FC921382

Overview
NameFC921382
Unique NameFC921382
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_PSEP1 (Phosphoenolpyruvate carboxylase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=ppc PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.658e-49
Identity = 112/228 (49.12%), Postives = 147/228 (64.47%), Query Frame = 1
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGGG 690
            D +RR VTFG+ L +LD+RQ++ RH +AL  IT YL +G Y++WDE++++ FL  ELK +RPL+P   +  +D  EVL T R  A   + SLG+YVISMA  ASDVLAV+LL K+A L       RP     +RVVPLFET+ DL  AG V+++LL +  YR  +     G QEVM+GYSDS KDAG   AAW  Y+AQE++V  C E  ++  LF       GRGGG
Sbjct:  374 DCLRRAVTFGLFLGRLDVRQDAARHRDALTEITDYLGLGRYADWDEEQRIAFLQAELKNRRPLLPAHFKPQADTAEVLATCREVAAAPAASLGSYVISMAGAASDVLAVQLLLKEAGLT------RP-----MRVVPLFETLADLDNAGPVMQRLLGLPGYRAGL----RGPQEVMIGYSDSAKDAGTTAAAWAQYRAQENLVRICAEHQVELLLFHGRGGTVGRGGG 586          
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_SHEHH (Phosphoenolpyruvate carboxylase OS=Shewanella halifaxensis (strain HAW-EB4) GN=ppc PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.083e-49
Identity = 111/228 (48.68%), Postives = 142/228 (62.28%), Query Frame = 1
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGGG 690
            D++RR+  FG+ +++LD+RQ++ RHA+ +  +TRYL MG Y+ WDE +K  FL REL  KRPL+P   +   +V+EV+ T R+ A   + ++G+YVISMAS  SDVLAV LL K        E G P P   +RVVPLFET+ DL  A   +  L SIDWYR +      G QEVM+GYSDS KDAG   AAW  Y AQE +VA   E  IK  LF       GRGGG
Sbjct:  377 DMLRRIACFGIHMLRLDVRQDADRHADVIAELTRYLGMGDYAHWDETEKQSFLLRELSSKRPLIPANWQASPEVEEVVKTCRLVATQPARAMGSYVISMASQPSDVLAVLLLLK--------ETGCPHP---MRVVPLFETLDDLNNASACMSALFSIDWYRGYT----KGIQEVMIGYSDSAKDAGVMAAAWAQYTAQEKLVAISQEANIKLTLFHGRGGTIGRGGG 589          
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_PSEPG (Phosphoenolpyruvate carboxylase OS=Pseudomonas putida (strain GB-1) GN=ppc PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.083e-49
Identity = 112/228 (49.12%), Postives = 147/228 (64.47%), Query Frame = 1
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGGG 690
            D +RR VTFG+ L +LD+RQ++ RH +AL  IT YL +G Y++WDE++++ FL  ELK +RPL+P   +  +D  EVL T R  A   + SLG+YVISMA  ASDVLAV+LL K+A L       RP     +RVVPLFET+ DL  AG V+++LL +  YR  +     G QEVM+GYSDS KDAG   AAW  Y+AQE++V  C E  ++  LF       GRGGG
Sbjct:  374 DCLRRAVTFGLFLGRLDVRQDAARHRDALTEITDYLGLGRYADWDEEQRIGFLQAELKNRRPLLPAHFKPQADTAEVLATCREVAAAPAASLGSYVISMAGAASDVLAVQLLLKEAGLT------RP-----MRVVPLFETLADLDNAGPVMQRLLGLPGYRAGL----RGPQEVMIGYSDSAKDAGTTAAAWAQYRAQENLVRICAEHQVELLLFHGRGGTVGRGGG 586          
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_PSEA7 (Phosphoenolpyruvate carboxylase OS=Pseudomonas aeruginosa (strain PA7) GN=ppc PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.083e-49
Identity = 111/228 (48.68%), Postives = 143/228 (62.72%), Query Frame = 1
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGGG 690
            D +RR  TFG+ L++LD+RQ++GRHA AL  IT YL++G+Y+EWDE  +LEFL  EL  +RPL+P   +  ++  EVL T R  A     SLG+YVISMA   SDVLAV+LL K        E G   P   +RVVPLFET+ DL  AG  + +LL++  YR  +    +G QEVM+GYSDS KDAG  TAAW  Y+AQE +V  C    ++  LF       GRGGG
Sbjct:  377 DCLRRAATFGLFLVRLDVRQDAGRHAAALSEITEYLELGSYAEWDEKTRLEFLLEELNSRRPLLPAHYQPSAETAEVLATCRAIAAAPPASLGSYVISMAGQPSDVLAVQLLLK--------ESGVDWP---MRVVPLFETLDDLDNAGPCMERLLTLPGYRSRL----SGVQEVMIGYSDSAKDAGTLTAAWAQYRAQEKLVEICRHHEVELLLFHGRGGTVGRGGG 589          
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_PECCP (Phosphoenolpyruvate carboxylase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=ppc PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.945e-49
Identity = 115/230 (50.00%), Postives = 139/230 (60.43%), Query Frame = 1
Query:    1 RLGDLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGG 687
            RL D +RRV  FG+ L+++D+RQES RH EAL  ITRYL +G Y  W E  K  FL REL  KRPL+P   E  +D KEVLDT RV A+    S+ AYVISMA   SDVLAV LL K+A  + +           L V PLFET+ DL  A  V+ +LLSIDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI   LF       GRGG
Sbjct:  375 RLLDTLRRVRCFGVPLVRIDVRQESTRHTEALAEITRYLGLGDYESWSESDKQAFLIRELSSKRPLLPRYWEPSADTKEVLDTCRVIAKAPQGSIAAYVISMARTPSDVLAVHLLLKEAGCSFA-----------LPVAPLFETLDDLNNADDVMTQLLSIDWYRGFI----QGKQMVMIGYSDSAKDAGVMAASWAQYRAQDALIKTCEKAGIALTLFHGRGGSIGRGG 589          
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_SHEPA (Phosphoenolpyruvate carboxylase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=ppc PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.038e-48
Identity = 110/228 (48.25%), Postives = 143/228 (62.72%), Query Frame = 1
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGGG 690
            D++RR+  FG+ +++LD+RQ++ RHA+ +  +TRYL MG Y+ WDE +K  FL REL  KRPL+P   +  ++V+EV+ T R+ A   + ++G+YVISMAS  SDVLAV LL K        E G P P   +RVVPLFET+ DL  A   +  L +IDWYR +      G QEVM+GYSDS KDAG   AAW  Y AQE +VA   E  IK  LF       GRGGG
Sbjct:  377 DMLRRIACFGIHMLRLDVRQDAQRHADVIAELTRYLGMGDYAHWDESEKQSFLLRELSSKRPLIPANWQASAEVEEVVKTCRLVASQPARAMGSYVISMASQPSDVLAVLLLLK--------ETGCPHP---IRVVPLFETLDDLNNASNCMSALFAIDWYRGYT----KGIQEVMIGYSDSAKDAGVMAAAWAQYTAQEKLVAISQEANIKLTLFHGRGGTIGRGGG 589          
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_SHELP (Phosphoenolpyruvate carboxylase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=ppc PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.038e-48
Identity = 109/228 (47.81%), Postives = 141/228 (61.84%), Query Frame = 1
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGGG 690
            D++RR+  FG+ +++LD+RQ++ RH++ +  +TRYL +G +  WDE +K  FL REL GKRPL+P   E  ++V EV+ T R+ A     +LG+YVISMAS  SDVL V LL K+A        G   P   +RVVPLFET+ DL  A   I  L +IDWYR +      G QEVM+GYSDS KDAG   AAW  Y AQE +V  CN+  IK  LF       GRGGG
Sbjct:  377 DMLRRLACFGIHMLRLDIRQDAQRHSDVIAELTRYLGLGDFDHWDEHEKQAFLLRELSGKRPLIPHNWEPSAEVAEVISTVRLIASQSPKALGSYVISMASQPSDVLTVLLLLKEA--------GCQHP---MRVVPLFETLEDLNNAASCISALFAIDWYRGYC----KGSQEVMIGYSDSAKDAGVMAAAWAQYSAQEKLVKVCNQADIKLTLFHGRGGTIGRGGG 589          
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_ERWT9 (Phosphoenolpyruvate carboxylase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=ppc PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.770e-48
Identity = 113/230 (49.13%), Postives = 139/230 (60.43%), Query Frame = 1
Query:    1 RLGDLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGG 687
            +L D +RRV  FG+ L+++D+RQES RH EA+  ITRYL +G Y  W E  K  FL REL  KRPL P   E  +D KEVLDT RVAAE    S+ AYVISMA   SDVLAV LL K+A +  +           + V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI   LF       GRGG
Sbjct:  375 QLLDTLRRVKCFGVPLVRIDIRQESTRHTEAIAEITRYLGLGDYESWSEADKQAFLIRELNSKRPLTPRQWEPSADTKEVLDTCRVAAEAPKGSIAAYVISMAKTPSDVLAVHLLLKEAGIDYA-----------MPVAPLFETLDDLNNANGVMSQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGITLTLFHGRGGSIGRGG 589          
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_ERWCT (Phosphoenolpyruvate carboxylase OS=Erwinia carotovora subsp. atroseptica GN=ppc PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.312e-48
Identity = 114/227 (50.22%), Postives = 138/227 (60.79%), Query Frame = 1
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGG 687
            D +RRV  FG+ L+++D+RQES RH +AL  ITRYL +G Y  W E  K  FL REL  KRPL+P   E  +D KEVLDT RV A+    S+ AYVISMA   SDVLAV+LL K+A           CP   L V PLFET+ DL  A  V+ +LLSIDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI   LF       GRGG
Sbjct:  378 DTLRRVRCFGVPLVRIDVRQESTRHTDALAEITRYLGLGDYESWSESDKQAFLIRELSSKRPLLPRYWEPSADTKEVLDTCRVIAKAPQGSIAAYVISMARTPSDVLAVQLLLKEA----------GCP-FALPVAPLFETLDDLNNADDVMTQLLSIDWYRGFI----QGKQMVMIGYSDSAKDAGVMAASWAQYRAQDALIKTCEKAGIALTLFHGRGGSIGRGG 589          
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_ACIAD (Phosphoenolpyruvate carboxylase OS=Acinetobacter sp. (strain ADP1) GN=ppc PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.019e-48
Identity = 110/238 (46.22%), Postives = 142/238 (59.66%), Query Frame = 1
Query:    1 RLGDLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPS-------DVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK*LFSWAKREYGRGGGL 693
            +L D I RV  FG+ L+KLD+RQESGRH +A+ AIT YL +G +  W E  +  FL +EL+ KRPL+P  +  P        DVKEV  T R  AE   +SLGAY+ISMA  ASDVLAV LLQK+A +              LRVVPLFET+ DL GA   +  L ++ WY++HI     G  EVM+GYSDS KDAG  +A W  Y+AQE++ A     G++         +GRGG +
Sbjct:  378 KLLDFIYRVNCFGIELLKLDIRQESGRHRQAISAITEYLGLGNFESWTEQARQNFLIQELQSKRPLLPKYLNEPEGSLIEHPDVKEVFATMRTLAEQPPESLGAYIISMAEYASDVLAVLLLQKEAGIL-----------QPLRVVPLFETLKDLDGAAKTMETLFNMHWYKQHI----QGKHEVMIGYSDSAKDAGFMSANWAQYRAQEELTAVAKSHGVQ-----LTLFHGRGGSI 595          
The following BLAST results are available for this feature:
BLAST of FC921382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
CAPP_PSEP14.658e-4949.12Phosphoenolpyruvate carboxylase OS=Pseudomonas put... [more]
CAPP_SHEHH6.083e-4948.68Phosphoenolpyruvate carboxylase OS=Shewanella hali... [more]
CAPP_PSEPG6.083e-4949.12Phosphoenolpyruvate carboxylase OS=Pseudomonas put... [more]
CAPP_PSEA76.083e-4948.68Phosphoenolpyruvate carboxylase OS=Pseudomonas aer... [more]
CAPP_PECCP7.945e-4950.00Phosphoenolpyruvate carboxylase OS=Pectobacterium ... [more]
CAPP_SHEPA1.038e-4848.25Phosphoenolpyruvate carboxylase OS=Shewanella peal... [more]
CAPP_SHELP1.038e-4847.81Phosphoenolpyruvate carboxylase OS=Shewanella loih... [more]
CAPP_ERWT91.770e-4849.13Phosphoenolpyruvate carboxylase OS=Erwinia tasmani... [more]
CAPP_ERWCT2.312e-4850.22Phosphoenolpyruvate carboxylase OS=Erwinia carotov... [more]
CAPP_ACIAD3.019e-4846.22Phosphoenolpyruvate carboxylase OS=Acinetobacter s... [more]

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Properties
Property NameValue
Genbank descriptionC32104C12EF RVDevelopN Citrus clementina cDNA clone C32104C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921382 ID=FC921382; Name=FC921382; organism=Citrus clementina; type=EST; length=705bp
CGGCTCGGTGATCTTATTAGGAGAGTTGTCACCTTTGGAATGGTGTTGAT
GAAGCTTGACTTGCGTCAGGAATCTGGTAGACATGCTGAAGCGCTAGATG
CAATTACGAGATATTTGGATATGGGTACATACAGTGAGTGGGACGAAGAC
AAAAAACTGGAATTTCTAACGAGGGAGTTGAAAGGAAAGCGGCCTTTAGT
TCCGCCTACTATTGAGGTTCCTTCTGATGTTAAAGAAGTCTTGGATACCT
TCCGTGTTGCTGCTGAGCTAGGGAGTGATTCACTTGGGGCATACGTCATT
TCTATGGCTTCTAATGCAAGTGATGTCCTTGCCGTAGAGCTTTTGCAGAA
AGACGCCCGACTTGCTGTTAGTGGTGAGTTAGGGAGACCATGTCCTGGTG
GAACGCTACGTGTGGTTCCTCTGTTTGAGACTGTGACGGACTTGAGAGGA
GCTGGTTTGGTGATCAGGAAATTGTTATCAATTGACTGGTATAGAAAGCA
CATTATAAAAAACCATAACGGGCATCAAGAGGTGATGGTTGGATATTCTG
ATTCTGGTAAAGATGCTGGACGCTTCACTGCTGCATGGGAACTATACAAA
GCCCAAGAGGATGTTGTGGCTGCCTGCAATGAGTTTGGTATTAAGTGACT
CTTCTCATGGGCGAAGAGGGAGTATGGCCGTGGTGGTGGCCTACATATCT
TGCAT
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