e-13
Identity = 42/128 (32.81%), Postives = 66/128 (51.56%), Query Frame = 2
Query:  287 LPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLIEEVFGDLKKDLGKREIYARLCRMNSFDGGTKKVWLDKSTGGVCLSISAKGLAITGIDDRRYWNHIPTEESRFTSVAYL 670
            LPE+C+A I+    P +    + ++  FR A  +DFVWE  LP +Y++LI +          K+EIY  LC     D   K   ++K +G +   +SA+ ++IT  D   YW+     +SRF+  A L
Sbjct:    4 LPEACIANILAFTSPADAFSSSEVSSVFRLAGDSDFVWEKFLPSDYKSLISQSTDHHWNISSKKEIYRCLCDSLLIDNARKLFKINKFSGKISYVLSARDISITHSDHASYWSWSNVSDSRFSESAEL 131          
BLAST of FC921341 vs. ExPASy Swiss-Prot
Match: PP2B7_ARATH (F-box protein PP2-B7 OS=Arabidopsis thaliana GN=PP2B7 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.648e-13
Identity = 37/108 (34.26%), Postives = 61/108 (56.48%), Query Frame = 2
Query:  278 LGDLPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLIEEVFGDLKKDLGKREIYARLCRMNSFDGGTKK-VWLDKSTGGVCLSISAKGLAIT 598
            LGDLPE C++LII    P + C  A +++ F  A  +D VWE  +PP Y +L+       +    K+E++  LC  +     +KK +W++K+TG  C+ +SA  L ++
Sbjct:   40 LGDLPEECISLIISFTSPRDACVFALVSKTFESAVQSDIVWEKFIPPEYESLLSR----SQHFSSKKELFFALCDESVLINVSKKDLWIEKATGKRCMMLSASALNLS 143          
BLAST of FC921341 vs. ExPASy Swiss-Prot
Match: P2B13_ARATH (F-box protein PP2-B13 OS=Arabidopsis thaliana GN=PP2B13 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.292e-12
Identity = 42/128 (32.81%), Postives = 66/128 (51.56%), Query Frame = 2
Query:  287 LPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLIEEVFGDLKKDLGKREIYARLCRMNSFDGGTKKVWLDKSTGGVCLSISAKGLAITGIDDRRYWNHIPTEESRFTSVAYL 670
            LPE+CVA I+    P +    + ++  FR A  +DFVWE  LP +Y++LI +     +    K+EIY  LC     D   K   ++K +G +   +SA+ ++IT  D   Y +     +SRF+  A L
Sbjct:    4 LPEACVANILAFTSPADAFSSSEVSSVFRLAGDSDFVWEKFLPSHYKSLISQSTDHHRIFSSKKEIYRCLCDSLLIDNARKLFKINKFSGKISYILSARDISITYSDHASYCSWSNVSDSRFSESAEL 131          
BLAST of FC921341 vs. ExPASy Swiss-Prot
Match: P2B11_ARATH (F-box protein PP2-B11 OS=Arabidopsis thaliana GN=PP2B11 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 37/136 (27.21%), Postives = 67/136 (49.26%), Query Frame = 2
Query:  278 LGDLPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLIEEVFGDLKKDLGKREIYARLCRMNSFDGGTKKVWLDKSTGGVCLSISAKGLAITGIDDRRYWNHIPTEESRFTSVAYLQQIWW 685
            + +LPE C+A I+    P ++C+L+ ++  FR A+ +D VW   LP ++        G       K+  ++ +      +G      L++ +G  C  ++A+ L I    ++RYW+ I    +RF  VA L  +WW
Sbjct:    1 MNNLPEDCIAKILSLTTPLDVCRLSAVSSIFRSAAGSDDVWNHFLPADFPAGFAAPAG---LPTRKQLFFSLVDNPLLINGTLLSFSLERKSGNKCYMMAARALNIVWGHEQRYWHWISLPNTRFGEVAELIMVWW 133          
The following BLAST results are available for this feature:
BLAST of FC921341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
PP2B6_ARATH5.989e-1431.48Putative F-box protein PP2-B6 OS=Arabidopsis thali... [more]
PP2B3_ARATH5.989e-1434.68F-box protein PP2-B3 OS=Arabidopsis thaliana GN=PP... [more]
PP2B2_ARATH7.822e-1432.21Putative F-box protein PP2-B2 OS=Arabidopsis thali... [more]
P2B12_ARATH7.822e-1428.15Putative F-box protein PP2-B12 OS=Arabidopsis thal... [more]
SKIP3_ARATH1.022e-1334.04F-box protein SKIP3 OS=Arabidopsis thaliana GN=SKI... [more]
P2B14_ARATH2.276e-1332.81F-box protein PP2-B14 OS=Arabidopsis thaliana GN=P... [more]
PP2B7_ARATH8.648e-1334.26F-box protein PP2-B7 OS=Arabidopsis thaliana GN=PP... [more]
P2B13_ARATH4.292e-1232.81F-box protein PP2-B13 OS=Arabidopsis thaliana GN=P... [more]
P2B11_ARATH4.745e-1127.21F-box protein PP2-B11 OS=Arabidopsis thaliana GN=P... [more]

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Properties
Property NameValue
Genbank descriptionC32103H01EF RVDevelopN Citrus clementina cDNA clone C32103H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921341 ID=FC921341; Name=FC921341; organism=Citrus clementina; type=EST; length=686bp
CGGGGGTCCGTGAGACAAGACAACATCTGCAAGTTCCCTCTGAACCTTTT
TGCTATCTCTCTCTCTTTCTTTGAAGGCCTCCCTTTTGATTCTCAGAACT
TTCTAGTTCTCTGCGTTCTTTCTTACTTTCTTTCGTTCTTTCTTTTCTTT
TTCCTCTGTTTTTTGGGGCTTGCTCTGTTTTTTAATTTTGATTTTGAGCT
TGATGGGTGCAAATTTTTCTGCTTTATTTCGGGACCCAAACGGCGCAACA
CCTGGTTCCGCAGCAGCAAAGCCGGGACTGGGTGATTTGCCGGAGAGTTG
TGTGGCTTTGATTATTGGGTCTTTGGATCCGACAGAGATTTGCAAATTGG
CTAGATTGAATAGAGCTTTTCGTGGGGCTTCTTTGGCCGATTTCGTCTGG
GAATCTAAATTGCCTCCTAATTATCGAACTTTGATTGAAGAAGTGTTTGG
TGATTTGAAAAAGGATTTGGGTAAGAGAGAGATTTATGCCAGGCTTTGTC
GAATGAATTCTTTTGATGGTGGCACCAAGAAAGTTTGGCTAGATAAGAGT
ACTGGGGGTGTCTGTCTATCCATTTCGGCCAAGGGGCTGGCGATTACTGG
TATTGATGATCGGAGATATTGGAATCATATTCCAACCGAGGAATCTAGAT
TCACTTCAGTTGCATATCTTCAGCAAATTTGGTGGT
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