FC921387

Overview
NameFC921387
Unique NameFC921387
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921387 vs. ExPASy Swiss-Prot
Match: UBP17_HUMAN (Ubiquitin carboxyl-terminal hydrolase 17 OS=Homo sapiens GN=USP17A PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 2.246e-12
Identity = 31/74 (41.89%), Postives = 47/74 (63.51%), Query Frame = 2
Query:  389 KPTGVGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASSGKVLSP 610
            +P  VGAGL+N+GNTC++NA LQC T+T PL   + S +H + C       C++C ++ HI  +L + G V+ P
Sbjct:   74 RPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCH--RHKGCMLCTMQAHITRALHNPGHVIQP 145          

HSP 2 Score: 22.7126 bits (47), Expect = 2.246e-12
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  649 FSRYQQEDAHEF 684
            F R +QEDAHEF
Sbjct:  153 FHRGKQEDAHEF 164          
BLAST of FC921387 vs. ExPASy Swiss-Prot
Match: U17L5_HUMAN (Ubiquitin carboxyl-terminal hydrolase 17-like protein 5 OS=Homo sapiens GN=USP17L5 PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 2.246e-12
Identity = 31/74 (41.89%), Postives = 47/74 (63.51%), Query Frame = 2
Query:  389 KPTGVGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASSGKVLSP 610
            +P  VGAGL+N+GNTC++NA LQC T+T PL   + S +H + C       C++C ++ HI  +L + G V+ P
Sbjct:   74 RPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCH--RHKGCMLCTMQAHITRALHNPGHVIQP 145          

HSP 2 Score: 22.7126 bits (47), Expect = 2.246e-12
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  649 FSRYQQEDAHEF 684
            F R +QEDAHEF
Sbjct:  153 FHRGKQEDAHEF 164          
BLAST of FC921387 vs. ExPASy Swiss-Prot
Match: U17L6_HUMAN (Ubiquitin carboxyl-terminal hydrolase 17-like protein 6 OS=Homo sapiens GN=USP17L6 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 2.265e-12
Identity = 31/74 (41.89%), Postives = 47/74 (63.51%), Query Frame = 2
Query:  389 KPTGVGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASSGKVLSP 610
            +P  VGAGL+N+GNTC++NA LQC T+T PL   + S +H + C       C++C ++ HI  +L + G V+ P
Sbjct:   74 RPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCH--RHKGCMLCTMQAHITRALHNPGHVIQP 145          

HSP 2 Score: 22.7126 bits (47), Expect = 2.265e-12
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  649 FSRYQQEDAHEF 684
            F R +QEDAHEF
Sbjct:  153 FHRGKQEDAHEF 164          
BLAST of FC921387 vs. ExPASy Swiss-Prot
Match: U17L2_HUMAN (Ubiquitin carboxyl-terminal hydrolase 17-like protein 2 OS=Homo sapiens GN=USP17L2 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.788e-12
Identity = 32/74 (43.24%), Postives = 46/74 (62.16%), Query Frame = 2
Query:  389 KPTGVGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASSGKVLSP 610
            +P  VGAGL+N+GNTC+ NA LQC T+T PL   + S +H + C       C++C ++ HI  +L S G V+ P
Sbjct:   74 RPAAVGAGLQNMGNTCYENASLQCLTYTPPLANYMLSREHSQTCQ--RPKCCMLCTMQAHITWALHSPGHVIQP 145          

HSP 2 Score: 22.7126 bits (47), Expect = 3.788e-12
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  649 FSRYQQEDAHEF 684
            F R +QEDAHEF
Sbjct:  153 FHRGKQEDAHEF 164          
BLAST of FC921387 vs. ExPASy Swiss-Prot
Match: UBPW_MOUSE (Ubiquitin carboxyl-terminal hydrolase DUB-1 OS=Mus musculus GN=Dub1 PE=1 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 6.683e-11
Identity = 33/79 (41.77%), Postives = 48/79 (60.76%), Query Frame = 2
Query:  392 PTGVGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSL--ASSGKVLSPRKLV 622
            P G G GL+N GN+C++NA LQC THT PL   + S +H + C  + EG C +CA+   +  SL  + SG V+ P  ++
Sbjct:   46 PQGPGCGLQNTGNSCYLNAALQCLTHTPPLADYMLSQEHSQTC-CSPEG-CKLCAMEALVTQSLLHSHSGDVMKPSHIL 122          

HSP 2 Score: 25.0238 bits (53), Expect = 6.683e-11
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 1
Query:  649 FSRYQQEDAHEF 684
            F ++QQEDAHEF
Sbjct:  126 FHKHQQEDAHEF 137          
The following BLAST results are available for this feature:
BLAST of FC921387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
UBP17_HUMAN2.246e-1241.89Ubiquitin carboxyl-terminal hydrolase 17 OS=Homo s... [more]
U17L5_HUMAN2.246e-1241.89Ubiquitin carboxyl-terminal hydrolase 17-like prot... [more]
U17L6_HUMAN2.265e-1241.89Ubiquitin carboxyl-terminal hydrolase 17-like prot... [more]
U17L2_HUMAN3.788e-1243.24Ubiquitin carboxyl-terminal hydrolase 17-like prot... [more]
UBPW_MOUSE6.683e-1141.77Ubiquitin carboxyl-terminal hydrolase DUB-1 OS=Mus... [more]

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Properties
Property NameValue
Genbank descriptionC32104D05EF RVDevelopN Citrus clementina cDNA clone C32104D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921387 ID=FC921387; Name=FC921387; organism=Citrus clementina; type=EST; length=707bp
GAACACAACAAAGACTCCCCAAAATTCAGATCCAACCCACAAAATCAAAT
ATTGCAAAAGACAACCGATCGATTACAATATTCTAATGGAGACCAACACC
TCCAAAACCCTAGATGACGAAACTGACCTTGTTTTTGCTCGCGAAATTGT
TGATGAAAAAACCCTAGATCCATCTTGGTCTTCACCCGAAACCCTATATG
ACCATCTCCATCCTTCAAATCACCCACTGACATTGACTGATCTCGATAAA
GATCAAAACAATGACGACGATGATGACTACGAAGAAATTTATAGGGATAC
GAGGCCTATCAGCAGTTCGTACGGACGATATAATTGGGGATCATCCTTGC
TCTCCCGCCCCGTGGAGAAGCACTGGCCTATTCAAATTAAACCTACTGGA
GTGGGTGCGGGGCTGGAGAATTTAGGAAACACATGCTTTATAAATGCTAT
TTTGCAATGCTTTACTCATACTCTGCCCCTTGTTCAAGCTCTTCGTTCTT
TTGATCATCCCAGGCCCTGCGATGGTGCTACTGAAGGGTTCTGTGTTATC
TGTGCTCTTAGAGATCACATTGAACTATCATTAGCTTCTTCAGGAAAAGT
TCTCTCTCCACGGAAACTTGTTGACAATTTGAACTATATTTCATCATTTT
TTCAAGGTATCAGCAAGAAGATGCTCATGAATTCCCCTGCATGCTGNTAG
ATAGACT
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