FC921353

Overview
NameFC921353
Unique NameFC921353
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_YERPY (Chorismate synthase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=aroC PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.699e-44
Identity = 88/162 (54.32%), Postives = 110/162 (67.90%), Query Frame = 2 
Query:  164 AGSTFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXETIGRVAPGAVAKKILKQFAGTEILAYVSQVHNV 649
            AG++ G +FRVTTFGESHG  +GCIIDG PP IP++EAD+Q+DLDRRRPG SR TT R+E D  +I SGV EGVTTGT I + + NTDQR  DYS +   +RP HAD TY+ KY              ET  RVA GA+AKK L Q  G ++  Y++Q+ +V
Sbjct:    2 AGNSIGQFFRVTTFGESHGIALGCIIDGVPPGIPITEADIQLDLDRRRPGTSRYTTQRRELDQVRILSGVFEGVTTGTSIGLMIENTDQRSQDYSAIKDVFRPGHADYTYEQKYGVRDYRGGGRSSARETAMRVAAGAIAKKYLAQKFGVQVRGYLAQMGDV 163
[Close]
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_YERPS (Chorismate synthase OS=Yersinia pseudotuberculosis GN=aroC PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.699e-44
Identity = 88/162 (54.32%), Postives = 110/162 (67.90%), Query Frame = 2 
Query:  164 AGSTFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXETIGRVAPGAVAKKILKQFAGTEILAYVSQVHNV 649
            AG++ G +FRVTTFGESHG  +GCIIDG PP IP++EAD+Q+DLDRRRPG SR TT R+E D  +I SGV EGVTTGT I + + NTDQR  DYS +   +RP HAD TY+ KY              ET  RVA GA+AKK L Q  G ++  Y++Q+ +V
Sbjct:    2 AGNSIGQFFRVTTFGESHGIALGCIIDGVPPGIPITEADIQLDLDRRRPGTSRYTTQRRELDQVRILSGVFEGVTTGTSIGLMIENTDQRSQDYSAIKDVFRPGHADYTYEQKYGVRDYRGGGRSSARETAMRVAAGAIAKKYLAQKFGVQVRGYLAQMGDV 163
[Close]
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_YERPP (Chorismate synthase OS=Yersinia pestis (strain Pestoides F) GN=aroC PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.699e-44
Identity = 88/162 (54.32%), Postives = 110/162 (67.90%), Query Frame = 2 
Query:  164 AGSTFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXETIGRVAPGAVAKKILKQFAGTEILAYVSQVHNV 649
            AG++ G +FRVTTFGESHG  +GCIIDG PP IP++EAD+Q+DLDRRRPG SR TT R+E D  +I SGV EGVTTGT I + + NTDQR  DYS +   +RP HAD TY+ KY              ET  RVA GA+AKK L Q  G ++  Y++Q+ +V
Sbjct:    2 AGNSIGQFFRVTTFGESHGIALGCIIDGVPPGIPITEADIQLDLDRRRPGTSRYTTQRRELDQVRILSGVFEGVTTGTSIGLMIENTDQRSQDYSAIKDVFRPGHADYTYEQKYGVRDYRGGGRSSARETAMRVAAGAIAKKYLAQKFGVQVRGYLAQMGDV 163
[Close]
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_YERPN (Chorismate synthase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=aroC PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.699e-44
Identity = 88/162 (54.32%), Postives = 110/162 (67.90%), Query Frame = 2 
Query:  164 AGSTFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXETIGRVAPGAVAKKILKQFAGTEILAYVSQVHNV 649
            AG++ G +FRVTTFGESHG  +GCIIDG PP IP++EAD+Q+DLDRRRPG SR TT R+E D  +I SGV EGVTTGT I + + NTDQR  DYS +   +RP HAD TY+ KY              ET  RVA GA+AKK L Q  G ++  Y++Q+ +V
Sbjct:    2 AGNSIGQFFRVTTFGESHGIALGCIIDGVPPGIPITEADIQLDLDRRRPGTSRYTTQRRELDQVRILSGVFEGVTTGTSIGLMIENTDQRSQDYSAIKDVFRPGHADYTYEQKYGVRDYRGGGRSSARETAMRVAAGAIAKKYLAQKFGVQVRGYLAQMGDV 163
[Close]
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_YERPG (Chorismate synthase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=aroC PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.699e-44
Identity = 88/162 (54.32%), Postives = 110/162 (67.90%), Query Frame = 2 
Query:  164 AGSTFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXETIGRVAPGAVAKKILKQFAGTEILAYVSQVHNV 649
            AG++ G +FRVTTFGESHG  +GCIIDG PP IP++EAD+Q+DLDRRRPG SR TT R+E D  +I SGV EGVTTGT I + + NTDQR  DYS +   +RP HAD TY+ KY              ET  RVA GA+AKK L Q  G ++  Y++Q+ +V
Sbjct:    2 AGNSIGQFFRVTTFGESHGIALGCIIDGVPPGIPITEADIQLDLDRRRPGTSRYTTQRRELDQVRILSGVFEGVTTGTSIGLMIENTDQRSQDYSAIKDVFRPGHADYTYEQKYGVRDYRGGGRSSARETAMRVAAGAIAKKYLAQKFGVQVRGYLAQMGDV 163
[Close]
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_YERPE (Chorismate synthase OS=Yersinia pestis GN=aroC PE=3 SV=3)

HSP 1 Score: 177.563 bits (449), Expect = 5.699e-44
Identity = 88/162 (54.32%), Postives = 110/162 (67.90%), Query Frame = 2 
Query:  164 AGSTFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXETIGRVAPGAVAKKILKQFAGTEILAYVSQVHNV 649
            AG++ G +FRVTTFGESHG  +GCIIDG PP IP++EAD+Q+DLDRRRPG SR TT R+E D  +I SGV EGVTTGT I + + NTDQR  DYS +   +RP HAD TY+ KY              ET  RVA GA+AKK L Q  G ++  Y++Q+ +V
Sbjct:    2 AGNSIGQFFRVTTFGESHGIALGCIIDGVPPGIPITEADIQLDLDRRRPGTSRYTTQRRELDQVRILSGVFEGVTTGTSIGLMIENTDQRSQDYSAIKDVFRPGHADYTYEQKYGVRDYRGGGRSSARETAMRVAAGAIAKKYLAQKFGVQVRGYLAQMGDV 163
[Close]
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_YERPB (Chorismate synthase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=aroC PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.699e-44
Identity = 88/162 (54.32%), Postives = 110/162 (67.90%), Query Frame = 2 
Query:  164 AGSTFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXETIGRVAPGAVAKKILKQFAGTEILAYVSQVHNV 649
            AG++ G +FRVTTFGESHG  +GCIIDG PP IP++EAD+Q+DLDRRRPG SR TT R+E D  +I SGV EGVTTGT I + + NTDQR  DYS +   +RP HAD TY+ KY              ET  RVA GA+AKK L Q  G ++  Y++Q+ +V
Sbjct:    2 AGNSIGQFFRVTTFGESHGIALGCIIDGVPPGIPITEADIQLDLDRRRPGTSRYTTQRRELDQVRILSGVFEGVTTGTSIGLMIENTDQRSQDYSAIKDVFRPGHADYTYEQKYGVRDYRGGGRSSARETAMRVAAGAIAKKYLAQKFGVQVRGYLAQMGDV 163
[Close]
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_YERPA (Chorismate synthase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=aroC PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.699e-44
Identity = 88/162 (54.32%), Postives = 110/162 (67.90%), Query Frame = 2 
Query:  164 AGSTFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXETIGRVAPGAVAKKILKQFAGTEILAYVSQVHNV 649
            AG++ G +FRVTTFGESHG  +GCIIDG PP IP++EAD+Q+DLDRRRPG SR TT R+E D  +I SGV EGVTTGT I + + NTDQR  DYS +   +RP HAD TY+ KY              ET  RVA GA+AKK L Q  G ++  Y++Q+ +V
Sbjct:    2 AGNSIGQFFRVTTFGESHGIALGCIIDGVPPGIPITEADIQLDLDRRRPGTSRYTTQRRELDQVRILSGVFEGVTTGTSIGLMIENTDQRSQDYSAIKDVFRPGHADYTYEQKYGVRDYRGGGRSSARETAMRVAAGAIAKKYLAQKFGVQVRGYLAQMGDV 163
[Close]
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_YERP3 (Chorismate synthase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=aroC PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.699e-44
Identity = 88/162 (54.32%), Postives = 110/162 (67.90%), Query Frame = 2 
Query:  164 AGSTFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXETIGRVAPGAVAKKILKQFAGTEILAYVSQVHNV 649
            AG++ G +FRVTTFGESHG  +GCIIDG PP IP++EAD+Q+DLDRRRPG SR TT R+E D  +I SGV EGVTTGT I + + NTDQR  DYS +   +RP HAD TY+ KY              ET  RVA GA+AKK L Q  G ++  Y++Q+ +V
Sbjct:    2 AGNSIGQFFRVTTFGESHGIALGCIIDGVPPGIPITEADIQLDLDRRRPGTSRYTTQRRELDQVRILSGVFEGVTTGTSIGLMIENTDQRSQDYSAIKDVFRPGHADYTYEQKYGVRDYRGGGRSSARETAMRVAAGAIAKKYLAQKFGVQVRGYLAQMGDV 163
[Close]
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_PROMT (Chorismate synthase OS=Prochlorococcus marinus (strain NATL2A) GN=aroC PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.699e-44
Identity = 88/161 (54.66%), Postives = 112/161 (69.57%), Query Frame = 2 
Query:  167 GSTFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXETIGRVAPGAVAKKILKQFAGTEILAYVSQVHNV 649
            GS+FG  F +++FGESHGGGVG IIDGCPPR+ L   ++Q DL+RRRPGQS+ITTPR E+D  +I SG+    T GTPI + V N D R  DYSE+   +RPSHADATY  KY              ETIGRVA G+VAK++L + A TEILA+V ++H++
Sbjct:    2 GSSFGKLFTISSFGESHGGGVGVIIDGCPPRLELDINEIQNDLNRRRPGQSKITTPRNESDEVEILSGLLGNKTLGTPIAMVVRNKDHRPKDYSEIKKTFRPSHADATYQKKYGIQASSGGGRASARETIGRVAAGSVAKQLLNKSAKTEILAWVKRIHDI 162
The following BLAST results are available for this feature:
BLAST of FC921353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
AROC_YERPY5.699e-4454.32Chorismate synthase OS=Yersinia pseudotuberculosis... [more]
AROC_YERPS5.699e-4454.32Chorismate synthase OS=Yersinia pseudotuberculosis... [more]
AROC_YERPP5.699e-4454.32Chorismate synthase OS=Yersinia pestis (strain Pes... [more]
AROC_YERPN5.699e-4454.32Chorismate synthase OS=Yersinia pestis bv. Antiqua... [more]
AROC_YERPG5.699e-4454.32Chorismate synthase OS=Yersinia pestis bv. Antiqua... [more]
AROC_YERPE5.699e-4454.32Chorismate synthase OS=Yersinia pestis GN=aroC PE=... [more]
AROC_YERPB5.699e-4454.32Chorismate synthase OS=Yersinia pseudotuberculosis... [more]
AROC_YERPA5.699e-4454.32Chorismate synthase OS=Yersinia pestis bv. Antiqua... [more]
AROC_YERP35.699e-4454.32Chorismate synthase OS=Yersinia pseudotuberculosis... [more]
AROC_PROMT5.699e-4454.66Chorismate synthase OS=Prochlorococcus marinus (st... [more]

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Properties
Property NameValue
Genbank descriptionC32104A02EF RVDevelopN Citrus clementina cDNA clone C32104A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921353 ID=FC921353; Name=FC921353; organism=Citrus clementina; type=EST; length=694bp
GATCTCAATGGCTTCTTCTGTTGCATCAAAAACGTTTCTTGCAGCTCCCA
GAACTGATGGGTCGTTGGGTTCCCTTCTGCCGGATCTTCGACGACAACTC
CCATCACCTAACGTCCAAATCTTGATCCGCTCTCGTACCCCAAAGAAGCT
CCAAGTAAAAGCAGCTGGGAGTACATTTGGAACATATTTTCGTGTCACAA
CATTTGGAGAGTCTCATGGAGGTGGTGTTGGTTGTATTATTGATGGTTGC
CCTCCCAGGATCCCTCTTTCAGAAGCTGATATGCAAGTTGACCTTGACAG
AAGGAGGCCAGGCCAGAGCCGAATTACAACCCCTAGAAAGGAGACTGATA
CATGCAAAATATATTCAGGAGTTTCTGAAGGGGTGACCACTGGAACACCC
ATCCATGTATTTGTACCTAATACTGATCAGAGAGGACATGATTACAGTGA
AATGTCAGTAGCTTACAGGCCATCTCATGCAGATGCGACTTATGACATGA
AGTATGGTGTGAGATCAGTACAGGGTGGTGGTAGATCTTCAGTTAGAGAA
ACCATTGGAAGAGTTGCACCAGGAGCTGTTGCAAAGAAAATTCTGAAGCA
ATTTGCAGGAACTGAGATTCTTGCTTATGTCTCTCAAGTGCACAATGTTG
TGCTTCCGGAGGACGTGGTTGATCATGANATGTTGACACTCGAT
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