FC921388

Overview
NameFC921388
Unique NameFC921388
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921388 vs. ExPASy Swiss-Prot
Match: ERVC_TABDI (Ervatamin-C OS=Tabernaemontana divaricata PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.511e-17
Identity = 40/63 (63.49%), Postives = 47/63 (74.60%), Query Frame = 1
Query:  469 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLXTGKLVSLSEQQLVDCD---HEC 648
            LP   DWR+KGAV PVK+QGSCGSCW+FST   +E  N + TG L+SLSEQ+LVDCD   H C
Sbjct:    1 LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKKNHGC 63          
BLAST of FC921388 vs. ExPASy Swiss-Prot
Match: MEX1_JACME (Mexicain OS=Jacaratia mexicana PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.585e-17
Identity = 42/80 (52.50%), Postives = 53/80 (66.25%), Query Frame = 1
Query:  472 PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLXTGKLVSLSEQQLVDCD---HECD-----PEETGSCDSGMH 687
            P   DWREKGAV PVK+Q  CGSCW+FST   +EG N + TG+L+SLSEQ+L+DC+   H CD     P      D+G+H
Sbjct:    2 PESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCEYRSHGCDGGYQTPSLQYVVDNGVH 81          
BLAST of FC921388 vs. ExPASy Swiss-Prot
Match: CYSPL_SOLLC (Low-temperature-induced cysteine proteinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.585e-17
Identity = 40/74 (54.05%), Postives = 49/74 (66.22%), Query Frame = 1
Query:  463 NDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLXTGKLVSLSEQQLVDCDHECDPEETGSCDSGM 684
            + LP   DWREKG +  VKDQGSCGSCW+FS   A+E  N + TG L+SLSEQ+LVDCD   +      CD G+
Sbjct:   16 DSLPESIDWREKGVLVGVKDQGSCGSCWAFSAVAAMESINAIVTGNLISLSEQELVDCDRSYNE----GCDGGL 85          
BLAST of FC921388 vs. ExPASy Swiss-Prot
Match: CPGP1_ZINOF (Zingipain-1 OS=Zingiber officinale PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.822e-17
Identity = 40/64 (62.50%), Postives = 47/64 (73.44%), Query Frame = 1
Query:  469 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLXTGKLVSLSEQQLVDC---DHECD 651
            LP   DWREKGAV PVK+QG CGSCW+F    A+EG N + TG L+SLSEQQLVDC   +H C+
Sbjct:    3 LPDSIDWREKGAVVPVKNQGGCGSCWAFDAIAAVEGINQIVTGDLISLSEQQLVDCSTRNHGCE 66          
BLAST of FC921388 vs. ExPASy Swiss-Prot
Match: MEX2_JACME (Chymomexicain OS=Jacaratia mexicana PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.742e-16
Identity = 38/62 (61.29%), Postives = 46/62 (74.19%), Query Frame = 1
Query:  472 PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLXTGKLVSLSEQQLVDCD---HEC 648
            P   DWR+KGAV PVK+Q  CGSCW+FST   +EG N + TGKL+SLSEQ+L+DCD   H C
Sbjct:    2 PESIDWRDKGAVTPVKNQNPCGSCWAFSTVATVEGINKIRTGKLISLSEQELLDCDRRSHGC 63          
BLAST of FC921388 vs. ExPASy Swiss-Prot
Match: CATK_HUMAN (Cathepsin K OS=Homo sapiens GN=CTSK PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.742e-16
Identity = 55/151 (36.42%), Postives = 76/151 (50.33%), Query Frame = 1
Query:  214 HFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATH----GVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTND-LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLXTGKLVSLSEQQLVDCDHECD 651
            H+ L+KK   K Y ++ +   R  I++ NL+  +          H     +    D+T  E  +   GL+  L   +  D   I       P   D+R+KG V PVK+QG CGSCW+FS+ GALEG     TGKL++LS Q LVDC  E D
Sbjct:   25 HWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLGDMTSEEVVQKMTGLKVPLSHSRSNDTLYIPEWEGRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 175          
BLAST of FC921388 vs. ExPASy Swiss-Prot
Match: CATJ_RAT (Cathepsin J OS=Rattus norvegicus GN=Ctsj PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.742e-16
Identity = 50/141 (35.46%), Postives = 77/141 (54.61%), Query Frame = 1
Query:  226 FKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQ----FSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLXTGKLVSLSEQQLVDC 636
            +K K+ K+Y+  EE  +R  +++ NL+      K +    +G T     F+D T  EFR++   +     +   + Q  +  +  LP   DWR++G V PV++QG CGSCW+F+  GA+EG  F  TG L  LS Q L+DC
Sbjct:   32 WKTKYAKSYSPVEEELKR-AVWEENLKMIQLHNKENGLGKNGFTMEMNAFADTTGEEFRKSLSDILIPAAVTNPSAQKQV--SIGLPNFKDWRKEGYVTPVRNQGKCGSCWAFAAVGAIEGQMFSKTGNLTPLSVQNLLDC 169          
BLAST of FC921388 vs. ExPASy Swiss-Prot
Match: CATL1_SHEEP (Cathepsin L1 OS=Ovis aries GN=CTSL PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.972e-16
Identity = 41/72 (56.94%), Postives = 48/72 (66.67%), Query Frame = 1
Query:  469 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLXTGKLVSLSEQQLVDCDHECDPEETGSCDSGM 684
            +P   DW +KG V PVK+QG CGSCW+FS TGALEG  F  TGKLVSLSEQ LVD      P+    C+ G+
Sbjct:    1 VPKSVDWTKKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDSSR---PQGNQGCNGGL 69          
BLAST of FC921388 vs. ExPASy Swiss-Prot
Match: CATJ_MOUSE (Cathepsin J OS=Mus musculus GN=Ctsj PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.972e-16
Identity = 51/141 (36.17%), Postives = 76/141 (53.90%), Query Frame = 1
Query:  226 FKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVT----QFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLXTGKLVSLSEQQLVDC 636
            +K K+ K+Y+ +EE  RR  +++ N+R      K +    +  T    +F D T  EFR++   +     +     Q  +  +  LP   DWRE+G V PV++QG CGSCW+F+  GA+EG  F  TG L  LS Q L+DC
Sbjct:   32 WKTKYAKSYSPKEEALRR-AVWEENMRMIKLHNKENSLGKNNFTMKMNKFGDQTSEEFRKSIDNIPIPAAMTDPHAQNHV--SIGLPDYKDWREEGYVTPVRNQGKCGSCWAFAAAGAIEGQMFWKTGNLTPLSVQNLLDC 169          
BLAST of FC921388 vs. ExPASy Swiss-Prot
Match: CATL1_PARTE (Cathepsin L 1 OS=Paramecium tetraurelia GN=GSPATT00020990001 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.882e-16
Identity = 56/169 (33.14%), Postives = 86/169 (50.89%), Query Frame = 1
Query:  190 NDLLGAEHHFSLFKKKFNKAYASQEEHDRRFTIFKANLR--RAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDAD-QAPILPTNDLPADFDWREKGAVG--PVKDQGSCGSCWSFSTTGALEGANFLXTGKLVSLSEQQLVDCDHECDPEETGSCDSG 681
            +D +   + ++ +K K+N+ Y +Q +   R+ +F  NL   RA      + + T  + QF+D++  EF +TYL L+    +P+ A   A         A+ DW +   V    VK+QGSCGSCW+FS  GALE    +   +   LSEQ LVDC     P +   C+ G
Sbjct:   17 SDEIDTANLYANWKMKYNRRYTNQRDEMYRYKVFTDNLNYIRAFYESPEEATFTLELNQFADMSQQEFAQTYLSLK----VPRTAKLNAANSNFQYKGAEVDWTDNKKVKYPAVKNQGSCGSCWAFSAVGALEINTDIELNRKYELSEQDLVDCS---GPYDNDGCNGG 178          
The following BLAST results are available for this feature:
BLAST of FC921388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
ERVC_TABDI3.511e-1763.49Ervatamin-C OS=Tabernaemontana divaricata PE=1 SV=... [more]
MEX1_JACME4.585e-1752.50Mexicain OS=Jacaratia mexicana PE=1 SV=1[more]
CYSPL_SOLLC4.585e-1754.05Low-temperature-induced cysteine proteinase (Fragm... [more]
CPGP1_ZINOF7.822e-1762.50Zingipain-1 OS=Zingiber officinale PE=1 SV=1[more]
MEX2_JACME1.742e-1661.29Chymomexicain OS=Jacaratia mexicana PE=1 SV=1[more]
CATK_HUMAN1.742e-1636.42Cathepsin K OS=Homo sapiens GN=CTSK PE=1 SV=1[more]
CATJ_RAT1.742e-1635.46Cathepsin J OS=Rattus norvegicus GN=Ctsj PE=2 SV=2[more]
CATL1_SHEEP2.972e-1656.94Cathepsin L1 OS=Ovis aries GN=CTSL PE=1 SV=1[more]
CATJ_MOUSE2.972e-1636.17Cathepsin J OS=Mus musculus GN=Ctsj PE=2 SV=2[more]
CATL1_PARTE3.882e-1633.14Cathepsin L 1 OS=Paramecium tetraurelia GN=GSPATT0... [more]

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Properties
Property NameValue
Genbank descriptionC32104D06EF RVDevelopN Citrus clementina cDNA clone C32104D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921388 ID=FC921388; Name=FC921388; organism=Citrus clementina; type=EST; length=696bp
GAACGAACGCTTCTATTGATATCAGCATTGTCTAAAAGCATGGGATCTAA
AACAGTAGTTTTCTTTCTGGTCTCTCTCGTCGTCGTCTCCGCCGTTTCAT
CAGGGACGTTGATCGACGATGTTGATCAGCTGATCAGGCAAGTAACGGAC
GGCGGTGACGAGATCCTAAGCCACCACGAGAGCACCAACAACGACCTCTT
GGGCGCAGAGCACCACTTCTCCCTATTCAAGAAGAAGTTCAATAAAGCGT
ACGCTTCGCAGGAGGAGCACGACCGTAGGTTCACTATTTTCAAGGCCAAC
TTGCGACGCGCCGCGCGTCGCCAGAAGCTCGACCCGAGCGCCACCCACGG
CGTCACTCAGTTCTCCGACTTGACTCCGGCCGAGTTCCGCCGGACGTACC
TTGGCCTCAGGAGGAAGCTGAGGCTGCCTAAGGATGCGGATCAGGCGCCG
ATCTTGCCTACGAATGATTTGCCGGCGGATTTTGATTGGAGAGAGAAGGG
CGCTGTAGGCCCTGTTAAAGATCAGGGTTCATGCGGATCATGCTGGAGTT
TCAGTACAACAGGGGCCTTGGAAGGTGCTAACTTCCTGGNCACTGGAAAG
CTTGTGAGCCTCAGTGAGCAACAGCTTGTGGATTGCGATCATGAGTGTGA
TCCTGAGGAAACAGGTTCTTGTGATTCTGGGATGCATGGTGGGCTT
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