FC921382

Overview
NameFC921382
Unique NameFC921382
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_SALNS (Phosphoenolpyruvate carboxylase OS=Salmonella newport (strain SL254) GN=ppc PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.784e-48
Identity = 110/227 (48.46%), Postives = 138/227 (60.79%), Query Frame = 1 
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGG 687
            D +RRV  FG+ L+++D+RQES RH EAL  ITRYL +G Y  W E  K  FL REL  KRPL+P   E  +D +EVL+T +V AE    S+ AYVISMA   SDVLAV LL K+A +           G  + V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI+  LF       GRGG
Sbjct:  378 DTLRRVKCFGVPLVRIDIRQESTRHTEALGEITRYLGIGDYESWSEADKQAFLIRELNSKRPLLPRNWEPSNDTREVLETCKVIAEAPKGSIAAYVISMAKTPSDVLAVHLLLKEAGI-----------GFAMPVAPLFETLDDLNNADDVMTQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGG 589
[Close]
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_SALHS (Phosphoenolpyruvate carboxylase OS=Salmonella heidelberg (strain SL476) GN=ppc PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.784e-48
Identity = 110/227 (48.46%), Postives = 138/227 (60.79%), Query Frame = 1 
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGG 687
            D +RRV  FG+ L+++D+RQES RH EAL  ITRYL +G Y  W E  K  FL REL  KRPL+P   E  +D +EVL+T +V AE    S+ AYVISMA   SDVLAV LL K+A +           G  + V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI+  LF       GRGG
Sbjct:  378 DTLRRVKCFGVPLVRIDIRQESTRHTEALGEITRYLGIGDYESWSEADKQAFLIRELNSKRPLLPRNWEPSNDTREVLETCKVIAEAPKGSIAAYVISMAKTPSDVLAVHLLLKEAGI-----------GFAMPVAPLFETLDDLNNADDVMTQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGG 589
[Close]
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_SALG2 (Phosphoenolpyruvate carboxylase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=ppc PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.784e-48
Identity = 110/227 (48.46%), Postives = 138/227 (60.79%), Query Frame = 1 
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGG 687
            D +RRV  FG+ L+++D+RQES RH EAL  ITRYL +G Y  W E  K  FL REL  KRPL+P   E  +D +EVL+T +V AE    S+ AYVISMA   SDVLAV LL K+A +           G  + V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI+  LF       GRGG
Sbjct:  378 DTLRRVKCFGVPLVRIDIRQESTRHTEALGEITRYLGIGDYESWSEADKQAFLIRELNSKRPLLPRNWEPSNDTREVLETCKVIAEAPKGSIAAYVISMAKTPSDVLAVHLLLKEAGI-----------GFAMPVAPLFETLDDLNNADDVMTQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGG 589
[Close]
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_SALEP (Phosphoenolpyruvate carboxylase OS=Salmonella enteritidis PT4 (strain P125109) GN=ppc PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.784e-48
Identity = 110/227 (48.46%), Postives = 138/227 (60.79%), Query Frame = 1 
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGG 687
            D +RRV  FG+ L+++D+RQES RH EAL  ITRYL +G Y  W E  K  FL REL  KRPL+P   E  +D +EVL+T +V AE    S+ AYVISMA   SDVLAV LL K+A +           G  + V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI+  LF       GRGG
Sbjct:  378 DTLRRVKCFGVPLVRIDIRQESTRHTEALGEITRYLGIGDYESWSEADKQAFLIRELNSKRPLLPRNWEPSNDTREVLETCKVIAEAPKGSIAAYVISMAKTPSDVLAVHLLLKEAGI-----------GFAMPVAPLFETLDDLNNADDVMTQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGG 589
[Close]
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_SALDC (Phosphoenolpyruvate carboxylase OS=Salmonella dublin (strain CT_02021853) GN=ppc PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.784e-48
Identity = 110/227 (48.46%), Postives = 138/227 (60.79%), Query Frame = 1 
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGG 687
            D +RRV  FG+ L+++D+RQES RH EAL  ITRYL +G Y  W E  K  FL REL  KRPL+P   E  +D +EVL+T +V AE    S+ AYVISMA   SDVLAV LL K+A +           G  + V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI+  LF       GRGG
Sbjct:  378 DTLRRVKCFGVPLVRIDIRQESTRHTEALGEITRYLGIGDYESWSEADKQAFLIRELNSKRPLLPRNWEPSNDTREVLETCKVIAEAPKGSIAAYVISMAKTPSDVLAVHLLLKEAGI-----------GFAMPVAPLFETLDDLNNADDVMTQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGG 589
[Close]
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_SALAR (Phosphoenolpyruvate carboxylase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=ppc PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.784e-48
Identity = 110/227 (48.46%), Postives = 138/227 (60.79%), Query Frame = 1 
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGG 687
            D +RRV  FG+ L+++D+RQES RH EAL  ITRYL +G Y  W E  K  FL REL  KRPL+P   E  +D +EVL+T +V AE    S+ AYVISMA   SDVLAV LL K+A +           G  + V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI+  LF       GRGG
Sbjct:  378 DTLRRVKCFGVPLVRIDIRQESTRHTEALGEITRYLGIGDYESWSEADKQAFLIRELNSKRPLLPRNWEPSNDTREVLETCKVIAEAPKGSIAAYVISMAKTPSDVLAVHLLLKEAGI-----------GFAMPVAPLFETLDDLNNADDVMTQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGG 589
[Close]
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_PSEF5 (Phosphoenolpyruvate carboxylase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=ppc PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.498e-47
Identity = 113/228 (49.56%), Postives = 143/228 (62.72%), Query Frame = 1 
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGGG 690
            D +RR VTFG+ L++LD+RQ+S RH  A+  IT YL +G Y +W E+ ++ FL REL  +RPL+P   +  +D  EVL T R  A   + SLG+YVISMA  ASDVLAV+LL K+     SG L RP     +RVVPLFET+ DL  AG V+ KLL +  YR  +     G QEVM+GYSDS KDAG   AAW  Y+AQE +V  C E  ++  LF       GRGGG
Sbjct:  375 DCLRRAVTFGLFLVRLDVRQDSSRHTSAMTEITDYLGLGRYEDWSEEDRITFLMRELSSRRPLLPGYFKPSADTAEVLATCREIAGAPAASLGSYVISMAGAASDVLAVQLLLKE-----SGVL-RP-----MRVVPLFETLADLDNAGPVMEKLLHMPGYRSRL----QGPQEVMIGYSDSAKDAGTTAAAWAQYRAQERLVDICREQQVELLLFHGRGGTVGRGGG 587
[Close]
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_YERE8 (Phosphoenolpyruvate carboxylase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=ppc PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.556e-47
Identity = 113/230 (49.13%), Postives = 140/230 (60.87%), Query Frame = 1 
Query:    1 RLGDLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGG 687
            +L D +RRV  FG+ L+++D+RQES RH +A+  +TRYL +G Y  W E  K  FL REL  KRPLVP   E  +D +EVL+T RV AE    S+ AYVISMA   SDVLAV LL K+A           CP  TL V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI   LF       GRGG
Sbjct:  374 QLLDTLRRVRCFGVPLVRIDVRQESTRHTDAIAELTRYLGLGDYESWSEADKQAFLIRELNSKRPLVPLKWEPSADTQEVLETCRVIAEAPQGSIAAYVISMAKVPSDVLAVHLLLKEA----------GCP-FTLPVAPLFETLDDLNNADDVMTQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYRAQDALIKTCEKAGISLTLFHGRGGSIGRGG 588
[Close]
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_SERP5 (Phosphoenolpyruvate carboxylase OS=Serratia proteamaculans (strain 568) GN=ppc PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.556e-47
Identity = 112/230 (48.70%), Postives = 139/230 (60.43%), Query Frame = 1 
Query:    1 RLGDLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGG 687
            +L D +RRV  FG+ L+++D+RQES RH EA+  +TRYL +G Y  W E  K  FL REL  KRPLVP   E  +D +EVL+T RV AE    S+ AYVISMA   SDVLAV LL K+A           CP   L V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + G+   LF       GRGG
Sbjct:  374 QLLDTLRRVRCFGVPLVRIDVRQESTRHTEAIAELTRYLGLGDYESWSEADKQAFLIRELNSKRPLVPLKWEPSADTQEVLETCRVIAEAPQGSIAAYVISMARTPSDVLAVHLLLKEA----------GCP-FALPVAPLFETLDDLNNADDVMTQLLNIDWYRGFI----QGKQMVMIGYSDSAKDAGVMAASWAQYRAQDALIKTCEKAGVALTLFHGRGGSIGRGG 588
[Close]
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_CITK8 (Phosphoenolpyruvate carboxylase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=ppc PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.556e-47
Identity = 108/227 (47.58%), Postives = 138/227 (60.79%), Query Frame = 1 
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGG 687
            D +RRV  FG+ L+++D+RQES RH EAL  +TRYL +G Y  W E  K  FL REL  KRPL+P   E   D +EVL+T +V AE    S+ AYVISMA   SDVLAV LL K+A ++ +           + V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI+  LF       GRGG
Sbjct:  378 DTLRRVKCFGVPLVRIDIRQESTRHTEALGELTRYLGIGDYESWSEADKQAFLIRELNSKRPLLPRQWEPSDDTREVLETCQVIAEAPLGSIAAYVISMAKTPSDVLAVHLLLKEAGISFA-----------MPVAPLFETLDDLNNADAVMTQLLNIDWYRGFI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGG 589
The following BLAST results are available for this feature:
BLAST of FC921382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
CAPP_SALNS8.784e-4848.46Phosphoenolpyruvate carboxylase OS=Salmonella newp... [more]
CAPP_SALHS8.784e-4848.46Phosphoenolpyruvate carboxylase OS=Salmonella heid... [more]
CAPP_SALG28.784e-4848.46Phosphoenolpyruvate carboxylase OS=Salmonella gall... [more]
CAPP_SALEP8.784e-4848.46Phosphoenolpyruvate carboxylase OS=Salmonella ente... [more]
CAPP_SALDC8.784e-4848.46Phosphoenolpyruvate carboxylase OS=Salmonella dubl... [more]
CAPP_SALAR8.784e-4848.46Phosphoenolpyruvate carboxylase OS=Salmonella ariz... [more]
CAPP_PSEF51.498e-4749.56Phosphoenolpyruvate carboxylase OS=Pseudomonas flu... [more]
CAPP_YERE82.556e-4749.13Phosphoenolpyruvate carboxylase OS=Yersinia entero... [more]
CAPP_SERP52.556e-4748.70Phosphoenolpyruvate carboxylase OS=Serratia protea... [more]
CAPP_CITK82.556e-4747.58Phosphoenolpyruvate carboxylase OS=Citrobacter kos... [more]

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Properties
Property NameValue
Genbank descriptionC32104C12EF RVDevelopN Citrus clementina cDNA clone C32104C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921382 ID=FC921382; Name=FC921382; organism=Citrus clementina; type=EST; length=705bp
CGGCTCGGTGATCTTATTAGGAGAGTTGTCACCTTTGGAATGGTGTTGAT
GAAGCTTGACTTGCGTCAGGAATCTGGTAGACATGCTGAAGCGCTAGATG
CAATTACGAGATATTTGGATATGGGTACATACAGTGAGTGGGACGAAGAC
AAAAAACTGGAATTTCTAACGAGGGAGTTGAAAGGAAAGCGGCCTTTAGT
TCCGCCTACTATTGAGGTTCCTTCTGATGTTAAAGAAGTCTTGGATACCT
TCCGTGTTGCTGCTGAGCTAGGGAGTGATTCACTTGGGGCATACGTCATT
TCTATGGCTTCTAATGCAAGTGATGTCCTTGCCGTAGAGCTTTTGCAGAA
AGACGCCCGACTTGCTGTTAGTGGTGAGTTAGGGAGACCATGTCCTGGTG
GAACGCTACGTGTGGTTCCTCTGTTTGAGACTGTGACGGACTTGAGAGGA
GCTGGTTTGGTGATCAGGAAATTGTTATCAATTGACTGGTATAGAAAGCA
CATTATAAAAAACCATAACGGGCATCAAGAGGTGATGGTTGGATATTCTG
ATTCTGGTAAAGATGCTGGACGCTTCACTGCTGCATGGGAACTATACAAA
GCCCAAGAGGATGTTGTGGCTGCCTGCAATGAGTTTGGTATTAAGTGACT
CTTCTCATGGGCGAAGAGGGAGTATGGCCGTGGTGGTGGCCTACATATCT
TGCAT
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