FC921382

Overview
NameFC921382
Unique NameFC921382
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_PSEE4 (Phosphoenolpyruvate carboxylase OS=Pseudomonas entomophila (strain L48) GN=ppc PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.213e-50
Identity = 112/228 (49.12%), Postives = 149/228 (65.35%), Query Frame = 1
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGGG 690
            D +RR VTFG+ L++LD+RQ++ RH +AL  IT YL +G Y++WDE++++EFL  ELK +RPL+P   +  ++  EVL T R  A   + SLG+YVISMA  ASDVLAV+LL K+A L       RP     +RVVPLFET+ DL  AG V+ +LL +  YR  +    +G QEVM+GYSDS KDAG   AAW  Y+AQE++V  C E  ++  LF       GRGGG
Sbjct:  374 DSLRRAVTFGLFLVRLDVRQDAARHRDALSEITDYLGLGRYADWDEERRIEFLQHELKNRRPLLPAHFKPAAETAEVLATCREIAAAPAASLGSYVISMAGAASDVLAVQLLLKEAGLT------RP-----MRVVPLFETLADLDNAGPVMERLLGLPGYRAGL----HGPQEVMIGYSDSAKDAGTTAAAWAQYRAQENLVRICREHQVELLLFHGRGGTVGRGGG 586          
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_PSEU5 (Phosphoenolpyruvate carboxylase OS=Pseudomonas stutzeri (strain A1501) GN=ppc PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.226e-49
Identity = 113/228 (49.56%), Postives = 145/228 (63.60%), Query Frame = 1
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGGG 690
            D +RR+  FG+ L++LD+RQ++ RHA AL  IT YL +G Y +WDE K+L++L  EL  +RPL+P      +D  EVL T  V AE  + SLG+YVISMA  ASDVLAV+LL K+A L       RP     +RVVPLFET+ DL  A   I +LLS+  YR+ +    +G QEVM+GYSDS KDAG   AAW  Y+AQE +V  C E G++  LF       GRGGG
Sbjct:  378 DCLRRLAVFGLFLVRLDIRQDAARHAAALAEITDYLGLGDYQQWDEQKRLDWLQHELANRRPLLPAHYHPSADTAEVLATCAVIAEAPAASLGSYVISMAHAASDVLAVQLLLKEAGLQ------RP-----MRVVPLFETLDDLNNAAPTIDRLLSLPGYRQRL----HGPQEVMIGYSDSAKDAGTTAAAWAQYRAQEQLVEVCREHGVELLLFHGRGGTVGRGGG 590          
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_MARMS (Phosphoenolpyruvate carboxylase OS=Marinomonas sp. (strain MWYL1) GN=ppc PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.226e-49
Identity = 109/228 (47.81%), Postives = 143/228 (62.72%), Query Frame = 1
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGGG 690
            DLIR   TFG  L++LD+RQ++ RH +AL AITR+  +G Y+EWDE  +  FL  EL  KRPL+P      ++VKEVLDTF + ++   +S G+YVISMAS  SDVLAV L+ K++ +           G  +R+VPLFET+ DL  A  +I +L SI WY+ +I    NG QEVM+GYSDS KDAG+  A W  Y+AQE +   C + GI   LF       GRGGG
Sbjct:  376 DLIRCAATFGATLVRLDVRQDASRHIDALSAITRFYGLGDYAEWDEASRQAFLLTELNSKRPLLPMEWTPTAEVKEVLDTFAMISQGQQNSFGSYVISMASAPSDVLAVALMLKESGV-----------GFPMRIVPLFETLADLDNAEPIIEQLFSIPWYKSYI----NGRQEVMIGYSDSAKDAGQIAATWGQYRAQEALTRLCKKHGIHLTLFHGRGGTVGRGGG 588          
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_PSEU2 (Phosphoenolpyruvate carboxylase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=ppc PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.601e-49
Identity = 113/228 (49.56%), Postives = 144/228 (63.16%), Query Frame = 1
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGGG 690
            D +RR VTFG+ L++LD+RQ+S RH  A+  IT YL +G Y EWDE  +++FL REL  +RPL+P   +  +D  EVL T R  A   + SLG+YVISMA +ASDVLAV+LL K++ L       RP     +RVVPLFET+ DL  AG VI  LL +  YR  +    +G QEVM+GYSDS KDAG   AAW  Y+AQE +V  C E  ++  LF       GRGGG
Sbjct:  377 DCLRRAVTFGLFLVRLDVRQDSSRHCAAMTEITDYLGLGRYEEWDEQTRIDFLLRELNNRRPLLPSYFKPAADTAEVLATCREVAAAPAASLGSYVISMAGSASDVLAVQLLLKESGLQ------RP-----MRVVPLFETLADLDNAGPVIETLLGLPGYRSRL----HGPQEVMIGYSDSAKDAGTTAAAWAQYRAQERLVEICREQQVELLLFHGRGGTVGRGGG 589          
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_PSEPF (Phosphoenolpyruvate carboxylase OS=Pseudomonas fluorescens (strain Pf0-1) GN=ppc PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.601e-49
Identity = 115/228 (50.44%), Postives = 147/228 (64.47%), Query Frame = 1
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGGG 690
            D +RR VTFG+ L++LD+RQ+S RH+ A+  IT YL +G Y EWDE++++ FLTREL+ +RPL+P   +  +D  EVL T +  A     SLG+YVISMA  ASDVLAV+LL K+     SG L RP     +RVVPLFET+ DL  AG VI +LL +  YR  +     G QEVM+GYSDS KDAG   AAW  Y+AQE +V  C E  ++  LF       GRGGG
Sbjct:  375 DCLRRAVTFGLFLVRLDVRQDSSRHSAAMTEITDYLGLGKYEEWDEEQRISFLTRELQNRRPLLPAHFKPSADTAEVLATCKEIAAAPGASLGSYVISMAGAASDVLAVQLLLKE-----SGVL-RP-----MRVVPLFETLADLDNAGPVIERLLLLPGYRARL----QGPQEVMIGYSDSAKDAGTTAAAWAQYRAQERLVEICREQQVELLLFHGRGGTVGRGGG 587          
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_PHOPR (Phosphoenolpyruvate carboxylase OS=Photobacterium profundum GN=ppc PE=3 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 1.601e-49
Identity = 108/227 (47.58%), Postives = 143/227 (63.00%), Query Frame = 1
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGG 687
            D++RR+  FG+ L++LD+RQES RH++ +  +TRYL +G Y +W+E  K+ FL REL  KRPL+P   +  ++V+EVLDT +  AE   ++LGAYVISMA  ASDVLAV LL K+A           CP   L V PLFET+ DL     VI++L+SIDWYR  I      HQ VM+GYSDS KDAG   A W  Y+A E++V  C +  ++  LF       GRGG
Sbjct:  375 DVLRRIKCFGIHLVRLDIRQESTRHSDVISELTRYLGLGDYEQWNEQDKVAFLVRELASKRPLLPLAWQPSAEVQEVLDTCKAVAEQSREALGAYVISMARTASDVLAVHLLLKEA----------GCP-FRLDVCPLFETLDDLNNGASVIKELMSIDWYRGFI----QNHQMVMIGYSDSAKDAGVMAAGWAQYRAMEELVEVCEDASVELTLFHGRGGSIGRGG 586          
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_PSESM (Phosphoenolpyruvate carboxylase OS=Pseudomonas syringae pv. tomato GN=ppc PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.731e-49
Identity = 113/228 (49.56%), Postives = 143/228 (62.72%), Query Frame = 1
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGGG 690
            D +RR VTFG+ L++LD+RQ+S RH  A+  IT YL +G Y EWDE  +++FL REL  +RPL+P   +  +D  EVL T R  A   + SLG+YVISMA +ASDVLAV+LL K++ L       RP     +RVVPLFET+ DL  AG VI  LL +  YR  +     G QEVM+GYSDS KDAG   AAW  Y+AQE +V  C E  ++  LF       GRGGG
Sbjct:  377 DCLRRAVTFGLFLVRLDVRQDSTRHCAAMTEITDYLGLGRYEEWDEQTRIDFLLRELNNRRPLLPSYFKPAADTAEVLATCREVAAAPAASLGSYVISMAGSASDVLAVQLLLKESGLQ------RP-----MRVVPLFETLADLDNAGPVIETLLGLPGYRSRL----QGPQEVMIGYSDSAKDAGTTAAAWAQYRAQEKLVEICREQQVELLLFHGRGGTVGRGGG 589          
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_PSEAE (Phosphoenolpyruvate carboxylase OS=Pseudomonas aeruginosa GN=ppc PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.566e-49
Identity = 112/228 (49.12%), Postives = 142/228 (62.28%), Query Frame = 1
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGGG 690
            D +RR  TFG+ L++LD+RQ+S RHA AL  IT YL++G+Y EWDE  +LEFL  EL  +RPL+P   +  +D  EVL T R  A     SLG+YVISMA   SDVLAV+LL K        E G   P   +RVVPLFET+ DL  AG  + +LL++  YR  +    +G QEVM+GYSDS KDAG  TAAW  Y+AQE +V  C +  ++  LF       GRGGG
Sbjct:  377 DCLRRAATFGLFLVRLDVRQDSARHAAALSEITEYLELGSYDEWDEKTRLEFLLEELNSRRPLLPAHYQPSADTAEVLATCRAIAAAPPASLGSYVISMAGQPSDVLAVQLLLK--------ESGVDWP---MRVVPLFETLDDLDNAGPCMERLLTLPGYRSRL----SGVQEVMIGYSDSAKDAGTLTAAWAQYRAQEKLVEICRQHEVELLLFHGRGGTVGRGGG 589          
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_SHESH (Phosphoenolpyruvate carboxylase OS=Shewanella sediminis (strain HAW-EB3) GN=ppc PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.658e-49
Identity = 109/228 (47.81%), Postives = 142/228 (62.28%), Query Frame = 1
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGGG 690
            D++RR+  FG+ +++LD+RQ++ RH++ +  +TRYL MG Y+ WDE +K  FL REL GKRPL+P   +   DV EV+ T R+ A   + +LG+YVISMAS  SDVL V LL K        E G P P   +RVVPLFET+ DL  A   +  L +IDWYR +      GHQEVM+GYSDS KDAG   AAW  Y AQE++V    +  +K  LF       GRGGG
Sbjct:  377 DILRRIACFGIHMLRLDIRQDAERHSDVIAELTRYLGMGDYNHWDESEKQAFLLRELTGKRPLIPSNWQPSDDVAEVVSTCRLIATQPARALGSYVISMASKPSDVLTVLLLLK--------ETGCPHP---MRVVPLFETLDDLNNASSCMTALFAIDWYRGYT----KGHQEVMIGYSDSAKDAGVMAAAWAQYHAQEELVEVSRQAEVKLTLFHGRGGTIGRGGG 589          
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_PSEPK (Phosphoenolpyruvate carboxylase OS=Pseudomonas putida (strain KT2440) GN=ppc PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.658e-49
Identity = 112/228 (49.12%), Postives = 147/228 (64.47%), Query Frame = 1
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGGG 690
            D +RR VTFG+ L +LD+RQ++ RH +AL  IT YL +G Y++WDE++++ FL  ELK +RPL+P   +  +D  EVL T R  A   + SLG+YVISMA  ASDVLAV+LL K+A L       RP     +RVVPLFET+ DL  AG V+++LL +  YR  +     G QEVM+GYSDS KDAG   AAW  Y+AQE++V  C E  ++  LF       GRGGG
Sbjct:  374 DCLRRAVTFGLFLGRLDVRQDAARHRDALTEITDYLGLGRYADWDEEQRIAFLQAELKNRRPLLPAHFKPQADTAEVLATCREVAAAPAASLGSYVISMAGAASDVLAVQLLLKEAGLT------RP-----MRVVPLFETLADLDNAGPVMQRLLGLPGYRAGL----RGPQEVMIGYSDSAKDAGTTAAAWAQYRAQENLVRICAEHQVELLLFHGRGGTVGRGGG 586          
The following BLAST results are available for this feature:
BLAST of FC921382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
CAPP_PSEE44.213e-5049.12Phosphoenolpyruvate carboxylase OS=Pseudomonas ent... [more]
CAPP_PSEU51.226e-4949.56Phosphoenolpyruvate carboxylase OS=Pseudomonas stu... [more]
CAPP_MARMS1.226e-4947.81Phosphoenolpyruvate carboxylase OS=Marinomonas sp.... [more]
CAPP_PSEU21.601e-4949.56Phosphoenolpyruvate carboxylase OS=Pseudomonas syr... [more]
CAPP_PSEPF1.601e-4950.44Phosphoenolpyruvate carboxylase OS=Pseudomonas flu... [more]
CAPP_PHOPR1.601e-4947.58Phosphoenolpyruvate carboxylase OS=Photobacterium ... [more]
CAPP_PSESM2.731e-4949.56Phosphoenolpyruvate carboxylase OS=Pseudomonas syr... [more]
CAPP_PSEAE3.566e-4949.12Phosphoenolpyruvate carboxylase OS=Pseudomonas aer... [more]
CAPP_SHESH4.658e-4947.81Phosphoenolpyruvate carboxylase OS=Shewanella sedi... [more]
CAPP_PSEPK4.658e-4949.12Phosphoenolpyruvate carboxylase OS=Pseudomonas put... [more]

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Properties
Property NameValue
Genbank descriptionC32104C12EF RVDevelopN Citrus clementina cDNA clone C32104C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921382 ID=FC921382; Name=FC921382; organism=Citrus clementina; type=EST; length=705bp
CGGCTCGGTGATCTTATTAGGAGAGTTGTCACCTTTGGAATGGTGTTGAT
GAAGCTTGACTTGCGTCAGGAATCTGGTAGACATGCTGAAGCGCTAGATG
CAATTACGAGATATTTGGATATGGGTACATACAGTGAGTGGGACGAAGAC
AAAAAACTGGAATTTCTAACGAGGGAGTTGAAAGGAAAGCGGCCTTTAGT
TCCGCCTACTATTGAGGTTCCTTCTGATGTTAAAGAAGTCTTGGATACCT
TCCGTGTTGCTGCTGAGCTAGGGAGTGATTCACTTGGGGCATACGTCATT
TCTATGGCTTCTAATGCAAGTGATGTCCTTGCCGTAGAGCTTTTGCAGAA
AGACGCCCGACTTGCTGTTAGTGGTGAGTTAGGGAGACCATGTCCTGGTG
GAACGCTACGTGTGGTTCCTCTGTTTGAGACTGTGACGGACTTGAGAGGA
GCTGGTTTGGTGATCAGGAAATTGTTATCAATTGACTGGTATAGAAAGCA
CATTATAAAAAACCATAACGGGCATCAAGAGGTGATGGTTGGATATTCTG
ATTCTGGTAAAGATGCTGGACGCTTCACTGCTGCATGGGAACTATACAAA
GCCCAAGAGGATGTTGTGGCTGCCTGCAATGAGTTTGGTATTAAGTGACT
CTTCTCATGGGCGAAGAGGGAGTATGGCCGTGGTGGTGGCCTACATATCT
TGCAT
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