FC921347

Overview
NameFC921347
Unique NameFC921347
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921347 vs. ExPASy Swiss-Prot
Match: HDA6_CAEEL (Histone deacetylase 6 OS=Caenorhabditis elegans GN=hda-6 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.092e-24
Identity = 61/181 (33.70%), Postives = 99/181 (54.70%), Query Frame = 2
Query:  158 LLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPRRCVVLNSKE-AKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELN--SAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGIK*ILIVDWDVHHGNSTQ 691
            + ++E    H   + D HPE P R + I   L+ +G+  +CV  N +  A ++ +  VHT+  +  ++   + + +   +    + NSIYL   + + A  A G+V++  + + E +    +A  IVRPPGHHA   ++ GFC++NNVAVAA +          K +LI+DWDVHHGN TQ
Sbjct:  429 IYFNEGDDAHFDLEEDNHPEKPARTRRILKTLRESGVLEKCVDRNCERIATNEEIRLVHTKKMLEHLRTTETMKDEELMEEAEKEFNSIYLTRDTLKVARKAVGAVLQSVDEIFEKDAGQRNALVIVRPPGHHASASKSSGFCIFNNVAVAAKYAQRRHK---AKRVLILDWDVHHGNGTQ 606          

HSP 2 Score: 98.2117 bits (243), Expect = 4.746e-20
Identity = 63/178 (35.39%), Postives = 91/178 (51.12%), Query Frame = 2
Query:  164 YDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPRRCVVL-NSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGIK*ILIVDWDVHHGNSTQR 694
            +++   +H       HPE+ +RI  I   L    I  +C VL N  E  D +L   H ++ V  +   S K+     +    K +S+++ E S + A      V ++  R+   E ++ FA+VRPPGHHA+     GFCL+NNVA AA     E    G + ILIVD DVHHG+ TQR
Sbjct:   19 FNQTQNEHENTVCPTHPESSDRILKIKEALTKTKILEKCTVLTNFLEIDDADLEVTHDKSMVKDLME-SEKKTQEDINSQCEKYDSVFMTENSMKVAKDGVACVRDLTNRIMANEASNGFAVVRPPGHHADSVSPCGFCLFNNVAQAA----EEAFFSGAERILIVDLDVHHGHGTQR 191          
BLAST of FC921347 vs. ExPASy Swiss-Prot
Match: HDA10_HUMAN (Histone deacetylase 10 OS=Homo sapiens GN=HDAC10 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.426e-24
Identity = 56/165 (33.94%), Postives = 101/165 (61.21%), Query Frame = 2
Query:  197 DGDYHPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGIK*ILIVDWDVHHGNSTQ 691
            D +   E P R+ A  ++L+  G+ +RC+ L+++EA ++ L  VH+  +V+L++       +  +  ++ + ++IY +  +   A LAAG+ +++ + V  G + +  A+VRPPGHH +   A GFC++NNVA+AA+   + + + G+  IL+VDWDVHHG   Q
Sbjct:   20 DPECEIERPERLTAALDRLRQRGLEQRCLRLSAREASEEELGLVHSPEYVSLVRETQVLGKEELQ-ALSGQFDAIYFHPSTFHCARLAAGAGLQLVDAVLTGAVQNGLALVRPPGHHGQRAAANGFCVFNNVAIAAA---HAKQKHGLHRILVVDWDVHHGQGIQ 180          
BLAST of FC921347 vs. ExPASy Swiss-Prot
Match: HDA10_MOUSE (Histone deacetylase 10 OS=Mus musculus GN=Hdac10 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.207e-23
Identity = 55/165 (33.33%), Postives = 99/165 (60.00%), Query Frame = 2
Query:  197 DGDYHPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGIK*ILIVDWDVHHGNSTQ 691
            D +   E P R+ A  + L+  G+  RC+ L++ EA ++ L  VH+  ++ L++   +   +     ++ + +++Y +  +   A LAAG+ +++ + V  G +++  A+VRPPGHH++   A GFC++NNVA+AA    + + + G++ ILIVDWDVHHG   Q
Sbjct:   20 DPECEIECPERLTAALDGLRQRGLEERCLCLSACEASEEELGLVHSPEYIALVQKTQTLDKEELH-ALSKQYDAVYFHPDTFHCARLAAGAALQLVDAVLTGAVHNGLALVRPPGHHSQRAAANGFCVFNNVALAAK---HAKQKYGLQRILIVDWDVHHGQGIQ 180          
BLAST of FC921347 vs. ExPASy Swiss-Prot
Match: HDA10_RAT (Histone deacetylase 10 OS=Rattus norvegicus GN=Hdac10 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.022e-22
Identity = 55/165 (33.33%), Postives = 96/165 (58.18%), Query Frame = 2
Query:  197 DGDYHPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGIK*ILIVDWDVHHGNSTQ 691
            D +   E P R+ A  + L+  G+  RC  L+  EA ++ L  VH+  ++ L++   +   +     ++ + +++Y +  +   A LAAG+ + + + V  G +++  A+VRPPGHH++   A GFC++NNVA+AA    + + + G++ ILIVDWDVHHG   Q
Sbjct:   20 DPECEIECPERLTAALDGLRQRGLEERCQCLSVCEASEEELGLVHSPEYIALVQKTQTLDKEELHT-LSKQYDAVYFHPDTFHCARLAAGAALRLVDAVLTGAVHNGVALVRPPGHHSQRAAANGFCVFNNVAIAAR---HAKQKYGLQRILIVDWDVHHGQGIQ 180          
BLAST of FC921347 vs. ExPASy Swiss-Prot
Match: Y130_ARCFU (Uncharacterized protein AF_0130 OS=Archaeoglobus fulgidus GN=AF_0130 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.883e-22
Identity = 65/185 (35.14%), Postives = 95/185 (51.35%), Query Frame = 2
Query:  155 GLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGI--PRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSK----QFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGIK*ILIVDWDVHHGNSTQ 691
            G+++ E   KH       HPE   R+    ++L+  GI    R V+L   +A  +++L VHTE +V  ++  S K     FD+             +  G  + A LAAG  I  A+ V   E  +AFA++RPPGHHA+P    GFC  NN+A+   +LL +    G + I I+DWD HHG+ TQ
Sbjct:    4 GIVFHEEYLKHE--QSPTHPERRERLAYTMDQLREEGIFESERIVLLEPFKASLEDVLEVHTEEYVRFLEMESKKGGIIDFDTN------------IPVGVFDRALLAAGGAIRAAQAVLNKECENAFAMIRPPGHHAKPYIGAGFCYLNNMAIMVKWLLKQ----GFERIAILDWDAHHGDGTQ 170          
BLAST of FC921347 vs. ExPASy Swiss-Prot
Match: HDAH_ALCSD (Histone deacetylase-like amidohydrolase OS=Alcaligenes sp. (strain DSM 11172) GN=hdaH PE=1 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 5.071e-22
Identity = 58/163 (35.58%), Postives = 90/163 (55.21%), Query Frame = 2
Query:  206 YHPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRR-DRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGIK*ILIVDWDVHHGNSTQ 691
            +H  +P+  +     + A+G       + +  A D ++L  H+  H+  +K +S+        D I        +  G  E A L+AG  +E+  RVA GEL++ +A+V PPGHHA  + AMGFC++NN +VAA +    R  LG++ + I+DWDVHHGN TQ
Sbjct:   35 HHLAHPDTKRRFHELVCASGQIEHLTPIAAVAATDADILRAHSAAHLENMKRVSNLPTGGDTGDGITM------MGNGGLEIARLSAGGAVELTRRVATGELSAGYALVNPPGHHAPHNAAMGFCIFNNTSVAAGY---ARAVLGMERVAILDWDVHHGNGTQ 188          
BLAST of FC921347 vs. ExPASy Swiss-Prot
Match: HDA8_ARATH (Histone deacetylase 8 OS=Arabidopsis thaliana GN=HDA8 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.293e-17
Identity = 57/197 (28.93%), Postives = 93/197 (47.21%), Query Frame = 2
Query:  140 IKRRVGLLYDERMCKHNTPDGDY--------------HPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGIK*ILIVDWDVHHGNST 688
            +  RV + + E M +H+  +G +              HPEN +R++ + + L+   I           A    LL  HT  +   I+ +        R  IA+     +++ GS EAA LAAG+ +   + + +     A+A+VRPPGHH++P +A G+C  NN A+A    LN         + ++D DVH+GN T
Sbjct:    2 VTNRVDVFWHEGMLRHDAVEGVFDTGYDPGFLDVLEKHPENADRVRNMLSILRRGPIAPHVNWFTGLPAIVSELLMFHTSEY---IEKLVEADKSGERCEIAA---GTFMSPGSWEAALLAAGTTLSAMQHILDCHGKIAYALVRPPGHHSQPTQADGYCFLNNAALAVKLALNSG---SCSRVAVIDIDVHYGNGT 189          
BLAST of FC921347 vs. ExPASy Swiss-Prot
Match: Y535_METJA (Uncharacterized protein MJ0535 OS=Methanocaldococcus jannaschii GN=MJ0535 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.520e-15
Identity = 60/184 (32.61%), Postives = 95/184 (51.63%), Query Frame = 2
Query:  158 LLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDE------AMGFCLYNNVAVAASFLLNERPELGIK*ILIVDWDVHHGNSTQ 691
            +LY+  +  H      YH ENP R+  I N L++ G     +VL   ++    +L +H+ ++V  I N+S K F+             YL + + +AA L A  + + A ++A  + +  FA+ RPPGHHA          + GFC++NN+A AA    N      +K ++I+D+DVHHGN TQ
Sbjct:    8 ILYNPEVLGHKPKS--YHVENPERVLTILNSLKSNGFDD--IVLIEGKSTINEILEIHSRDYVYSIINLS-KSFNYYD-------GDTYLCDRTLDAA-LTAFKLAKEAVKLALKDRDLYFALTRPPGHHAGISGRALGAMSNGFCIFNNIAGAARLAKNY-----MKKVIIIDFDVHHGNGTQ 173          
BLAST of FC921347 vs. ExPASy Swiss-Prot
Match: HDA14_ARATH (Histone deacetylase 14 OS=Arabidopsis thaliana GN=HDA14 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.520e-15
Identity = 55/171 (32.16%), Postives = 87/171 (50.88%), Query Frame = 2
Query:  209 HPENPNRIKAIWNKLQAAGIPRR------CVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSA-----FAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGIK*ILIVDWDVHHGNST 688
            HPE   R+ AI N L+   +  +        + N K A  +++ +VH + +V  ++    +  DS    I       Y    + + + +AAG+ + + + V     NS      FA++RPPGHHA P   MGFC++ NVA+AA    + +   G+K I I+D+DVHHGN T
Sbjct:   80 HPECSARVPAIVNALEMNELTPKFRGSQILELANFKTATVEDIANVHDKAYVFGLEKAMDEASDSGLIFIEGS-GPTYATSTTFQDSLIAAGAGMALVDSVIAASRNSVDPPIGFALIRPPGHHAVPKGPMGFCVFGNVAIAAR---HAQRTHGLKRIFIIDFDVHHGNGT 246          
BLAST of FC921347 vs. ExPASy Swiss-Prot
Match: Y245_SYNY3 (Uncharacterized protein slr0245 OS=Synechocystis sp. (strain PCC 6803) GN=slr0245 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.597e-15
Identity = 58/185 (31.35%), Postives = 92/185 (49.73%), Query Frame = 2
Query:  152 VGLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAK-----DKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGIK*ILIVDWDVHHGNSTQ 691
            V ++Y     +H T  G  HPE P R+ AI   L+   +P    +   K +      D  +L  H++ ++N +  ++     S             ++  S + A LA  + ++  + V   +  + F + RPPGHHA  +  MGFCL NNVA+AA + L  RP  G++ + I+DWDVHHGN T+
Sbjct:    2 VAIIYSAEFLRHET--GPTHPECPARLTAIATALRK--MPGANYLHWQKPSPVTWNLDPYILRCHSQEYLNKLAKLAELGGGSLDADTP-------VSPQSYDVARLAVRAWLDGVDHVLN-QREAVFVLARPPGHHAIRNTGMGFCLLNNVAIAAHYALT-RP--GVERVAILDWDVHHGNGTE 171          
The following BLAST results are available for this feature:
BLAST of FC921347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
HDA6_CAEEL1.092e-2433.70Histone deacetylase 6 OS=Caenorhabditis elegans GN... [more]
HDA10_HUMAN1.426e-2433.94Histone deacetylase 10 OS=Homo sapiens GN=HDAC10 P... [more]
HDA10_MOUSE1.207e-2333.33Histone deacetylase 10 OS=Mus musculus GN=Hdac10 P... [more]
HDA10_RAT1.022e-2233.33Histone deacetylase 10 OS=Rattus norvegicus GN=Hda... [more]
Y130_ARCFU3.883e-2235.14Uncharacterized protein AF_0130 OS=Archaeoglobus f... [more]
HDAH_ALCSD5.071e-2235.58Histone deacetylase-like amidohydrolase OS=Alcalig... [more]
HDA8_ARATH1.293e-1728.93Histone deacetylase 8 OS=Arabidopsis thaliana GN=H... [more]
Y535_METJA3.520e-1532.61Uncharacterized protein MJ0535 OS=Methanocaldococc... [more]
HDA14_ARATH3.520e-1532.16Histone deacetylase 14 OS=Arabidopsis thaliana GN=... [more]
Y245_SYNY34.597e-1531.35Uncharacterized protein slr0245 OS=Synechocystis s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32103H08EF RVDevelopN Citrus clementina cDNA clone C32103H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921347 ID=FC921347; Name=FC921347; organism=Citrus clementina; type=EST; length=728bp
GAGATCGTCACTTTACTTGAGCGATCTCTCCTCTCTCTGCAGTATTCACG
TTGACGTATACATTCAAAAAATTAAGAATTACTAATTAGTGTGGCTGCCT
GCCTGCCAGTATGGAGGTGAAATCAGGTAGGGCAGGACCATAAAACGACG
CGTGGGCCTACTGTACGATGAGAGAATGTGTAAACATAACACACCTGACG
GTGATTATCACCCCGAGAACCCCAACCGCATCAAAGCTATTTGGAACAAG
CTCCAAGCCGCTGGCATTCCTCGACGGTGTGTCGTTTTAAATTCCAAAGA
AGCGAAAGACAAAAATCTACTGTCTGTGCACACGGAAAATCATGTTAATT
TGATTAAGAATATAAGCTCAAAGCAGTTTGATTCCCGAAGAGATAGGATT
GCGTCAAAATTAAATTCAATTTACTTAAATGAAGGATCATCGGAGGCTGC
TTATCTTGCTGCCGGTTCAGTTATAGAGGTCGCCGAGAGAGTTGCCGAAG
GGGAGTTGAATTCTGCTTTTGCTATTGTGAGACCTCCTGGTCATCATGCT
GAACCAGATGAAGCTATGGGATTTTGTCTATACAACAATGTGGCTGTTGC
TGCAAGTTTCCTATTAAATGAAAGACCAGAACTGGGAATCAAATAAATTT
TGATTGTTGATTGGGATGTTCACCATGGTAACAGTACTCAAAGATGTTCT
GGAANGATCCCGTGTCCTATCTTCTCTG
back to top