FC921382

Overview
NameFC921382
Unique NameFC921382
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_ECO7I (Phosphoenolpyruvate carboxylase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=ppc PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.338e-47
Identity = 108/227 (47.58%), Postives = 138/227 (60.79%), Query Frame = 1 
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGG 687
            D +RRV  FG+ L+++D+RQES RH EAL  +TRYL +G Y  W E  K  FL REL  KRPL+P   +  ++ +EVLDT +V AE    S+ AYVISMA   SDVLAV LL K+A +           G  + V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI+  LF       GRGG
Sbjct:  378 DTLRRVKCFGVPLVRIDIRQESTRHTEALGELTRYLGIGDYESWSEADKQAFLIRELNSKRPLLPRNWQPSAETREVLDTCQVIAEAPQGSIAAYVISMAKTPSDVLAVHLLLKEAGI-----------GFAMPVAPLFETLDDLNNANDVMTQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGG 589
[Close]
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_ECO5E (Phosphoenolpyruvate carboxylase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=ppc PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.338e-47
Identity = 108/227 (47.58%), Postives = 138/227 (60.79%), Query Frame = 1 
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGG 687
            D +RRV  FG+ L+++D+RQES RH EAL  +TRYL +G Y  W E  K  FL REL  KRPL+P   +  ++ +EVLDT +V AE    S+ AYVISMA   SDVLAV LL K+A +           G  + V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI+  LF       GRGG
Sbjct:  378 DTLRRVKCFGVPLVRIDIRQESTRHTEALGELTRYLGIGDYESWSEADKQAFLIRELNSKRPLLPRNWQPSAETREVLDTCQVIAEAPQGSIAAYVISMAKTPSDVLAVHLLLKEAGI-----------GFAMPVAPLFETLDDLNNANDVMTQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGG 589
[Close]
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_ECO57 (Phosphoenolpyruvate carboxylase OS=Escherichia coli O157:H7 GN=ppc PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.338e-47
Identity = 108/227 (47.58%), Postives = 138/227 (60.79%), Query Frame = 1 
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGG 687
            D +RRV  FG+ L+++D+RQES RH EAL  +TRYL +G Y  W E  K  FL REL  KRPL+P   +  ++ +EVLDT +V AE    S+ AYVISMA   SDVLAV LL K+A +           G  + V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI+  LF       GRGG
Sbjct:  378 DTLRRVKCFGVPLVRIDIRQESTRHTEALGELTRYLGIGDYESWSEADKQAFLIRELNSKRPLLPRNWQPSAETREVLDTCQVIAEAPQGSIAAYVISMAKTPSDVLAVHLLLKEAGI-----------GFAMPVAPLFETLDDLNNANDVMTQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGG 589
[Close]
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_ECO55 (Phosphoenolpyruvate carboxylase OS=Escherichia coli (strain 55989 / EAEC) GN=ppc PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.338e-47
Identity = 108/227 (47.58%), Postives = 138/227 (60.79%), Query Frame = 1 
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGG 687
            D +RRV  FG+ L+++D+RQES RH EAL  +TRYL +G Y  W E  K  FL REL  KRPL+P   +  ++ +EVLDT +V AE    S+ AYVISMA   SDVLAV LL K+A +           G  + V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI+  LF       GRGG
Sbjct:  378 DTLRRVKCFGVPLVRIDIRQESTRHTEALGELTRYLGIGDYESWSEADKQAFLIRELNSKRPLLPRNWQPSAETREVLDTCQVIAEAPQGSIAAYVISMAKTPSDVLAVHLLLKEAGI-----------GFAMPVAPLFETLDDLNNANDVMTQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGG 589
[Close]
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_ECO45 (Phosphoenolpyruvate carboxylase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=ppc PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.338e-47
Identity = 108/227 (47.58%), Postives = 138/227 (60.79%), Query Frame = 1 
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGG 687
            D +RRV  FG+ L+++D+RQES RH EAL  +TRYL +G Y  W E  K  FL REL  KRPL+P   +  ++ +EVLDT +V AE    S+ AYVISMA   SDVLAV LL K+A +           G  + V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI+  LF       GRGG
Sbjct:  378 DTLRRVKCFGVPLVRIDIRQESTRHTEALGELTRYLGIGDYESWSEADKQAFLIRELNSKRPLLPRNWQPSAETREVLDTCQVIAEAPQGSIAAYVISMAKTPSDVLAVHLLLKEAGI-----------GFAMPVAPLFETLDDLNNANDVMTQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGG 589
[Close]
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_ECO27 (Phosphoenolpyruvate carboxylase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=ppc PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.338e-47
Identity = 108/227 (47.58%), Postives = 138/227 (60.79%), Query Frame = 1 
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGG 687
            D +RRV  FG+ L+++D+RQES RH EAL  +TRYL +G Y  W E  K  FL REL  KRPL+P   +  ++ +EVLDT +V AE    S+ AYVISMA   SDVLAV LL K+A +           G  + V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI+  LF       GRGG
Sbjct:  378 DTLRRVKCFGVPLVRIDIRQESTRHTEALGELTRYLGIGDYESWSEADKQAFLIRELNSKRPLLPRNWQPSAETREVLDTCQVIAEAPQGSIAAYVISMAKTPSDVLAVHLLLKEAGI-----------GFAMPVAPLFETLDDLNNANDVMTQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGG 589
[Close]
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_ECO24 (Phosphoenolpyruvate carboxylase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=ppc PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.338e-47
Identity = 108/227 (47.58%), Postives = 138/227 (60.79%), Query Frame = 1 
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGG 687
            D +RRV  FG+ L+++D+RQES RH EAL  +TRYL +G Y  W E  K  FL REL  KRPL+P   +  ++ +EVLDT +V AE    S+ AYVISMA   SDVLAV LL K+A +           G  + V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI+  LF       GRGG
Sbjct:  378 DTLRRVKCFGVPLVRIDIRQESTRHTEALGELTRYLGIGDYESWSEADKQAFLIRELNSKRPLLPRNWQPSAETREVLDTCQVIAEAPQGSIAAYVISMAKTPSDVLAVHLLLKEAGI-----------GFAMPVAPLFETLDDLNNANDVMTQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGG 589
[Close]
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_SALCH (Phosphoenolpyruvate carboxylase OS=Salmonella choleraesuis GN=ppc PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.359e-47
Identity = 109/227 (48.02%), Postives = 137/227 (60.35%), Query Frame = 1 
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGG 687
            D +RRV  FG+ L+++D+RQES RH EAL  ITRYL +G Y  W E  K   L REL  KRPL+P   E  +D +EVL+T +V AE    S+ AYVISMA   SDVLAV LL K+A +           G  + V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI+  LF       GRGG
Sbjct:  378 DTLRRVKCFGVPLVRIDIRQESTRHTEALGEITRYLGIGDYESWSEADKQALLIRELNSKRPLLPRNWEPSNDTREVLETCKVIAEAPKGSIAAYVISMAKTPSDVLAVHLLLKEAGI-----------GFAMPVAPLFETLDDLNNADDVMTQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGG 589
[Close]
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_CHRSD (Phosphoenolpyruvate carboxylase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=ppc PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.359e-47
Identity = 106/228 (46.49%), Postives = 140/228 (61.40%), Query Frame = 1 
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGGG 690
            D +RRV  FG+ L KLD+RQE+GRHA+  D ++  L +G Y +WDE ++ +FL  EL+  RPL+P   +  ++ +EV+DTFRV A    ++LG YVISMA   SDVLAV LL K+    V G+L  P       + PLFET+ DL  AG VI +LLS+  YR+         QEVM+GYSDS KDAG+  AAW  Y+AQE +V  C +  +   LF       GRGGG
Sbjct:  379 DTLRRVAVFGVSLTKLDIRQEAGRHAQVFDELSDCLGLGHYRDWDEAQRQDFLLEELESPRPLIPRRWDCSAETREVIDTFRVIAREHREALGTYVISMAGQPSDVLAVALLMKE----VGGDLQLP-------IAPLFETLDDLNRAGDVIERLLSLPGYRRMA----GDGQEVMIGYSDSAKDAGQLAAAWAQYRAQEQLVGICRQHDVALTLFHGRGGTVGRGGG 591
[Close]
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_ACIBT (Phosphoenolpyruvate carboxylase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=ppc PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.359e-47
Identity = 108/238 (45.38%), Postives = 142/238 (59.66%), Query Frame = 1 
Query:    1 RLGDLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPS-------DVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK*LFSWAKREYGRGGGL 693
            +L D I RV  FG+ L+KLD+RQESGRH +A+ AIT YL +G +  W E  +  FL +EL+ KRPL+P  I  P        DV+EV  T R  A+   +SLGAY+ISMA   SDVLAV LLQK+A +              LRVVPLFET+ DL GA   +  L ++ WY++HI     G  EVM+GYSDS KDAG  +A W  Y+AQE++ A   + G++         +GRGG +
Sbjct:  378 QLLDFIYRVNCFGIELLKLDIRQESGRHRQAISAITEYLGLGNFESWTEQARQNFLIQELQSKRPLLPKYINEPEGSLIGHPDVQEVFATMRTLADQPPESLGAYIISMAEYPSDVLAVLLLQKEAGIQ-----------HPLRVVPLFETLKDLDGAATTMNTLFNMHWYKQHI----QGKHEVMIGYSDSAKDAGFMSANWAQYRAQEELTAIARKHGVQ-----LTLFHGRGGSI 595
The following BLAST results are available for this feature:
BLAST of FC921382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
CAPP_ECO7I3.338e-4747.58Phosphoenolpyruvate carboxylase OS=Escherichia col... [more]
CAPP_ECO5E3.338e-4747.58Phosphoenolpyruvate carboxylase OS=Escherichia col... [more]
CAPP_ECO573.338e-4747.58Phosphoenolpyruvate carboxylase OS=Escherichia col... [more]
CAPP_ECO553.338e-4747.58Phosphoenolpyruvate carboxylase OS=Escherichia col... [more]
CAPP_ECO453.338e-4747.58Phosphoenolpyruvate carboxylase OS=Escherichia col... [more]
CAPP_ECO273.338e-4747.58Phosphoenolpyruvate carboxylase OS=Escherichia col... [more]
CAPP_ECO243.338e-4747.58Phosphoenolpyruvate carboxylase OS=Escherichia col... [more]
CAPP_SALCH4.359e-4748.02Phosphoenolpyruvate carboxylase OS=Salmonella chol... [more]
CAPP_CHRSD4.359e-4746.49Phosphoenolpyruvate carboxylase OS=Chromohalobacte... [more]
CAPP_ACIBT4.359e-4745.38Phosphoenolpyruvate carboxylase OS=Acinetobacter b... [more]

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Properties
Property NameValue
Genbank descriptionC32104C12EF RVDevelopN Citrus clementina cDNA clone C32104C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921382 ID=FC921382; Name=FC921382; organism=Citrus clementina; type=EST; length=705bp
CGGCTCGGTGATCTTATTAGGAGAGTTGTCACCTTTGGAATGGTGTTGAT
GAAGCTTGACTTGCGTCAGGAATCTGGTAGACATGCTGAAGCGCTAGATG
CAATTACGAGATATTTGGATATGGGTACATACAGTGAGTGGGACGAAGAC
AAAAAACTGGAATTTCTAACGAGGGAGTTGAAAGGAAAGCGGCCTTTAGT
TCCGCCTACTATTGAGGTTCCTTCTGATGTTAAAGAAGTCTTGGATACCT
TCCGTGTTGCTGCTGAGCTAGGGAGTGATTCACTTGGGGCATACGTCATT
TCTATGGCTTCTAATGCAAGTGATGTCCTTGCCGTAGAGCTTTTGCAGAA
AGACGCCCGACTTGCTGTTAGTGGTGAGTTAGGGAGACCATGTCCTGGTG
GAACGCTACGTGTGGTTCCTCTGTTTGAGACTGTGACGGACTTGAGAGGA
GCTGGTTTGGTGATCAGGAAATTGTTATCAATTGACTGGTATAGAAAGCA
CATTATAAAAAACCATAACGGGCATCAAGAGGTGATGGTTGGATATTCTG
ATTCTGGTAAAGATGCTGGACGCTTCACTGCTGCATGGGAACTATACAAA
GCCCAAGAGGATGTTGTGGCTGCCTGCAATGAGTTTGGTATTAAGTGACT
CTTCTCATGGGCGAAGAGGGAGTATGGCCGTGGTGGTGGCCTACATATCT
TGCAT
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