FC921382

Overview
NameFC921382
Unique NameFC921382
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_RALSO (Phosphoenolpyruvate carboxylase OS=Ralstonia solanacearum GN=ppc PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.319e-27
Identity = 87/236 (36.86%), Postives = 117/236 (49.58%), Query Frame = 1
Query:    1 RLGDLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDM-GTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAEL----GSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGGG 690
            RL  L R +  FG  L  +DLRQ S  H   +  + R   + G Y+   E  K   L REL+  R L  P           LD FR A E+    GS  +  Y+IS     SD+L V LLQK+A +   G  G    G  + V+PLFET+ DLR A  ++ +LL++  +   ++      QEVM+GYSDS KD G  T+ WELYK +  +V      G++  LF       GRGGG
Sbjct:  444 RLASLARAIDVFGFHLASIDLRQVSDVHEATVAELLRVAGVEGAYAALSEADKRTLLLRELQQPRLLTLPFHTYSETTASELDIFRAAREVRARYGSRIVRNYIISHTETLSDLLEVMLLQKEAGMFRHGTNGSGGAGLDVMVIPLFETIEDLRNAPQIMGELLALPGF-DAVLAAQGNEQEVMLGYSDSNKDGGFLTSNWELYKTELALVELFERKGVRLRLFHGRGGTVGRGGG 678          
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_NOCFA (Phosphoenolpyruvate carboxylase OS=Nocardia farcinica GN=ppc PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.722e-27
Identity = 81/236 (34.32%), Postives = 120/236 (50.85%), Query Frame = 1
Query:    1 RLGDLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMG-TYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAEL----GSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGGG 690
            RL  L   V TFG  L  LD+RQ S  H + +  +  +  +   Y +  ED ++E L  EL+ +RPL+ P   +     + +   R A ++    G +++  Y+ISM ++ SD+L   LL K+  L   G      P  T+ +VPLFET+ DL      +   L +  YR+ ++      QEVM+GYSDS KD G   A W LY+A+ D+V    + GI+  LF       GRGGG
Sbjct:  396 RLAALRHAVETFGFHLQGLDMRQNSEVHEQVVAELLAWAGVHPAYGDLPEDARVELLAAELRTRRPLLGPHARLSEQAAKEVGIVRAAKQVVDTFGPEAVPNYIISMCTSVSDMLEAALLLKEGGLLDPGA-PEGSPSCTVNIVPLFETIEDLGAGAATLAAALEVPVYRE-LVAAAGMRQEVMLGYSDSNKDGGYLAANWALYRAELDLVEVARKTGIRLRLFHGRGGTVGRGGG 629          
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_RHOP2 (Phosphoenolpyruvate carboxylase OS=Rhodopseudomonas palustris (strain HaA2) GN=ppc PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.458e-26
Identity = 81/236 (34.32%), Postives = 117/236 (49.58%), Query Frame = 1
Query:    1 RLGDLIRRVVTFGMVLMKLDLRQESGRHAEAL-DAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAEL----GSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGGG 690
            RL  L R    FG  L  LD+RQ S  H   + + +        Y E  ED ++  LT EL+  RPL    ++   +    L     AA+     G+ ++   +ISM    SD+L V +L K+  L        P     + +VPLFET+ DL+ +  ++ +LL I  YR+ ++ +  G QEVM+GYSDS KD G  T+ WELYKA+  ++      GI+  LF       GRGGG
Sbjct:  411 RLRQLRRAADCFGFHLASLDMRQNSAVHERTIAELMNAAHPASAYLEIGEDARIALLTAELRSARPLTSIFVKYSDETVGELAVLHEAAQAHATYGAAAIPQCIISMTKGVSDLLEVAVLLKEVGLI------DPSGRSAINIVPLFETIEDLQASSAIMDRLLGIPEYRR-LVDSRGGVQEVMLGYSDSNKDGGFVTSGWELYKAEIGLIEIFEHHGIRLRLFHGRGGSVGRGGG 639          
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_RHOPS (Phosphoenolpyruvate carboxylase OS=Rhodopseudomonas palustris (strain BisB5) GN=ppc PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.487e-26
Identity = 83/238 (34.87%), Postives = 119/238 (50.00%), Query Frame = 1
Query:    1 RLGDLIRRVVTFGMVLMKLDLRQESGRHAEAL-DAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAEL----GSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGG--TLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGGG 690
            RL  L R    FG  L  LD+RQ S  H   + + +       +Y   DED+++  LT EL+  RPL    I+   +    L     AA      G  ++   +ISM    SD+L V +L K        E+G   P G   + +VPLFET+ DL+    ++ +LL+I  YR+ ++ +  G QEVM+GYSDS KD G  T+ WELYKA+  ++      G++  LF       GRGGG
Sbjct:  411 RLRQLRRAADCFGFHLASLDMRQNSAVHERTMGELMDAARPTSSYLALDEDERIALLTGELRSARPLTSIFIKYSDETVGELAVLHEAARAHSIYGEAAIPQCIISMTKGVSDLLEVAVLLK--------EVGLIDPSGRCAINIVPLFETIEDLQACAAIMDRLLAIPEYRR-LVDSRGGVQEVMLGYSDSNKDGGFVTSGWELYKAEIGLLDVFEHHGVRLRLFHGRGGSVGRGGG 639          
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_BURPS (Phosphoenolpyruvate carboxylase OS=Burkholderia pseudomallei GN=ppc PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.248e-26
Identity = 89/239 (37.24%), Postives = 119/239 (49.79%), Query Frame = 1
Query:    1 RLGDLIRRVVTFGMVLMKLDLRQESGRH-AEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFR----VAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGT--LRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGH-QEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGGG 690
            RL  L+R    FG  L  +DLRQ S  H A   + + R      Y+   E  KL  L   L   RPL  P ++     K  L        + A+ G+ ++  Y+IS     SD++ V LLQK+  L   G LG P       L V+PLFET+ DLR A  ++R   ++    + +   H GH QEVM+GYSDS KD G  T+ WELY+A+  +V   +E GIK  LF       GRGGG
Sbjct:  455 RLAPLMRAAEVFGFHLASIDLRQSSDIHEAVVAELLARGGVEADYAALPEADKLRVLLAALADPRPLRSPYLDYSDLAKSELGVLERAHAIRAQFGARAVRNYIISHTETVSDLVEVLLLQKETGL-FEGTLGTPHANARNGLMVIPLFETIADLRNASDIMRAFFALPGVGELLA--HQGHEQEVMLGYSDSNKDGGFLTSNWELYRAELALVDLFDERGIKLRLFHGRGGTVGRGGG 690          
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_BURP6 (Phosphoenolpyruvate carboxylase OS=Burkholderia pseudomallei (strain 668) GN=ppc PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.248e-26
Identity = 89/239 (37.24%), Postives = 119/239 (49.79%), Query Frame = 1
Query:    1 RLGDLIRRVVTFGMVLMKLDLRQESGRH-AEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFR----VAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGT--LRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGH-QEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGGG 690
            RL  L+R    FG  L  +DLRQ S  H A   + + R      Y+   E  KL  L   L   RPL  P ++     K  L        + A+ G+ ++  Y+IS     SD++ V LLQK+  L   G LG P       L V+PLFET+ DLR A  ++R   ++    + +   H GH QEVM+GYSDS KD G  T+ WELY+A+  +V   +E GIK  LF       GRGGG
Sbjct:  455 RLAPLMRAAEVFGFHLASIDLRQSSDIHEAVVAELLARGGVEADYAALPEADKLRVLLAALADPRPLRSPYLDYSDLAKSELGVLERAHAIRAQFGARAVRNYIISHTETVSDLVEVLLLQKETGL-FEGTLGTPHANARNGLMVIPLFETIADLRNASDIMRAFFALPGVGELLA--HQGHEQEVMLGYSDSNKDGGFLTSNWELYRAELALVDLFDERGIKLRLFHGRGGTVGRGGG 690          
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_BURMS (Phosphoenolpyruvate carboxylase OS=Burkholderia mallei (strain SAVP1) GN=ppc PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.248e-26
Identity = 89/239 (37.24%), Postives = 119/239 (49.79%), Query Frame = 1
Query:    1 RLGDLIRRVVTFGMVLMKLDLRQESGRH-AEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFR----VAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGT--LRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGH-QEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGGG 690
            RL  L+R    FG  L  +DLRQ S  H A   + + R      Y+   E  KL  L   L   RPL  P ++     K  L        + A+ G+ ++  Y+IS     SD++ V LLQK+  L   G LG P       L V+PLFET+ DLR A  ++R   ++    + +   H GH QEVM+GYSDS KD G  T+ WELY+A+  +V   +E GIK  LF       GRGGG
Sbjct:  455 RLAPLMRAAEVFGFHLASIDLRQSSDIHEAVVAELLARGGVEADYAALPEADKLRVLLAALADPRPLRSPYLDYSDLAKSELGVLERAHAIRAQFGARAVRNYIISHTETVSDLVEVLLLQKETGL-FEGTLGTPHANARNGLMVIPLFETIADLRNASDIMRAFFALPGVGELLA--HQGHEQEVMLGYSDSNKDGGFLTSNWELYRAELALVDLFDERGIKLRLFHGRGGTVGRGGG 690          
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_BURMA (Phosphoenolpyruvate carboxylase OS=Burkholderia mallei GN=ppc PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.248e-26
Identity = 89/239 (37.24%), Postives = 119/239 (49.79%), Query Frame = 1
Query:    1 RLGDLIRRVVTFGMVLMKLDLRQESGRH-AEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFR----VAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGT--LRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGH-QEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGGG 690
            RL  L+R    FG  L  +DLRQ S  H A   + + R      Y+   E  KL  L   L   RPL  P ++     K  L        + A+ G+ ++  Y+IS     SD++ V LLQK+  L   G LG P       L V+PLFET+ DLR A  ++R   ++    + +   H GH QEVM+GYSDS KD G  T+ WELY+A+  +V   +E GIK  LF       GRGGG
Sbjct:  455 RLAPLMRAAEVFGFHLASIDLRQSSDIHEAVVAELLARGGVEADYAALPEADKLRVLLAALADPRPLRSPYLDYSDLAKSELGVLERAHAIRAQFGARAVRNYIISHTETVSDLVEVLLLQKETGL-FEGTLGTPHANARNGLMVIPLFETIADLRNASDIMRAFFALPGVGELLA--HQGHEQEVMLGYSDSNKDGGFLTSNWELYRAELALVDLFDERGIKLRLFHGRGGTVGRGGG 690          
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_BURM9 (Phosphoenolpyruvate carboxylase OS=Burkholderia mallei (strain NCTC 10229) GN=ppc PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.248e-26
Identity = 89/239 (37.24%), Postives = 119/239 (49.79%), Query Frame = 1
Query:    1 RLGDLIRRVVTFGMVLMKLDLRQESGRH-AEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFR----VAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGT--LRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGH-QEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGGG 690
            RL  L+R    FG  L  +DLRQ S  H A   + + R      Y+   E  KL  L   L   RPL  P ++     K  L        + A+ G+ ++  Y+IS     SD++ V LLQK+  L   G LG P       L V+PLFET+ DLR A  ++R   ++    + +   H GH QEVM+GYSDS KD G  T+ WELY+A+  +V   +E GIK  LF       GRGGG
Sbjct:  455 RLAPLMRAAEVFGFHLASIDLRQSSDIHEAVVAELLARGGVEADYAALPEADKLRVLLAALADPRPLRSPYLDYSDLAKSELGVLERAHAIRAQFGARAVRNYIISHTETVSDLVEVLLLQKETGL-FEGTLGTPHANARNGLMVIPLFETIADLRNASDIMRAFFALPGVGELLA--HQGHEQEVMLGYSDSNKDGGFLTSNWELYRAELALVDLFDERGIKLRLFHGRGGTVGRGGG 690          
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_BURM7 (Phosphoenolpyruvate carboxylase OS=Burkholderia mallei (strain NCTC 10247) GN=ppc PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.248e-26
Identity = 89/239 (37.24%), Postives = 119/239 (49.79%), Query Frame = 1
Query:    1 RLGDLIRRVVTFGMVLMKLDLRQESGRH-AEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFR----VAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGT--LRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGH-QEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGGG 690
            RL  L+R    FG  L  +DLRQ S  H A   + + R      Y+   E  KL  L   L   RPL  P ++     K  L        + A+ G+ ++  Y+IS     SD++ V LLQK+  L   G LG P       L V+PLFET+ DLR A  ++R   ++    + +   H GH QEVM+GYSDS KD G  T+ WELY+A+  +V   +E GIK  LF       GRGGG
Sbjct:  455 RLAPLMRAAEVFGFHLASIDLRQSSDIHEAVVAELLARGGVEADYAALPEADKLRVLLAALADPRPLRSPYLDYSDLAKSELGVLERAHAIRAQFGARAVRNYIISHTETVSDLVEVLLLQKETGL-FEGTLGTPHANARNGLMVIPLFETIADLRNASDIMRAFFALPGVGELLA--HQGHEQEVMLGYSDSNKDGGFLTSNWELYRAELALVDLFDERGIKLRLFHGRGGTVGRGGG 690          
The following BLAST results are available for this feature:
BLAST of FC921382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
CAPP_RALSO1.319e-2736.86Phosphoenolpyruvate carboxylase OS=Ralstonia solan... [more]
CAPP_NOCFA1.722e-2734.32Phosphoenolpyruvate carboxylase OS=Nocardia farcin... [more]
CAPP_RHOP21.458e-2634.32Phosphoenolpyruvate carboxylase OS=Rhodopseudomona... [more]
CAPP_RHOPS2.487e-2634.87Phosphoenolpyruvate carboxylase OS=Rhodopseudomona... [more]
CAPP_BURPS3.248e-2637.24Phosphoenolpyruvate carboxylase OS=Burkholderia ps... [more]
CAPP_BURP63.248e-2637.24Phosphoenolpyruvate carboxylase OS=Burkholderia ps... [more]
CAPP_BURMS3.248e-2637.24Phosphoenolpyruvate carboxylase OS=Burkholderia ma... [more]
CAPP_BURMA3.248e-2637.24Phosphoenolpyruvate carboxylase OS=Burkholderia ma... [more]
CAPP_BURM93.248e-2637.24Phosphoenolpyruvate carboxylase OS=Burkholderia ma... [more]
CAPP_BURM73.248e-2637.24Phosphoenolpyruvate carboxylase OS=Burkholderia ma... [more]

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Properties
Property NameValue
Genbank descriptionC32104C12EF RVDevelopN Citrus clementina cDNA clone C32104C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921382 ID=FC921382; Name=FC921382; organism=Citrus clementina; type=EST; length=705bp
CGGCTCGGTGATCTTATTAGGAGAGTTGTCACCTTTGGAATGGTGTTGAT
GAAGCTTGACTTGCGTCAGGAATCTGGTAGACATGCTGAAGCGCTAGATG
CAATTACGAGATATTTGGATATGGGTACATACAGTGAGTGGGACGAAGAC
AAAAAACTGGAATTTCTAACGAGGGAGTTGAAAGGAAAGCGGCCTTTAGT
TCCGCCTACTATTGAGGTTCCTTCTGATGTTAAAGAAGTCTTGGATACCT
TCCGTGTTGCTGCTGAGCTAGGGAGTGATTCACTTGGGGCATACGTCATT
TCTATGGCTTCTAATGCAAGTGATGTCCTTGCCGTAGAGCTTTTGCAGAA
AGACGCCCGACTTGCTGTTAGTGGTGAGTTAGGGAGACCATGTCCTGGTG
GAACGCTACGTGTGGTTCCTCTGTTTGAGACTGTGACGGACTTGAGAGGA
GCTGGTTTGGTGATCAGGAAATTGTTATCAATTGACTGGTATAGAAAGCA
CATTATAAAAAACCATAACGGGCATCAAGAGGTGATGGTTGGATATTCTG
ATTCTGGTAAAGATGCTGGACGCTTCACTGCTGCATGGGAACTATACAAA
GCCCAAGAGGATGTTGTGGCTGCCTGCAATGAGTTTGGTATTAAGTGACT
CTTCTCATGGGCGAAGAGGGAGTATGGCCGTGGTGGTGGCCTACATATCT
TGCAT
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