FC921353

Overview
NameFC921353
Unique NameFC921353
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_MICAN (Chorismate synthase OS=Microcystis aeruginosa (strain NIES-843) GN=aroC PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.685e-51
Identity = 97/176 (55.11%), Postives = 124/176 (70.45%), Query Frame = 2
Query:  167 GSTFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXETIGRVAPGAVAKKILKQFAGTEILAYVSQVHNVVLPEDVVDHXMLTLD 694
            G+TFG  FRV+TFGESHGGGVG +IDGCPPR+ +S+ ++Q+DLDRR+PGQSRI TPR+E D C+I SGV +G T GTPI + V N D R  DY+EM+  +RPSHADATY+ KY              ETIGRVA GA+AKKILK     EI+ YV ++ ++   E ++D   +TLD
Sbjct:    2 GNTFGRLFRVSTFGESHGGGVGVVIDGCPPRLEISQEEIQIDLDRRKPGQSRIVTPRRENDICEIISGVFDGKTLGTPIAILVRNQDARSQDYNEMAEKFRPSHADATYEAKYGIRNWKGGGRSSARETIGRVAAGAIAKKILKSVYNVEIIGYVKRIKDL---EAIIDPNTVTLD 174          
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_SYNS3 (Chorismate synthase OS=Synechococcus sp. (strain CC9311) GN=aroC PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.813e-51
Identity = 96/161 (59.63%), Postives = 119/161 (73.91%), Query Frame = 2
Query:  167 GSTFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXETIGRVAPGAVAKKILKQFAGTEILAYVSQVHNV 649
            GS+FG  FR++TFGESHGGGVG I+DGCPPR+ L    +Q DLDRRRPGQSRITTPRKE D  +I SG+ +GVT GTPI + V N DQR  DY +M VA+RPSHADATY +KY              ETIGRVA GA+A+++LKQ  GTE++A+V Q+H++
Sbjct:    2 GSSFGKLFRISTFGESHGGGVGVIVDGCPPRLKLDLEAIQADLDRRRPGQSRITTPRKEADQVEILSGLLDGVTLGTPIAMVVRNKDQRPQDYKDMEVAFRPSHADATYQVKYGIQARSGGGRASARETIGRVAAGAIARQLLKQANGTEVIAWVKQIHDL 162          
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_SYNSC (Chorismate synthase OS=Synechococcus sp. (strain CC9605) GN=aroC PE=3 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 9.077e-50
Identity = 96/162 (59.26%), Postives = 120/162 (74.07%), Query Frame = 2
Query:  167 GSTFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTT-GTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXETIGRVAPGAVAKKILKQFAGTEILAYVSQVHNV 649
            GS+FG  FR++TFGESHGGGVG I++GCPPR+ LS   +Q +LDRR+PGQS ITTPRKE D  ++ SG+ +G TT GTPI + V N DQR  DY +M+VA+RPSHADATY  KY              ETIGRVA GA+AK++LKQ AGTEILA+V ++HN+
Sbjct:    2 GSSFGDLFRISTFGESHGGGVGVIVEGCPPRLNLSVESIQAELDRRKPGQSHITTPRKEADQVQVLSGLLDGETTLGTPIAMVVRNKDQRPGDYKDMAVAFRPSHADATYQAKYGIQARSGGGRASARETIGRVAAGAIAKQLLKQAAGTEILAWVKRIHNI 163          
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_SYNPX (Chorismate synthase OS=Synechococcus sp. (strain WH8102) GN=aroC PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.004e-48
Identity = 98/177 (55.37%), Postives = 125/177 (70.62%), Query Frame = 2
Query:  167 GSTFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTT-GTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXETIGRVAPGAVAKKILKQFAGTEILAYVSQVHNVVLPEDVVDHXMLTLD 694
            GS+FG  FR++TFGESHGGGVG I++GCPPR+ L    +Q +LDRRRPGQS ITTPRKE D  ++ SG+ +G TT GTPI + V N DQR  DY +M+VA+RPSHADATY +KY              ETIGRVA GA+AK++L + AGTE+LA+V ++H +   E  VD   +TLD
Sbjct:    2 GSSFGDLFRISTFGESHGGGVGVIVEGCPPRLDLDVDAIQAELDRRRPGQSHITTPRKEADQVEVLSGLLDGQTTLGTPIAMLVRNKDQRPGDYKDMAVAFRPSHADATYQVKYGVQARSGGGRASARETIGRVAAGAIAKQLLAKAAGTEVLAWVKRIHTI---EANVDPQAVTLD 175          
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_SYNR3 (Chorismate synthase OS=Synechococcus sp. (strain RCC307) GN=aroC PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.311e-48
Identity = 96/176 (54.55%), Postives = 123/176 (69.89%), Query Frame = 2
Query:  167 GSTFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXETIGRVAPGAVAKKILKQFAGTEILAYVSQVHNVVLPEDVVDHXMLTLD 694
            GS+FG  FR++TFGESHGGGVG I+DGCPPR+ +    +Q +LDRR+PGQS+ITTPRKE D  +  SG+ +GV+ GTPI + V N DQR  DY EM VA+RPSHADATY  KY              ETIGRVA GA+AK++L+Q  GTE+LA+V ++H +   E  +D  + TLD
Sbjct:    2 GSSFGHLFRISTFGESHGGGVGVIVDGCPPRLAIDIEAVQAELDRRKPGQSKITTPRKEDDRVEALSGLLDGVSLGTPIAMVVRNKDQRPGDYKEMQVAFRPSHADATYQSKYGIQARSGGGRASARETIGRVAAGAIAKQMLRQLHGTEVLAWVKRIHTL---EANIDPAVPTLD 174          
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_SYNS9 (Chorismate synthase OS=Synechococcus sp. (strain CC9902) GN=aroC PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.712e-48
Identity = 94/162 (58.02%), Postives = 120/162 (74.07%), Query Frame = 2
Query:  167 GSTFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTT-GTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXETIGRVAPGAVAKKILKQFAGTEILAYVSQVHNV 649
            GS+FG  FR++TFGESHGGGVG I++GCPPR+ L   ++Q +L+RR+PGQS ITTPRKE D  +I SG+ +G TT GTPI + V N DQR  DYS+M+VA+RPSHADATY  KY              ETIGRVA GA+AK++L++ AGTEILA+V Q+H +
Sbjct:    2 GSSFGDLFRISTFGESHGGGVGVIVEGCPPRLELDLDEIQAELNRRKPGQSHITTPRKEADQVEILSGLLDGKTTLGTPIAMLVRNKDQRPGDYSDMAVAFRPSHADATYQSKYGIQARSGGGRASARETIGRVAAGAIAKQLLRKAAGTEILAWVKQIHTI 163          
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_SYNPW (Chorismate synthase OS=Synechococcus sp. (strain WH7803) GN=aroC PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.236e-48
Identity = 90/161 (55.90%), Postives = 119/161 (73.91%), Query Frame = 2
Query:  167 GSTFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXETIGRVAPGAVAKKILKQFAGTEILAYVSQVHNV 649
            GS+FGT FR++TFGESHGGGVG I++GCPPR+ L    +Q +LDRRRPGQS+ITTPRKE D  +I SGV +G+T GTPI + V N DQR  DY E+ VA+RPSHADATY  KY              ETIGRVA GA+A+++L++  GT+++A+V ++H++
Sbjct:    2 GSSFGTLFRISTFGESHGGGVGVILEGCPPRLELDPLAIQAELDRRRPGQSKITTPRKEADQVEILSGVMDGLTLGTPIAMVVRNKDQRPQDYKEVEVAFRPSHADATYQAKYGIQARSGGGRASARETIGRVAAGAIARQMLQRSHGTDVVAWVKRIHDL 162          
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_NEIG1 (Chorismate synthase OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=aroC PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.602e-46
Identity = 95/159 (59.75%), Postives = 109/159 (68.55%), Query Frame = 2
Query:  164 AGSTFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXETIGRVAPGAVAKKILKQFAGTEILAYVSQV 640
            AG+TFG  F VTTFGESHG G+GCIIDGCPP + LSEAD+Q DLDRR+PG SR  T R+E D  +I SGV EG TTGTPI + + NTDQR  DY  ++ A+RP HAD TY  KY              ET  RVA GAVAKK LK+  GTEI AYV+QV
Sbjct:    2 AGNTFGQIFTVTTFGESHGAGLGCIIDGCPPGLELSEADIQFDLDRRKPGTSRHVTQRREADQVEILSGVFEGKTTGTPIALLIRNTDQRSKDYGNIATAFRPGHADYTYWHKYGTRDYRGGGRSSARETAARVAAGAVAKKWLKEKFGTEITAYVTQV 160          
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_NEIMB (Chorismate synthase OS=Neisseria meningitidis serogroup B GN=aroC PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.569e-46
Identity = 94/159 (59.12%), Postives = 109/159 (68.55%), Query Frame = 2
Query:  164 AGSTFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXETIGRVAPGAVAKKILKQFAGTEILAYVSQV 640
            AG+TFG  F VTTFGESHG G+GCIIDGCPP + LSEAD+Q DLDRR+PG SR  T R+E D  +I SGV EG TTGTPI + + NTDQR  DY  ++ ++RP HAD TY  KY              ET  RVA GAVAKK LK+  GTEI AYV+QV
Sbjct:    2 AGNTFGQLFTVTTFGESHGAGLGCIIDGCPPGLELSEADIQFDLDRRKPGTSRHVTQRREADQVEILSGVFEGKTTGTPIALLIRNTDQRSKDYGNIATSFRPGHADYTYWHKYGTRDYRGGGRSSARETAARVAAGAVAKKWLKEKFGTEITAYVTQV 160          
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_NEIMA (Chorismate synthase OS=Neisseria meningitidis serogroup A GN=aroC PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.569e-46
Identity = 94/159 (59.12%), Postives = 109/159 (68.55%), Query Frame = 2
Query:  164 AGSTFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXETIGRVAPGAVAKKILKQFAGTEILAYVSQV 640
            AG+TFG  F VTTFGESHG G+GCIIDGCPP + LSEAD+Q DLDRR+PG SR  T R+E D  +I SGV EG TTGTPI + + NTDQR  DY  ++ ++RP HAD TY  KY              ET  RVA GAVAKK LK+  GTEI AYV+QV
Sbjct:    2 AGNTFGQLFTVTTFGESHGAGLGCIIDGCPPGLELSEADIQFDLDRRKPGTSRHVTQRREADQVEILSGVFEGKTTGTPIALLIRNTDQRSKDYGNIATSFRPGHADYTYWHKYGTRDYRGGGRSSARETAARVAAGAVAKKWLKEKFGTEITAYVTQV 160          
The following BLAST results are available for this feature:
BLAST of FC921353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
AROC_MICAN3.685e-5155.11Chorismate synthase OS=Microcystis aeruginosa (str... [more]
AROC_SYNS34.813e-5159.63Chorismate synthase OS=Synechococcus sp. (strain C... [more]
AROC_SYNSC9.077e-5059.26Chorismate synthase OS=Synechococcus sp. (strain C... [more]
AROC_SYNPX1.004e-4855.37Chorismate synthase OS=Synechococcus sp. (strain W... [more]
AROC_SYNR31.311e-4854.55Chorismate synthase OS=Synechococcus sp. (strain R... [more]
AROC_SYNS91.712e-4858.02Chorismate synthase OS=Synechococcus sp. (strain C... [more]
AROC_SYNPW2.236e-4855.90Chorismate synthase OS=Synechococcus sp. (strain W... [more]
AROC_NEIG11.602e-4659.75Chorismate synthase OS=Neisseria gonorrhoeae (stra... [more]
AROC_NEIMB3.569e-4659.12Chorismate synthase OS=Neisseria meningitidis sero... [more]
AROC_NEIMA3.569e-4659.12Chorismate synthase OS=Neisseria meningitidis sero... [more]

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Properties
Property NameValue
Genbank descriptionC32104A02EF RVDevelopN Citrus clementina cDNA clone C32104A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921353 ID=FC921353; Name=FC921353; organism=Citrus clementina; type=EST; length=694bp
GATCTCAATGGCTTCTTCTGTTGCATCAAAAACGTTTCTTGCAGCTCCCA
GAACTGATGGGTCGTTGGGTTCCCTTCTGCCGGATCTTCGACGACAACTC
CCATCACCTAACGTCCAAATCTTGATCCGCTCTCGTACCCCAAAGAAGCT
CCAAGTAAAAGCAGCTGGGAGTACATTTGGAACATATTTTCGTGTCACAA
CATTTGGAGAGTCTCATGGAGGTGGTGTTGGTTGTATTATTGATGGTTGC
CCTCCCAGGATCCCTCTTTCAGAAGCTGATATGCAAGTTGACCTTGACAG
AAGGAGGCCAGGCCAGAGCCGAATTACAACCCCTAGAAAGGAGACTGATA
CATGCAAAATATATTCAGGAGTTTCTGAAGGGGTGACCACTGGAACACCC
ATCCATGTATTTGTACCTAATACTGATCAGAGAGGACATGATTACAGTGA
AATGTCAGTAGCTTACAGGCCATCTCATGCAGATGCGACTTATGACATGA
AGTATGGTGTGAGATCAGTACAGGGTGGTGGTAGATCTTCAGTTAGAGAA
ACCATTGGAAGAGTTGCACCAGGAGCTGTTGCAAAGAAAATTCTGAAGCA
ATTTGCAGGAACTGAGATTCTTGCTTATGTCTCTCAAGTGCACAATGTTG
TGCTTCCGGAGGACGTGGTTGATCATGANATGTTGACACTCGAT
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