FC921347
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC921347 vs. ExPASy Swiss-Prot
Match: HDA6_CAEEL (Histone deacetylase 6 OS=Caenorhabditis elegans GN=hda-6 PE=2 SV=2) HSP 1 Score: 113.62 bits (283), Expect = 1.092e-24 Identity = 61/181 (33.70%), Postives = 99/181 (54.70%), Query Frame = 2 Query: 158 LLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPRRCVVLNSKE-AKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELN--SAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGIK*ILIVDWDVHHGNSTQ 691 + ++E H + D HPE P R + I L+ +G+ +CV N + A ++ + VHT+ + ++ + + + + + NSIYL + + A A G+V++ + + E + +A IVRPPGHHA ++ GFC++NNVAVAA + K +LI+DWDVHHGN TQ Sbjct: 429 IYFNEGDDAHFDLEEDNHPEKPARTRRILKTLRESGVLEKCVDRNCERIATNEEIRLVHTKKMLEHLRTTETMKDEELMEEAEKEFNSIYLTRDTLKVARKAVGAVLQSVDEIFEKDAGQRNALVIVRPPGHHASASKSSGFCIFNNVAVAAKYAQRRHK---AKRVLILDWDVHHGNGTQ 606 HSP 2 Score: 98.2117 bits (243), Expect = 4.746e-20 Identity = 63/178 (35.39%), Postives = 91/178 (51.12%), Query Frame = 2 Query: 164 YDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPRRCVVL-NSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGIK*ILIVDWDVHHGNSTQR 694 +++ +H HPE+ +RI I L I +C VL N E D +L H ++ V + S K+ + K +S+++ E S + A V ++ R+ E ++ FA+VRPPGHHA+ GFCL+NNVA AA E G + ILIVD DVHHG+ TQR Sbjct: 19 FNQTQNEHENTVCPTHPESSDRILKIKEALTKTKILEKCTVLTNFLEIDDADLEVTHDKSMVKDLME-SEKKTQEDINSQCEKYDSVFMTENSMKVAKDGVACVRDLTNRIMANEASNGFAVVRPPGHHADSVSPCGFCLFNNVAQAA----EEAFFSGAERILIVDLDVHHGHGTQR 191
BLAST of FC921347 vs. ExPASy Swiss-Prot
Match: HDA10_HUMAN (Histone deacetylase 10 OS=Homo sapiens GN=HDAC10 PE=1 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.426e-24 Identity = 56/165 (33.94%), Postives = 101/165 (61.21%), Query Frame = 2 Query: 197 DGDYHPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGIK*ILIVDWDVHHGNSTQ 691 D + E P R+ A ++L+ G+ +RC+ L+++EA ++ L VH+ +V+L++ + + ++ + ++IY + + A LAAG+ +++ + V G + + A+VRPPGHH + A GFC++NNVA+AA+ + + + G+ IL+VDWDVHHG Q Sbjct: 20 DPECEIERPERLTAALDRLRQRGLEQRCLRLSAREASEEELGLVHSPEYVSLVRETQVLGKEELQ-ALSGQFDAIYFHPSTFHCARLAAGAGLQLVDAVLTGAVQNGLALVRPPGHHGQRAAANGFCVFNNVAIAAA---HAKQKHGLHRILVVDWDVHHGQGIQ 180
BLAST of FC921347 vs. ExPASy Swiss-Prot
Match: HDA10_MOUSE (Histone deacetylase 10 OS=Mus musculus GN=Hdac10 PE=2 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.207e-23 Identity = 55/165 (33.33%), Postives = 99/165 (60.00%), Query Frame = 2 Query: 197 DGDYHPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGIK*ILIVDWDVHHGNSTQ 691 D + E P R+ A + L+ G+ RC+ L++ EA ++ L VH+ ++ L++ + + ++ + +++Y + + A LAAG+ +++ + V G +++ A+VRPPGHH++ A GFC++NNVA+AA + + + G++ ILIVDWDVHHG Q Sbjct: 20 DPECEIECPERLTAALDGLRQRGLEERCLCLSACEASEEELGLVHSPEYIALVQKTQTLDKEELH-ALSKQYDAVYFHPDTFHCARLAAGAALQLVDAVLTGAVHNGLALVRPPGHHSQRAAANGFCVFNNVALAAK---HAKQKYGLQRILIVDWDVHHGQGIQ 180
BLAST of FC921347 vs. ExPASy Swiss-Prot
Match: HDA10_RAT (Histone deacetylase 10 OS=Rattus norvegicus GN=Hdac10 PE=2 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.022e-22 Identity = 55/165 (33.33%), Postives = 96/165 (58.18%), Query Frame = 2 Query: 197 DGDYHPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGIK*ILIVDWDVHHGNSTQ 691 D + E P R+ A + L+ G+ RC L+ EA ++ L VH+ ++ L++ + + ++ + +++Y + + A LAAG+ + + + V G +++ A+VRPPGHH++ A GFC++NNVA+AA + + + G++ ILIVDWDVHHG Q Sbjct: 20 DPECEIECPERLTAALDGLRQRGLEERCQCLSVCEASEEELGLVHSPEYIALVQKTQTLDKEELHT-LSKQYDAVYFHPDTFHCARLAAGAALRLVDAVLTGAVHNGVALVRPPGHHSQRAAANGFCVFNNVAIAAR---HAKQKYGLQRILIVDWDVHHGQGIQ 180
BLAST of FC921347 vs. ExPASy Swiss-Prot
Match: Y130_ARCFU (Uncharacterized protein AF_0130 OS=Archaeoglobus fulgidus GN=AF_0130 PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 3.883e-22 Identity = 65/185 (35.14%), Postives = 95/185 (51.35%), Query Frame = 2 Query: 155 GLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGI--PRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSK----QFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGIK*ILIVDWDVHHGNSTQ 691 G+++ E KH HPE R+ ++L+ GI R V+L +A +++L VHTE +V ++ S K FD+ + G + A LAAG I A+ V E +AFA++RPPGHHA+P GFC NN+A+ +LL + G + I I+DWD HHG+ TQ Sbjct: 4 GIVFHEEYLKHE--QSPTHPERRERLAYTMDQLREEGIFESERIVLLEPFKASLEDVLEVHTEEYVRFLEMESKKGGIIDFDTN------------IPVGVFDRALLAAGGAIRAAQAVLNKECENAFAMIRPPGHHAKPYIGAGFCYLNNMAIMVKWLLKQ----GFERIAILDWDAHHGDGTQ 170
BLAST of FC921347 vs. ExPASy Swiss-Prot
Match: HDAH_ALCSD (Histone deacetylase-like amidohydrolase OS=Alcaligenes sp. (strain DSM 11172) GN=hdaH PE=1 SV=3) HSP 1 Score: 104.76 bits (260), Expect = 5.071e-22 Identity = 58/163 (35.58%), Postives = 90/163 (55.21%), Query Frame = 2 Query: 206 YHPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRR-DRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGIK*ILIVDWDVHHGNSTQ 691 +H +P+ + + A+G + + A D ++L H+ H+ +K +S+ D I + G E A L+AG +E+ RVA GEL++ +A+V PPGHHA + AMGFC++NN +VAA + R LG++ + I+DWDVHHGN TQ Sbjct: 35 HHLAHPDTKRRFHELVCASGQIEHLTPIAAVAATDADILRAHSAAHLENMKRVSNLPTGGDTGDGITM------MGNGGLEIARLSAGGAVELTRRVATGELSAGYALVNPPGHHAPHNAAMGFCIFNNTSVAAGY---ARAVLGMERVAILDWDVHHGNGTQ 188
BLAST of FC921347 vs. ExPASy Swiss-Prot
Match: HDA8_ARATH (Histone deacetylase 8 OS=Arabidopsis thaliana GN=HDA8 PE=2 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.293e-17 Identity = 57/197 (28.93%), Postives = 93/197 (47.21%), Query Frame = 2 Query: 140 IKRRVGLLYDERMCKHNTPDGDY--------------HPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGIK*ILIVDWDVHHGNST 688 + RV + + E M +H+ +G + HPEN +R++ + + L+ I A LL HT + I+ + R IA+ +++ GS EAA LAAG+ + + + + A+A+VRPPGHH++P +A G+C NN A+A LN + ++D DVH+GN T Sbjct: 2 VTNRVDVFWHEGMLRHDAVEGVFDTGYDPGFLDVLEKHPENADRVRNMLSILRRGPIAPHVNWFTGLPAIVSELLMFHTSEY---IEKLVEADKSGERCEIAA---GTFMSPGSWEAALLAAGTTLSAMQHILDCHGKIAYALVRPPGHHSQPTQADGYCFLNNAALAVKLALNSG---SCSRVAVIDIDVHYGNGT 189
BLAST of FC921347 vs. ExPASy Swiss-Prot
Match: Y535_METJA (Uncharacterized protein MJ0535 OS=Methanocaldococcus jannaschii GN=MJ0535 PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.520e-15 Identity = 60/184 (32.61%), Postives = 95/184 (51.63%), Query Frame = 2 Query: 158 LLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDE------AMGFCLYNNVAVAASFLLNERPELGIK*ILIVDWDVHHGNSTQ 691 +LY+ + H YH ENP R+ I N L++ G +VL ++ +L +H+ ++V I N+S K F+ YL + + +AA L A + + A ++A + + FA+ RPPGHHA + GFC++NN+A AA N +K ++I+D+DVHHGN TQ Sbjct: 8 ILYNPEVLGHKPKS--YHVENPERVLTILNSLKSNGFDD--IVLIEGKSTINEILEIHSRDYVYSIINLS-KSFNYYD-------GDTYLCDRTLDAA-LTAFKLAKEAVKLALKDRDLYFALTRPPGHHAGISGRALGAMSNGFCIFNNIAGAARLAKNY-----MKKVIIIDFDVHHGNGTQ 173
BLAST of FC921347 vs. ExPASy Swiss-Prot
Match: HDA14_ARATH (Histone deacetylase 14 OS=Arabidopsis thaliana GN=HDA14 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.520e-15 Identity = 55/171 (32.16%), Postives = 87/171 (50.88%), Query Frame = 2 Query: 209 HPENPNRIKAIWNKLQAAGIPRR------CVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSA-----FAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGIK*ILIVDWDVHHGNST 688 HPE R+ AI N L+ + + + N K A +++ +VH + +V ++ + DS I Y + + + +AAG+ + + + V NS FA++RPPGHHA P MGFC++ NVA+AA + + G+K I I+D+DVHHGN T Sbjct: 80 HPECSARVPAIVNALEMNELTPKFRGSQILELANFKTATVEDIANVHDKAYVFGLEKAMDEASDSGLIFIEGS-GPTYATSTTFQDSLIAAGAGMALVDSVIAASRNSVDPPIGFALIRPPGHHAVPKGPMGFCVFGNVAIAAR---HAQRTHGLKRIFIIDFDVHHGNGT 246
BLAST of FC921347 vs. ExPASy Swiss-Prot
Match: Y245_SYNY3 (Uncharacterized protein slr0245 OS=Synechocystis sp. (strain PCC 6803) GN=slr0245 PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.597e-15 Identity = 58/185 (31.35%), Postives = 92/185 (49.73%), Query Frame = 2 Query: 152 VGLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAK-----DKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGIK*ILIVDWDVHHGNSTQ 691 V ++Y +H T G HPE P R+ AI L+ +P + K + D +L H++ ++N + ++ S ++ S + A LA + ++ + V + + F + RPPGHHA + MGFCL NNVA+AA + L RP G++ + I+DWDVHHGN T+ Sbjct: 2 VAIIYSAEFLRHET--GPTHPECPARLTAIATALRK--MPGANYLHWQKPSPVTWNLDPYILRCHSQEYLNKLAKLAELGGGSLDADTP-------VSPQSYDVARLAVRAWLDGVDHVLN-QREAVFVLARPPGHHAIRNTGMGFCLLNNVAIAAHYALT-RP--GVERVAILDWDVHHGNGTE 171 The following BLAST results are available for this feature:
BLAST of FC921347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 37
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC921347 ID=FC921347; Name=FC921347; organism=Citrus clementina; type=EST; length=728bpback to top |