FC921353

Overview
NameFC921353
Unique NameFC921353
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_THENV (Chorismate synthase OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=aroC PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.107e-22
Identity = 63/161 (39.13%), Postives = 86/161 (53.42%), Query Frame = 2
Query:  170 STFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXETIGR-VAPGAVAKKILKQFAGTEILAYVSQVHNV 649
            +TFG   R+TTFGESHG  +G +IDG P  + L+E D++ +L+RR      +  PR E +  +I SGV EG T GTPI V + N       Y E+ +  RP HAD  Y +KY               T    VA GAVAKK+L   AG E+  ++ ++  V
Sbjct:    2 NTFGRELRITTFGESHGKAIGVVIDGVPAGLELTEEDIKRELERRMFCHIPVLNPRCEPEEVEILSGVKEGYTQGTPIAVVIWNRRVISSYYEELWMKPRPGHADFAYYLKYGRHYDHRGGGRASGRTTAAVVAAGAVAKKML-ALAGAEVAGHIVELGGV 161          
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_DEHSC (Chorismate synthase OS=Dehalococcoides sp. (strain CBDB1) GN=aroC PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.594e-22
Identity = 54/161 (33.54%), Postives = 88/161 (54.66%), Query Frame = 2
Query:  170 STFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXE-TIGRVAPGAVAKKILKQFAGTEILAYVSQVHNV 649
            ++ G  F++T+FGESHG  VG +IDG P  + ++  ++Q+++D+R+ G    TTPR+E D  +I+SG+    TTG PI + + N +    +Y       RP HAD T  MKY                T G V  GA+A+K++    G E++ Y +++  +
Sbjct:    3 NSLGKLFQITSFGESHGDCVGVVIDGVPAGLAINVDEIQIEVDKRKSGAKAHTTPRREDDRIEIFSGIFNNFTTGAPICLVIWNKNIDSSEYERTRSKIRPGHADFTGFMKYGGFNDYRGGGRFSGRITAGHVMAGAIARKLISTI-GIEVIGYTAELGGI 162          
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_DEHSB (Chorismate synthase OS=Dehalococcoides sp. (strain BAV1) GN=aroC PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.594e-22
Identity = 54/161 (33.54%), Postives = 88/161 (54.66%), Query Frame = 2
Query:  170 STFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXE-TIGRVAPGAVAKKILKQFAGTEILAYVSQVHNV 649
            ++ G  F++T+FGESHG  VG +IDG P  + ++  ++Q+++D+R+ G    TTPR+E D  +I+SG+    TTG PI + + N +    +Y       RP HAD T  MKY                T G V  GA+A+K++    G E++ Y +++  +
Sbjct:    3 NSLGKLFQITSFGESHGDCVGVVIDGVPAGLAINVDEIQIEVDKRKSGAKAHTTPRREDDRIEIFSGIFNNFTTGAPICLVIWNKNIDSSEYERTRSKIRPGHADFTGFMKYGGFNDYRGGGRFSGRITAGHVMAGAIARKLISTI-GIEVIGYTAELGGI 162          
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_PYRKO (Chorismate synthase OS=Pyrococcus kodakaraensis GN=aroC PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.779e-21
Identity = 64/168 (38.10%), Postives = 90/168 (53.57%), Query Frame = 2
Query:  179 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXE-TIGRVAPGAVAKKILKQFAGTEILAYVSQVHNV---VLPEDVV 670
            G     + FGESHG  VG +++G PP I +S  +++ +L+RR+ G  R  T RKETD  KI SGV  G TTGTP+ V V N D     Y E+    RP HAD    +KY                T+G V  G  AKK+L++  G ++ AY+ ++  V   V PE+++
Sbjct:    3 GKLLSFSLFGESHGKAVGVLVEGLPPGIEVSVEELKRELERRK-GIERFATKRKETDEPKILSGVFRGRTTGTPVAVIVENRDVDSSYYEEIRNTPRPGHADYPAGIKYFGYNDYRGGGHFSGRLTVGVVIAGYFAKKLLER-EGIKVRAYLKRIGRVEAHVSPEELL 168          
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_THEGJ (Chorismate synthase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=aroC PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.972e-20
Identity = 61/162 (37.65%), Postives = 85/162 (52.47%), Query Frame = 2
Query:  179 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXE-TIGRVAPGAVAKKILKQFAGTEILAYVSQVHNVVLPE 661
            G     T FGESHG  VG +I+G PP I +   +M+ +L+RR+ G  R +T R+E+D   I SGV  G TTGTP+ V V N D     Y E+    RP HAD    +K+                T+G V  G  AKK+L++F G  + AY+ ++  V  P+
Sbjct:    3 GKLLSFTLFGESHGKAVGILIEGLPPGIEVKVEEMKAELERRK-GIRRFSTKRRESDEPVIVSGVFNGFTTGTPVTVLVWNRDADSSYYEEIRNTPRPGHADYPAKVKFFGYNDYRGGGHFSGRLTVGVVIAGYFAKKLLERF-GIRVRAYIRRIGPVECPQ 162          
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_DEHE1 (Chorismate synthase OS=Dehalococcoides ethenogenes (strain 195) GN=aroC PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.364e-20
Identity = 53/162 (32.72%), Postives = 86/162 (53.09%), Query Frame = 2
Query:  170 STFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXE-TIGRVAPGAVAKKILKQFAGTEILAYVSQVHNVV 652
            ++ G  F++T+FGESHG  VG +IDG P  + ++  ++QV++D+R+       TPR E D  +I+SG+    TTG PI + + N +    +Y       RP HAD T  +KY                T G V  GA+A+K++    G E++ Y +++  +V
Sbjct:    3 NSLGKLFQITSFGESHGDCVGVVIDGVPAGLAINVDEIQVEVDKRKSRAKAHATPRCEDDRIEIFSGILNNFTTGAPICLVIWNKNIDSSEYERTRSKIRPGHADFTGFVKYGGFNDFRGGGRFSGRITAGHVMAGAIARKLISTI-GIEVIGYTAELGGIV 163          
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_PYRAB (Chorismate synthase OS=Pyrococcus abyssi GN=aroC PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.858e-19
Identity = 60/158 (37.97%), Postives = 80/158 (50.63%), Query Frame = 2
Query:  179 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXE-TIGRVAPGAVAKKILKQFAGTEILAYVSQVHNV 649
            G     T FGESHG GVG +I G PP I +S  ++  +L+RR+ G   ++T R E D   I SG+  G TTGTPI V   N D     Y ++    RP HAD    +KY                T+G V  G  AKKIL+++ G  I AY+ ++  V
Sbjct:    3 GRVLSFTLFGESHGKGVGVVITGIPPGIKVSHEELVKELERRK-GIPGLSTARSEPDNPIILSGIFRGYTTGTPIAVLFENKDVDSSYYEDIKDKPRPGHADYPARIKYFGYNDYRGGGHFSGRLTVGIVTAGYFAKKILEKY-GIRIRAYIKRIGRV 158          
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_THEAC (Chorismate synthase OS=Thermoplasma acidophilum GN=aroC PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.666e-17
Identity = 55/160 (34.38%), Postives = 83/160 (51.88%), Query Frame = 2
Query:  173 TFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXE-TIGRVAPGAVAKKILKQFAGTEILAYVSQVHNV 649
            T G+  ++T FG SHG  VG IIDG P    +    +Q  ++ RRPG S +T+ RKE D  +I SG+ EG T G+P+ + + N +     YSE+    RP H+D T  +KY                T   VA G++AK  L+   G ++ +Y+  + +V
Sbjct:    3 TLGSSMKMTVFGSSHGEAVGSIIDGFPIGFKIPLDYVQKYMEYRRPGSSILTSQRKEDDEVEIISGLHEGYTDGSPLTLIIRNKNVISSYYSEIRENPRPGHSDYTMFLKYGEFRNYEGGGFLSGRMTAPLVAAGSIAKAYLEGM-GIKVKSYMRSIGDV 161          
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_UNCTG (Chorismate synthase OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=aroC PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.323e-16
Identity = 59/164 (35.98%), Postives = 86/164 (52.44%), Query Frame = 2
Query:  191 RVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDY--------SEMS--VAYRPSHADATYDMKY-XXXXXXXXXXXXXXETIGRVAPGAVAKKILKQFAGTEILAYVSQVHNV 649
            R TT GESHG G+  II+G P  + ++  D+ ++L RR+ G  R      ETDT K++SG+   V+ G+PI +++ N D +            SE++  +  RP HAD    MKY               ET  RVA GAV K +LK+F    I++Y SQ+ +V
Sbjct:    3 RFTTAGESHGEGLFVIIEGIPAGLTINSEDIDLELARRQKGYGRGQRMCIETDTVKVFSGMRHTVSLGSPIAMYIANKDFKNWTKIMSPTSVDSEVTPLLRPRPGHADLPGFMKYGVNDFRDILERASARETAARVAAGAVCKALLKEFE-ISIVSYTSQIGDV 165          
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_THEVO (Chorismate synthase OS=Thermoplasma volcanium GN=aroC PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.728e-16
Identity = 54/162 (33.33%), Postives = 78/162 (48.15%), Query Frame = 2
Query:  179 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXE-TIGRVAPGAVAKKILKQFAGTEILAYVSQVHNVVLPE 661
            G   +++ FG SHG  VG ++DG P    +    +Q  ++ RRPG + IT+ RKE D  KI SG+  G T G+PI + + N +     Y E+    RP H+D T  +KY                T   VA GA+AK  L    G +I +Y+  +  V   E
Sbjct:    7 GNVLKLSLFGSSHGESVGSLVDGFPVGYKIPLDYIQKYMEYRRPGNTIITSQRKEEDVVKIISGMHNGFTDGSPITMIIENKNVISSYYEELKENPRPGHSDYTLYVKYGDFRNYEGGGFLSGRMTAPLVAAGALAKSYLDSL-GIKITSYMKSIGEVTCDE 167          
The following BLAST results are available for this feature:
BLAST of FC921353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
AROC_THENV2.107e-2239.13Chorismate synthase OS=Thermoproteus neutrophilus ... [more]
AROC_DEHSC3.594e-2233.54Chorismate synthase OS=Dehalococcoides sp. (strain... [more]
AROC_DEHSB3.594e-2233.54Chorismate synthase OS=Dehalococcoides sp. (strain... [more]
AROC_PYRKO6.779e-2138.10Chorismate synthase OS=Pyrococcus kodakaraensis GN... [more]
AROC_THEGJ1.972e-2037.65Chorismate synthase OS=Thermococcus gammatolerans ... [more]
AROC_DEHE13.364e-2032.72Chorismate synthase OS=Dehalococcoides ethenogenes... [more]
AROC_PYRAB4.858e-1937.97Chorismate synthase OS=Pyrococcus abyssi GN=aroC P... [more]
AROC_THEAC2.666e-1734.38Chorismate synthase OS=Thermoplasma acidophilum GN... [more]
AROC_UNCTG1.323e-1635.98Chorismate synthase OS=Uncultured termite group 1 ... [more]
AROC_THEVO1.728e-1633.33Chorismate synthase OS=Thermoplasma volcanium GN=a... [more]

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Properties
Property NameValue
Genbank descriptionC32104A02EF RVDevelopN Citrus clementina cDNA clone C32104A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921353 ID=FC921353; Name=FC921353; organism=Citrus clementina; type=EST; length=694bp
GATCTCAATGGCTTCTTCTGTTGCATCAAAAACGTTTCTTGCAGCTCCCA
GAACTGATGGGTCGTTGGGTTCCCTTCTGCCGGATCTTCGACGACAACTC
CCATCACCTAACGTCCAAATCTTGATCCGCTCTCGTACCCCAAAGAAGCT
CCAAGTAAAAGCAGCTGGGAGTACATTTGGAACATATTTTCGTGTCACAA
CATTTGGAGAGTCTCATGGAGGTGGTGTTGGTTGTATTATTGATGGTTGC
CCTCCCAGGATCCCTCTTTCAGAAGCTGATATGCAAGTTGACCTTGACAG
AAGGAGGCCAGGCCAGAGCCGAATTACAACCCCTAGAAAGGAGACTGATA
CATGCAAAATATATTCAGGAGTTTCTGAAGGGGTGACCACTGGAACACCC
ATCCATGTATTTGTACCTAATACTGATCAGAGAGGACATGATTACAGTGA
AATGTCAGTAGCTTACAGGCCATCTCATGCAGATGCGACTTATGACATGA
AGTATGGTGTGAGATCAGTACAGGGTGGTGGTAGATCTTCAGTTAGAGAA
ACCATTGGAAGAGTTGCACCAGGAGCTGTTGCAAAGAAAATTCTGAAGCA
ATTTGCAGGAACTGAGATTCTTGCTTATGTCTCTCAAGTGCACAATGTTG
TGCTTCCGGAGGACGTGGTTGATCATGANATGTTGACACTCGAT
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