FC921353

Overview
NameFC921353
Unique NameFC921353
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_ECOLI (Chorismate synthase OS=Escherichia coli (strain K12) GN=aroC PE=1 SV=4)

HSP 1 Score: 175.637 bits (444), Expect = 2.166e-43
Identity = 92/170 (54.12%), Postives = 111/170 (65.29%), Query Frame = 2 
Query:  164 AGSTFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXETIGRVAPGAVAKKILKQFAGTEILAYVSQVHNVVLPEDVVD 673
            AG+T G  FRVTTFGESHG  +GCI+DG PP IPL+EAD+Q DLDRRRPG SR TT R+E D  KI SGV EGVTTGT I + + NTDQR  DYS +   +RP HAD TY+ KY              ET  RVA GA+AKK L +  G EI   ++Q+ ++  P D+ D
Sbjct:    2 AGNTIGQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRREPDQVKILSGVFEGVTTGTSIGLLIENTDQRSQDYSAIKDVFRPGHADYTYEQKYGLRDYRGGGRSSARETAMRVAAGAIAKKYLAEKFGIEIRGCLTQMGDI--PLDIKD 169
[Close]
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_ECOHS (Chorismate synthase OS=Escherichia coli O9:H4 (strain HS) GN=aroC PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.166e-43
Identity = 92/170 (54.12%), Postives = 111/170 (65.29%), Query Frame = 2 
Query:  164 AGSTFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXETIGRVAPGAVAKKILKQFAGTEILAYVSQVHNVVLPEDVVD 673
            AG+T G  FRVTTFGESHG  +GCI+DG PP IPL+EAD+Q DLDRRRPG SR TT R+E D  KI SGV EGVTTGT I + + NTDQR  DYS +   +RP HAD TY+ KY              ET  RVA GA+AKK L +  G EI   ++Q+ ++  P D+ D
Sbjct:    2 AGNTIGQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRREPDQVKILSGVFEGVTTGTSIGLLIENTDQRSQDYSAIKDVFRPGHADYTYEQKYGLRDYRGGGRSSARETAMRVAAGAIAKKYLAEKFGIEIRGCLTQMGDI--PLDIKD 169
[Close]
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_ECODH (Chorismate synthase OS=Escherichia coli (strain K12 / DH10B) GN=aroC PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.166e-43
Identity = 92/170 (54.12%), Postives = 111/170 (65.29%), Query Frame = 2 
Query:  164 AGSTFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXETIGRVAPGAVAKKILKQFAGTEILAYVSQVHNVVLPEDVVD 673
            AG+T G  FRVTTFGESHG  +GCI+DG PP IPL+EAD+Q DLDRRRPG SR TT R+E D  KI SGV EGVTTGT I + + NTDQR  DYS +   +RP HAD TY+ KY              ET  RVA GA+AKK L +  G EI   ++Q+ ++  P D+ D
Sbjct:    2 AGNTIGQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRREPDQVKILSGVFEGVTTGTSIGLLIENTDQRSQDYSAIKDVFRPGHADYTYEQKYGLRDYRGGGRSSARETAMRVAAGAIAKKYLAEKFGIEIRGCLTQMGDI--PLDIKD 169
[Close]
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_ECOBW (Chorismate synthase OS=Escherichia coli (strain K12 / BW2952) GN=aroC PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.166e-43
Identity = 92/170 (54.12%), Postives = 111/170 (65.29%), Query Frame = 2 
Query:  164 AGSTFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXETIGRVAPGAVAKKILKQFAGTEILAYVSQVHNVVLPEDVVD 673
            AG+T G  FRVTTFGESHG  +GCI+DG PP IPL+EAD+Q DLDRRRPG SR TT R+E D  KI SGV EGVTTGT I + + NTDQR  DYS +   +RP HAD TY+ KY              ET  RVA GA+AKK L +  G EI   ++Q+ ++  P D+ D
Sbjct:    2 AGNTIGQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRREPDQVKILSGVFEGVTTGTSIGLLIENTDQRSQDYSAIKDVFRPGHADYTYEQKYGLRDYRGGGRSSARETAMRVAAGAIAKKYLAEKFGIEIRGCLTQMGDI--PLDIKD 169
[Close]
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_ACTPJ (Chorismate synthase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=aroC PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.166e-43
Identity = 89/171 (52.05%), Postives = 112/171 (65.50%), Query Frame = 2 
Query:  164 AGSTFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXETIGRVAPGAVAKKILKQFAGTEILAYVSQVHNV-VLPEDVVD 673
            AG++ G  F+VTTFGESHG  +GCI+DG PP + LSEAD+Q DLDRR+PG SR TTPR+E D  +I SGV EG TTGT I + + N DQR  DY +++  +RP HAD TY  KY              ET  RVA GA+AKK L++  G E+  Y+SQ+ NV + PE V D
Sbjct:    2 AGNSIGQLFKVTTFGESHGIALGCIVDGVPPNMALSEADIQPDLDRRKPGTSRYTTPRREDDEVQILSGVFEGKTTGTSIGLIIKNADQRSKDYGDIADKFRPGHADYTYQQKYGIRDYRGGGRSSARETAMRVAAGAIAKKYLREQFGIEVRGYLSQIGNVKINPETVAD 172
[Close]
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_ACTP7 (Chorismate synthase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=aroC PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.166e-43
Identity = 89/171 (52.05%), Postives = 112/171 (65.50%), Query Frame = 2 
Query:  164 AGSTFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXETIGRVAPGAVAKKILKQFAGTEILAYVSQVHNV-VLPEDVVD 673
            AG++ G  F+VTTFGESHG  +GCI+DG PP + LSEAD+Q DLDRR+PG SR TTPR+E D  +I SGV EG TTGT I + + N DQR  DY +++  +RP HAD TY  KY              ET  RVA GA+AKK L++  G E+  Y+SQ+ NV + PE V D
Sbjct:    2 AGNSIGQLFKVTTFGESHGIALGCIVDGVPPNMALSEADIQPDLDRRKPGTSRYTTPRREDDEVQILSGVFEGKTTGTSIGLIIKNADQRSKDYGDIADKFRPGHADYTYQQKYGIRDYRGGGRSSARETAMRVAAGAIAKKYLREQFGIEVRGYLSQIGNVKINPETVAD 172
[Close]
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_ACTP2 (Chorismate synthase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=aroC PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.166e-43
Identity = 89/171 (52.05%), Postives = 112/171 (65.50%), Query Frame = 2 
Query:  164 AGSTFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXETIGRVAPGAVAKKILKQFAGTEILAYVSQVHNV-VLPEDVVD 673
            AG++ G  F+VTTFGESHG  +GCI+DG PP + LSEAD+Q DLDRR+PG SR TTPR+E D  +I SGV EG TTGT I + + N DQR  DY +++  +RP HAD TY  KY              ET  RVA GA+AKK L++  G E+  Y+SQ+ NV + PE V D
Sbjct:    2 AGNSIGQLFKVTTFGESHGIALGCIVDGVPPNMALSEADIQPDLDRRKPGTSRYTTPRREDDEVQILSGVFEGKTTGTSIGLIIKNADQRSKDYGDIADKFRPGHADYTYQQKYGIRDYRGGGRSSARETAMRVAAGAIAKKYLREQFGIEVRGYLSQIGNVKINPETVAD 172
[Close]
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_SHIF8 (Chorismate synthase OS=Shigella flexneri serotype 5b (strain 8401) GN=aroC PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.828e-43
Identity = 90/164 (54.88%), Postives = 108/164 (65.85%), Query Frame = 2 
Query:  164 AGSTFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXETIGRVAPGAVAKKILKQFAGTEILAYVSQVHNVVL 655
            AG+T G  FRVTTFGESHG  +GCI+DG PP IPL+EAD+Q DLDRRRPG SR TT R+E D  KI SGV EGVTTGT I + + NTDQR  DYS +   +RP HAD TY+ KY              ET  RVA GA+AKK L +  G EI   ++Q+ ++ L
Sbjct:    2 AGNTIGQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRREPDQVKILSGVFEGVTTGTSIGLLIENTDQRSQDYSAIKDVFRPGHADYTYEQKYGLRDYRGGGRSSARETAMRVAAGAIAKKYLSEKFGIEIRGCLTQMGDIPL 165
[Close]
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_OPITP (Chorismate synthase OS=Opitutus terrae (strain DSM 11246 / PB90-1) GN=aroC PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.828e-43
Identity = 85/163 (52.15%), Postives = 110/163 (67.48%), Query Frame = 2 
Query:  170 STFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXETIGRVAPGAVAKKILKQFAGTEILAYVSQVHNVVLP 658
            ++FG  F VTT+GESHG  VG ++DGCPP +PLS  ++Q +LDRRRPGQS I TPRKE D  +I SG+ EG TTGTP+ + V N DQR   Y+EM   +RPSHAD TY  K+              ETIGRVA GA+A+KIL+   G EI A+V+Q+ ++ +P
Sbjct:    3 NSFGKLFTVTTWGESHGASVGVVVDGCPPNLPLSVEEIQTELDRRRPGQSDIVTPRKEEDRVEILSGLFEGKTTGTPLTMMVRNADQRPEAYAEMREKFRPSHADYTYQAKFGIRDHRGGGRSSARETIGRVAAGAIAQKILRLAGGIEIRAFVTQIQDICVP 165
[Close]
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_MARMS (Chorismate synthase OS=Marinomonas sp. (strain MWYL1) GN=aroC PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.828e-43
Identity = 89/164 (54.27%), Postives = 109/164 (66.46%), Query Frame = 2 
Query:  164 AGSTFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXETIGRVAPGAVAKKILKQFAGTEILAYVSQVHNVVL 655
            +G+TFGT F+VTTFGESHG  +G I+DGCPP I L EAD+Q DLD R+PG S+ TT R+E D  KI SGV EG TTGTPI + + NTDQR  DY  ++  +RP+HAD TYD KY              ET  RVA GA+AKK LKQ  G EI  ++SQ+  + L
Sbjct:    2 SGNTFGTLFKVTTFGESHGLALGAIVDGCPPGIELCEADLQRDLDLRKPGTSKHTTQRREADEVKIMSGVFEGKTTGTPIGLIIENTDQRSKDYGNIADTFRPAHADYTYDQKYGFRDYRGGGRSSARETAMRVAAGAIAKKYLKQQFGIEIQGFLSQLGPIKL 165
The following BLAST results are available for this feature:
BLAST of FC921353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
AROC_ECOLI2.166e-4354.12Chorismate synthase OS=Escherichia coli (strain K1... [more]
AROC_ECOHS2.166e-4354.12Chorismate synthase OS=Escherichia coli O9:H4 (str... [more]
AROC_ECODH2.166e-4354.12Chorismate synthase OS=Escherichia coli (strain K1... [more]
AROC_ECOBW2.166e-4354.12Chorismate synthase OS=Escherichia coli (strain K1... [more]
AROC_ACTPJ2.166e-4352.05Chorismate synthase OS=Actinobacillus pleuropneumo... [more]
AROC_ACTP72.166e-4352.05Chorismate synthase OS=Actinobacillus pleuropneumo... [more]
AROC_ACTP22.166e-4352.05Chorismate synthase OS=Actinobacillus pleuropneumo... [more]
AROC_SHIF82.828e-4354.88Chorismate synthase OS=Shigella flexneri serotype ... [more]
AROC_OPITP2.828e-4352.15Chorismate synthase OS=Opitutus terrae (strain DSM... [more]
AROC_MARMS2.828e-4354.27Chorismate synthase OS=Marinomonas sp. (strain MWY... [more]

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Properties
Property NameValue
Genbank descriptionC32104A02EF RVDevelopN Citrus clementina cDNA clone C32104A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921353 ID=FC921353; Name=FC921353; organism=Citrus clementina; type=EST; length=694bp
GATCTCAATGGCTTCTTCTGTTGCATCAAAAACGTTTCTTGCAGCTCCCA
GAACTGATGGGTCGTTGGGTTCCCTTCTGCCGGATCTTCGACGACAACTC
CCATCACCTAACGTCCAAATCTTGATCCGCTCTCGTACCCCAAAGAAGCT
CCAAGTAAAAGCAGCTGGGAGTACATTTGGAACATATTTTCGTGTCACAA
CATTTGGAGAGTCTCATGGAGGTGGTGTTGGTTGTATTATTGATGGTTGC
CCTCCCAGGATCCCTCTTTCAGAAGCTGATATGCAAGTTGACCTTGACAG
AAGGAGGCCAGGCCAGAGCCGAATTACAACCCCTAGAAAGGAGACTGATA
CATGCAAAATATATTCAGGAGTTTCTGAAGGGGTGACCACTGGAACACCC
ATCCATGTATTTGTACCTAATACTGATCAGAGAGGACATGATTACAGTGA
AATGTCAGTAGCTTACAGGCCATCTCATGCAGATGCGACTTATGACATGA
AGTATGGTGTGAGATCAGTACAGGGTGGTGGTAGATCTTCAGTTAGAGAA
ACCATTGGAAGAGTTGCACCAGGAGCTGTTGCAAAGAAAATTCTGAAGCA
ATTTGCAGGAACTGAGATTCTTGCTTATGTCTCTCAAGTGCACAATGTTG
TGCTTCCGGAGGACGTGGTTGATCATGANATGTTGACACTCGAT
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