FC921382

Overview
NameFC921382
Unique NameFC921382
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP3_ARATH (Phosphoenolpyruvate carboxylase 3 OS=Arabidopsis thaliana GN=PPC3 PE=2 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 1.597e-57
Identity = 117/229 (51.09%), Postives = 156/229 (68.12%), Query Frame = 1
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGT-YSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGGG 690
            D +R+V TFG+ L++LD+RQES RH + LDAIT++LD+G+ Y +W E+ + E+L  EL GKRPL  P +    ++ +VLDTF+V +EL SD  GAY+ISMA++ SDVLAVELLQ++  +              LRVVPLFE + DL  A   + +L SIDWY+  I    NG QEVM+GYSDSGKDAGR +AAWELYKAQE++V    ++G+K  +F       GRGGG
Sbjct:  434 DFLRQVSTFGLSLVRLDIRQESERHTDVLDAITKHLDIGSSYRDWSEEGRQEWLLAELSGKRPLFGPDLPKTEEISDVLDTFKVISELPSDCFGAYIISMATSPSDVLAVELLQRECHVK-----------NPLRVVPLFEKLADLEAAPAAVARLFSIDWYKNRI----NGKQEVMIGYSDSGKDAGRLSAAWELYKAQEELVKVAKKYGVKLTMFHGRGGTVGRGGG 647          
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_PICAB (Phosphoenolpyruvate carboxylase OS=Picea abies GN=PPC PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 6.069e-57
Identity = 117/228 (51.32%), Postives = 155/228 (67.98%), Query Frame = 1
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGGG 690
            D +R+V TFG+  +KLD+RQES RH++  DAITR+L +G+Y EW E+++  +L  EL+GKRPL  P +    +V++VLDTF V +EL +D+ GAY+ISMA+ ASDVL VELLQ++  +       +P     LRVVPLFE + DL  A   + +L SI+WYR  I    +G QEVM+GYSDSGKDAGR +A W LYKAQED++    EFGIK  +F       GRGGG
Sbjct:  432 DFMRQVSTFGLSFVKLDIRQESDRHSDVADAITRHLGIGSYKEWSEEQRQAWLLSELQGKRPLFGPDLPKTDEVRDVLDTFHVISELPADNFGAYIISMATAASDVLVVELLQRECHVK------KP-----LRVVPLFEKLADLEAAPAALARLFSINWYRNRI----DGKQEVMIGYSDSGKDAGRLSAGWALYKAQEDLIKVAKEFGIKLTMFHGRGGTVGRGGG 644          
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_AMAHP (Phosphoenolpyruvate carboxylase OS=Amaranthus hypochondriacus PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.934e-56
Identity = 116/228 (50.88%), Postives = 154/228 (67.54%), Query Frame = 1
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGGG 690
            D +R+V TFG+ L+KLD+RQES RH E +DAIT +L +G+Y  W E+K+ E+L  EL+GKRPL    + +  +V + + TFRV AEL +DS GAY+ISMA+  SDVLAVELLQ++  +       +P     LRVVPLFE + DL+ A   + +L SIDWY+  I    NG QEVM+GYSDSGKDAGR +AAW+LYK QE ++    E+G+K  +F       GRGGG
Sbjct:  432 DFMRQVSTFGLSLVKLDIRQESDRHTEVMDAITTHLGIGSYRSWSEEKRQEWLLSELRGKRPLFGSDLPMSYEVADAIGTFRVLAELPNDSFGAYIISMATAPSDVLAVELLQRECGIK------KP-----LRVVPLFEKLADLQSAAASMTRLFSIDWYKNRI----NGTQEVMIGYSDSGKDAGRLSAAWQLYKVQEQLIQVAKEYGVKLTMFHGRGGTVGRGGG 644          
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP3_SORBI (Phosphoenolpyruvate carboxylase 3 OS=Sorghum bicolor PE=1 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 5.138e-56
Identity = 115/228 (50.44%), Postives = 151/228 (66.23%), Query Frame = 1
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGGG 690
            DL+R+V TFG+ L+KLD+RQES R  + +DAIT +L +G+Y  W EDK++E+L  ELKGKRPL+PP + +  ++ +V+   RV AEL  DS G Y+ISM +  SDVLAVELLQ++  +             TL VVPLFE + DL+ A   + KL S DWY  HI    NG Q+VMVGYSDSGKDAGR +AAW+LY AQE++     ++G+K  LF       GRGGG
Sbjct:  429 DLLRQVFTFGLSLVKLDIRQESERQTDVIDAITTHLGIGSYRSWPEDKRMEWLVSELKGKRPLLPPDLPMTEEIADVIGAMRVLAELPIDSFGPYIISMCTAPSDVLAVELLQRECGIR-----------QTLPVVPLFERLADLQAAPASVEKLFSTDWYINHI----NGKQQVMVGYSDSGKDAGRLSAAWQLYVAQEEMAKVAKKYGVKLTLFHGRGGTVGRGGG 641          
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP1_MESCR (Phosphoenolpyruvate carboxylase 1 OS=Mesembryanthemum crystallinum GN=PPCA PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.138e-56
Identity = 114/228 (50.00%), Postives = 156/228 (68.42%), Query Frame = 1
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGGG 690
            D +R+V TFG+ L+KLD+RQES RH + +DAIT +L +G+Y +W E+K+ ++L  EL+GKRPL  P +    ++ +VLDT  V AEL SDS GAYVISMA+  SDVLAVELLQ++ ++       +P     LRVVPLFE + DL  A   + +L S+DWY+  I    +G QEVM+GYSDSGKDAGR +AAW++YK QE+++    +FG+K  +F       GRGGG
Sbjct:  433 DFMRQVATFGLCLVKLDIRQESERHTDVMDAITTHLGIGSYRDWTEEKRQDWLLSELRGKRPLFGPDLPRTDEIADVLDTINVIAELPSDSFGAYVISMATAPSDVLAVELLQRECKVK------KP-----LRVVPLFEKLADLEAAPASMTRLFSVDWYKNRI----DGKQEVMIGYSDSGKDAGRLSAAWQMYKVQEELLKVSKKFGVKLTMFHGRGGTVGRGGG 645          
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP1_MAIZE (Phosphoenolpyruvate carboxylase 1 OS=Zea mays GN=PEP1 PE=1 SV=2)

HSP 1 Score: 216.083 bits (549), Expect = 1.495e-55
Identity = 114/228 (50.00%), Postives = 152/228 (66.67%), Query Frame = 1
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGGG 690
            DL+R+V TFG+ L+KLD+RQES RH + +DAIT +L +G+Y EW EDK+ E+L  EL+GKRPL+PP +    ++ +V+  F V AEL  DS G Y+ISMA+  SDVLAVELLQ++  +       +P P     VVPLFE + DL+ A   + +L S+DWY   I     G Q+VMVGYSDSGKDAGR +AAW+LY+AQE++      +G+K  LF       GRGGG
Sbjct:  438 DLLRQVFTFGLSLVKLDIRQESERHTDVIDAITTHLGIGSYREWPEDKRQEWLLSELRGKRPLLPPDLPQTDEIADVIGAFHVLAELPPDSFGPYIISMATAPSDVLAVELLQRECGVR------QPLP-----VVPLFERLADLQSAPASVERLFSVDWYMDRI----KGKQQVMVGYSDSGKDAGRLSAAWQLYRAQEEMAQVAKRYGVKLTLFHGRGGTVGRGGG 650          
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP1_SORBI (Phosphoenolpyruvate carboxylase 1 OS=Sorghum bicolor GN=PEPC PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 9.689e-55
Identity = 111/228 (48.68%), Postives = 149/228 (65.35%), Query Frame = 1
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGGG 690
            D +R+V  FG+ L+KLD+RQES RH + LD+IT +L +G+Y+EW E+K+ ++L  EL+GKRPL    +    +  +VL TF V AEL +D  GAY+ISMA+  SDVLAVELLQ++  +              LRVVPLFE + DL  A   + +L SIDWY   I    NG QEVM+GYSDSGKDAGR +AAW++YKAQE+++     +G+K  +F       GRGGG
Sbjct:  428 DFLRQVFNFGLALVKLDIRQESDRHTDVLDSITTHLGIGSYAEWSEEKRQDWLLSELRGKRPLFGSDLPQTEETADVLGTFHVLAELPADCFGAYIISMATAPSDVLAVELLQRECHVK-----------QPLRVVPLFEKLADLEAAPAAVARLFSIDWYMNRI----NGKQEVMIGYSDSGKDAGRLSAAWQMYKAQEELIKVAKHYGVKLTMFHGRGGTVGRGGG 640          
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_SHEON (Phosphoenolpyruvate carboxylase OS=Shewanella oneidensis GN=ppc PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.003e-51
Identity = 113/228 (49.56%), Postives = 147/228 (64.47%), Query Frame = 1
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGGG 690
            D++RR+  FG+ +++LD+RQ++GRH + L  +TRYL MG ++ WDE +K  FL REL  +RPL+P   +  +DV EVL+T R+ A+  + +LG+YVISMAS  SDVL V LL K        E G   P   +RVVPLFET++DL  A   I  LL IDWYR +      G QEVM+GYSDS KDAG   AAW  Y+AQE +VA CN+ G+K  LF       GRGGG
Sbjct:  377 DILRRLACFGIHMLRLDIRQDAGRHCDVLAELTRYLGMGDFNHWDETEKQAFLLRELSNRRPLIPSNWQPSADVAEVLNTCRLIAKHPAKALGSYVISMASKPSDVLTVLLLLK--------ETGCTHP---MRVVPLFETLSDLNNAAACITDLLDIDWYRGYT----KGMQEVMIGYSDSAKDAGVMAAAWAQYRAQEQLVAVCNQAGVKLTLFHGRGGSIGRGGG 589          
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_PSE14 (Phosphoenolpyruvate carboxylase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=ppc PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.917e-51
Identity = 116/228 (50.88%), Postives = 146/228 (64.04%), Query Frame = 1
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGGG 690
            D +RR VTFG+ L++LD+RQ+S RH  A+  IT YL +G Y EWDE  +++FL REL  +RPL+P   +  +D  EVL T RV A   + SLG+YVISMA +ASDVLAV+LL K+A L       RP     +RVVPLFET+ DL  AG VI KLL +  YR  +    +G QEVM+GYSDS KDAG   AAW  Y+AQE +V  C E  ++  LF       GRGGG
Sbjct:  377 DCLRRAVTFGLFLVRLDVRQDSSRHCAAMTEITDYLGLGRYEEWDEQTRIDFLLRELNNRRPLLPGYFKPAADTAEVLATCRVVAAAPTASLGSYVISMAGSASDVLAVQLLLKEAGLQ------RP-----MRVVPLFETLADLDNAGPVIEKLLGLPGYRSRL----HGPQEVMIGYSDSAKDAGTTAAAWAQYRAQEKLVEICREQQVELLLFHGRGGTVGRGGG 589          
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_PSEMY (Phosphoenolpyruvate carboxylase OS=Pseudomonas mendocina (strain ymp) GN=ppc PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.213e-50
Identity = 115/228 (50.44%), Postives = 146/228 (64.04%), Query Frame = 1
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGGG 690
            D +RR  TFG+ L++LD+RQ+S RHA AL  IT YL +G Y+EWDE+++L FL REL  +RPL+P      +D  EVL T R  A   + +LG+YVISMA  ASDVLAV+LL K+A L       RP     +RVVPLFET+ DL  AG VI +LL +  YR  +    +G QEVM+GYSDS KDAG   AAW  Y+AQE++V  C E  ++  LF       GRGGG
Sbjct:  377 DCLRRAATFGLFLVRLDVRQDSTRHAAALSEITDYLGLGRYAEWDEEQRLAFLQRELDSRRPLLPSDYRPSADTAEVLATCREVAAAPAAALGSYVISMAGAASDVLAVQLLLKEAGLR------RP-----MRVVPLFETLADLDNAGPVIDRLLGLPGYRVRL----HGPQEVMIGYSDSAKDAGTTAAAWAQYRAQEELVRLCGEHQVELLLFHGRGGTVGRGGG 589          
The following BLAST results are available for this feature:
BLAST of FC921382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
CAPP3_ARATH1.597e-5751.09Phosphoenolpyruvate carboxylase 3 OS=Arabidopsis t... [more]
CAPP_PICAB6.069e-5751.32Phosphoenolpyruvate carboxylase OS=Picea abies GN=... [more]
CAPP_AMAHP3.934e-5650.88Phosphoenolpyruvate carboxylase OS=Amaranthus hypo... [more]
CAPP3_SORBI5.138e-5650.44Phosphoenolpyruvate carboxylase 3 OS=Sorghum bicol... [more]
CAPP1_MESCR5.138e-5650.00Phosphoenolpyruvate carboxylase 1 OS=Mesembryanthe... [more]
CAPP1_MAIZE1.495e-5550.00Phosphoenolpyruvate carboxylase 1 OS=Zea mays GN=P... [more]
CAPP1_SORBI9.689e-5548.68Phosphoenolpyruvate carboxylase 1 OS=Sorghum bicol... [more]
CAPP_SHEON1.003e-5149.56Phosphoenolpyruvate carboxylase OS=Shewanella onei... [more]
CAPP_PSE142.917e-5150.88Phosphoenolpyruvate carboxylase OS=Pseudomonas syr... [more]
CAPP_PSEMY4.213e-5050.44Phosphoenolpyruvate carboxylase OS=Pseudomonas men... [more]

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Properties
Property NameValue
Genbank descriptionC32104C12EF RVDevelopN Citrus clementina cDNA clone C32104C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921382 ID=FC921382; Name=FC921382; organism=Citrus clementina; type=EST; length=705bp
CGGCTCGGTGATCTTATTAGGAGAGTTGTCACCTTTGGAATGGTGTTGAT
GAAGCTTGACTTGCGTCAGGAATCTGGTAGACATGCTGAAGCGCTAGATG
CAATTACGAGATATTTGGATATGGGTACATACAGTGAGTGGGACGAAGAC
AAAAAACTGGAATTTCTAACGAGGGAGTTGAAAGGAAAGCGGCCTTTAGT
TCCGCCTACTATTGAGGTTCCTTCTGATGTTAAAGAAGTCTTGGATACCT
TCCGTGTTGCTGCTGAGCTAGGGAGTGATTCACTTGGGGCATACGTCATT
TCTATGGCTTCTAATGCAAGTGATGTCCTTGCCGTAGAGCTTTTGCAGAA
AGACGCCCGACTTGCTGTTAGTGGTGAGTTAGGGAGACCATGTCCTGGTG
GAACGCTACGTGTGGTTCCTCTGTTTGAGACTGTGACGGACTTGAGAGGA
GCTGGTTTGGTGATCAGGAAATTGTTATCAATTGACTGGTATAGAAAGCA
CATTATAAAAAACCATAACGGGCATCAAGAGGTGATGGTTGGATATTCTG
ATTCTGGTAAAGATGCTGGACGCTTCACTGCTGCATGGGAACTATACAAA
GCCCAAGAGGATGTTGTGGCTGCCTGCAATGAGTTTGGTATTAAGTGACT
CTTCTCATGGGCGAAGAGGGAGTATGGCCGTGGTGGTGGCCTACATATCT
TGCAT
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