FC921353

Overview
NameFC921353
Unique NameFC921353
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_SYNP6 (Chorismate synthase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=aroC PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 4.651e-54
Identity = 103/176 (58.52%), Postives = 128/176 (72.73%), Query Frame = 2
Query:  167 GSTFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXETIGRVAPGAVAKKILKQFAGTEILAYVSQVHNVVLPEDVVDHXMLTLD 694
            GS+FG  FR++TFGESHGGGVG +IDGCPPR+ +SEA++Q +LDRRRPGQS+ITTPRKE D C+I SGV +G T  TPI + V N DQR  DYSEM VAYRPSHADATYD KY              ETIGRVA GA+AKK+L++ AG EI+ YV ++ ++   E  +D   +TL+
Sbjct:    2 GSSFGHLFRISTFGESHGGGVGVVIDGCPPRLEISEAEIQFELDRRRPGQSKITTPRKEADQCEILSGVVDGKTLDTPIAIVVRNKDQRSQDYSEMQVAYRPSHADATYDAKYGIRAVAGGGRSSARETIGRVAAGAIAKKLLREIAGVEIVGYVKRIKDL---EGQIDPETVTLE 174          
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_ACAM1 (Chorismate synthase OS=Acaryochloris marina (strain MBIC 11017) GN=aroC PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.353e-53
Identity = 104/175 (59.43%), Postives = 125/175 (71.43%), Query Frame = 2
Query:  167 GSTFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXETIGRVAPGAVAKKILKQFAGTEILAYVSQVHNVVLPEDVVDHXMLTL 691
            G+TFG  FR+TTFGESHGGGVG +IDGCPP+I ++  D+Q +LDRRRPGQSRITTPRKETDTC+I SG+ +G T GTPI + V N D R  DYSEM+  YRPSHADATYD KY              ETIGRVA GA+AKKIL+Q AG E++ YV ++  V   E  +D   +TL
Sbjct:    2 GNTFGHLFRITTFGESHGGGVGVVIDGCPPQIEIAAEDIQFELDRRRPGQSRITTPRKETDTCEIVSGMFQGKTLGTPITILVRNKDTRPQDYSEMAQVYRPSHADATYDAKYGIRNWQGGGRSSARETIGRVAAGAIAKKILQQAAGVEVIGYVKRIKTV---EADIDPDQVTL 173          
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_TRIEI (Chorismate synthase OS=Trichodesmium erythraeum (strain IMS101) GN=aroC PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.308e-53
Identity = 101/176 (57.39%), Postives = 129/176 (73.30%), Query Frame = 2
Query:  167 GSTFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXETIGRVAPGAVAKKILKQFAGTEILAYVSQVHNVVLPEDVVDHXMLTLD 694
            G+ FG  FRVTTFGESHGGGVG IIDGCPP++ ++  ++Q +LDRRRPGQS+ITTPRKE+DTC+I SGV EG T GTPI ++V N D R  DY +M++ YRPSHADATYD KY              ETIGRVA GA+AKKIL+Q++G EI+ YV ++ N+   E +VD   +T++
Sbjct:    2 GNIFGHLFRVTTFGESHGGGVGVIIDGCPPKLEINVKEIQYELDRRRPGQSKITTPRKESDTCEILSGVFEGQTLGTPIMIWVRNKDARPQDYQDMAIKYRPSHADATYDAKYGIRNWQGGGRSSARETIGRVASGAIAKKILQQYSGVEIVGYVKRIKNL---EAIVDPTTVTME 174          
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_SYNJA (Chorismate synthase OS=Synechococcus sp. (strain JA-3-3Ab) GN=aroC PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.308e-53
Identity = 101/163 (61.96%), Postives = 119/163 (73.01%), Query Frame = 2
Query:  161 AAGSTFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXETIGRVAPGAVAKKILKQFAGTEILAYVSQVHNV 649
            A G++FG  F VTT+GESHGG VG ++DGCPPR+PLSEAD+Q +LDRRRPGQS ITTPR+E D C+I SGV +G T GTPIH+ V N D R  DYSEM+  +RPSHADATY  KY              ETIGRVA GA+AKKIL+  AG EILAYV +V +V
Sbjct:    2 ANGNSFGVLFCVTTYGESHGGAVGVVVDGCPPRLPLSEADIQAELDRRRPGQSHITTPRQEADRCQILSGVFQGFTLGTPIHILVRNQDARPQDYSEMATTFRPSHADATYQAKYGIRNWQGGGRASARETIGRVAAGAIAKKILRLAAGVEILAYVQRVQDV 164          
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_CYAP7 (Chorismate synthase OS=Cyanothece sp. (strain PCC 7424) GN=aroC PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.308e-53
Identity = 102/176 (57.95%), Postives = 129/176 (73.30%), Query Frame = 2
Query:  167 GSTFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXETIGRVAPGAVAKKILKQFAGTEILAYVSQVHNVVLPEDVVDHXMLTLD 694
            G+ FG  FR+TTFGESHGGGVG +IDGCPPRI +SE ++Q++LDRRRPGQS+ITTPR+E+DTC+I SGV EG T GT I + V N D R  DY EM++ YRPSHADATYD KY              ETIGRVA GA+AKKIL+Q AG EI+AYV ++ ++   E +++   +TL+
Sbjct:    2 GNIFGHLFRITTFGESHGGGVGVVIDGCPPRIEISETEIQLELDRRRPGQSKITTPRQESDTCEIISGVFEGKTLGTSIAILVRNKDARSQDYDEMALKYRPSHADATYDAKYGIRNWKGGGRSSARETIGRVAAGAIAKKILQQVAGVEIVAYVKRIKDL---EAIINPETVTLE 174          
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_ANAVT (Chorismate synthase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=aroC PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.308e-53
Identity = 103/176 (58.52%), Postives = 125/176 (71.02%), Query Frame = 2
Query:  167 GSTFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXETIGRVAPGAVAKKILKQFAGTEILAYVSQVHNVVLPEDVVDHXMLTLD 694
            G+TFG  FR+TTFGESHGGGVG +IDGCPP + +S  ++Q++LDRRRPGQS+ITTPRKE DTC+I SGV EG T GTPI + V N D R  DY EM+  YRPSHADATYD KY              ETIGRVA GA+AKKIL+Q A  E++ YV ++ ++   E VVD   +TLD
Sbjct:    2 GNTFGHLFRITTFGESHGGGVGVVIDGCPPLLEISPEEIQLELDRRRPGQSKITTPRKEADTCEILSGVYEGKTLGTPISILVRNKDTRPQDYDEMAQKYRPSHADATYDAKYGIRNWQGGGRSSARETIGRVAAGAIAKKILRQVANVEVIGYVKRIKDL---EGVVDPNTVTLD 174          
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_ANASP (Chorismate synthase OS=Anabaena sp. (strain PCC 7120) GN=aroC PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.308e-53
Identity = 103/176 (58.52%), Postives = 125/176 (71.02%), Query Frame = 2
Query:  167 GSTFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXETIGRVAPGAVAKKILKQFAGTEILAYVSQVHNVVLPEDVVDHXMLTLD 694
            G+TFG  FR+TTFGESHGGGVG +IDGCPP + +S  ++Q++LDRRRPGQS+ITTPRKE DTC+I SGV EG T GTPI + V N D R  DY EM+  YRPSHADATYD KY              ETIGRVA GA+AKKIL+Q A  E++ YV ++ ++   E VVD   +TLD
Sbjct:    2 GNTFGHLFRITTFGESHGGGVGVVIDGCPPLLEISPEEIQLELDRRRPGQSKITTPRKEADTCEILSGVYEGKTLGTPISILVRNKDTRPQDYDEMAQKYRPSHADATYDAKYGIRNWQGGGRSSARETIGRVAAGAIAKKILRQVANVEVIGYVKRIKDL---EGVVDPNTVTLD 174          
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_NOSP7 (Chorismate synthase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=aroC PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 6.716e-53
Identity = 103/176 (58.52%), Postives = 126/176 (71.59%), Query Frame = 2
Query:  167 GSTFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXETIGRVAPGAVAKKILKQFAGTEILAYVSQVHNVVLPEDVVDHXMLTLD 694
            G+ FG  FR++TFGESHGGGVG +IDGCPP++ +S  ++QV+LDRRRPGQS+ITTPRKE DTC+I SGV EG T GTPI + V N D R  DY EM+  YRPSHADATYD KY              ETIGRVA GA+AKKIL+Q A  EI+AYV ++ ++   E VVD   +TL+
Sbjct:    2 GNIFGHLFRISTFGESHGGGVGVVIDGCPPQLEISAEEIQVELDRRRPGQSKITTPRKEADTCEIISGVFEGKTLGTPITILVRNQDTRPQDYDEMAQKYRPSHADATYDAKYGIRNWQGGGRSSARETIGRVAAGAIAKKILRQVANVEIIAYVKRIKDL---EGVVDPNTVTLE 174          
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_SYNJB (Chorismate synthase OS=Synechococcus sp. GN=aroC PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.496e-52
Identity = 100/163 (61.35%), Postives = 118/163 (72.39%), Query Frame = 2
Query:  161 AAGSTFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXETIGRVAPGAVAKKILKQFAGTEILAYVSQVHNV 649
            A G++FG  F VTT+GESHGG VG ++DGCPPR+PLSEAD+Q +LDRRRPGQS ITTPR+E D C+I SGV +G T GTPIH+ V N D R  DY EM+  +RPSHADATY  KY              ETIGRVA GA+AKKIL+  AG EILAYV +V +V
Sbjct:    2 ANGNSFGVLFCVTTYGESHGGAVGVVVDGCPPRLPLSEADIQAELDRRRPGQSPITTPRQEADRCQILSGVFQGFTLGTPIHILVRNQDARPQDYQEMATTFRPSHADATYQAKYGIRNWQGGGRASARETIGRVAAGAIAKKILRLAAGVEILAYVQRVKDV 164          
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_SYNP2 (Chorismate synthase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=aroC PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.954e-52
Identity = 98/158 (62.03%), Postives = 116/158 (73.42%), Query Frame = 2
Query:  167 GSTFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXETIGRVAPGAVAKKILKQFAGTEILAYVSQV 640
            G++FG  FR+TT+GESHGGGVG +IDGCPP + +SEA++Q +LDRRRPGQSRITTPR E D C+I SGV +G TTGTPI + V N DQR  DYSEM   YRPSHAD TYD KY              ETIGRVA GA+AKKIL+Q AG EI+ YV ++
Sbjct:    2 GNSFGHLFRITTYGESHGGGVGVVIDGCPPLVEISEAEIQAELDRRRPGQSRITTPRNEADRCEIMSGVFDGKTTGTPISILVRNKDQRSKDYSEMKEKYRPSHADFTYDAKYGIRNYEGGGRSSARETIGRVAAGAIAKKILQQVAGVEIIGYVKRI 159          
The following BLAST results are available for this feature:
BLAST of FC921353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
AROC_SYNP64.651e-5458.52Chorismate synthase OS=Synechococcus sp. (strain A... [more]
AROC_ACAM11.353e-5359.43Chorismate synthase OS=Acaryochloris marina (strai... [more]
AROC_TRIEI2.308e-5357.39Chorismate synthase OS=Trichodesmium erythraeum (s... [more]
AROC_SYNJA2.308e-5361.96Chorismate synthase OS=Synechococcus sp. (strain J... [more]
AROC_CYAP72.308e-5357.95Chorismate synthase OS=Cyanothece sp. (strain PCC ... [more]
AROC_ANAVT2.308e-5358.52Chorismate synthase OS=Anabaena variabilis (strain... [more]
AROC_ANASP2.308e-5358.52Chorismate synthase OS=Anabaena sp. (strain PCC 71... [more]
AROC_NOSP76.716e-5358.52Chorismate synthase OS=Nostoc punctiforme (strain ... [more]
AROC_SYNJB1.496e-5261.35Chorismate synthase OS=Synechococcus sp. GN=aroC P... [more]
AROC_SYNP21.954e-5262.03Chorismate synthase OS=Synechococcus sp. (strain A... [more]

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Properties
Property NameValue
Genbank descriptionC32104A02EF RVDevelopN Citrus clementina cDNA clone C32104A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921353 ID=FC921353; Name=FC921353; organism=Citrus clementina; type=EST; length=694bp
GATCTCAATGGCTTCTTCTGTTGCATCAAAAACGTTTCTTGCAGCTCCCA
GAACTGATGGGTCGTTGGGTTCCCTTCTGCCGGATCTTCGACGACAACTC
CCATCACCTAACGTCCAAATCTTGATCCGCTCTCGTACCCCAAAGAAGCT
CCAAGTAAAAGCAGCTGGGAGTACATTTGGAACATATTTTCGTGTCACAA
CATTTGGAGAGTCTCATGGAGGTGGTGTTGGTTGTATTATTGATGGTTGC
CCTCCCAGGATCCCTCTTTCAGAAGCTGATATGCAAGTTGACCTTGACAG
AAGGAGGCCAGGCCAGAGCCGAATTACAACCCCTAGAAAGGAGACTGATA
CATGCAAAATATATTCAGGAGTTTCTGAAGGGGTGACCACTGGAACACCC
ATCCATGTATTTGTACCTAATACTGATCAGAGAGGACATGATTACAGTGA
AATGTCAGTAGCTTACAGGCCATCTCATGCAGATGCGACTTATGACATGA
AGTATGGTGTGAGATCAGTACAGGGTGGTGGTAGATCTTCAGTTAGAGAA
ACCATTGGAAGAGTTGCACCAGGAGCTGTTGCAAAGAAAATTCTGAAGCA
ATTTGCAGGAACTGAGATTCTTGCTTATGTCTCTCAAGTGCACAATGTTG
TGCTTCCGGAGGACGTGGTTGATCATGANATGTTGACACTCGAT
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