FC921388

Overview
NameFC921388
Unique NameFC921388
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921388 vs. ExPASy Swiss-Prot
Match: CATV_NPVCD (Viral cathepsin OS=Choristoneura fumiferana defective polyhedrosis virus GN=Vcath PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.873e-24
Identity = 65/169 (38.46%), Postives = 90/169 (53.25%), Query Frame = 1
Query:  193 DLLGAEHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPI-LPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLXTGKLVSLSEQQLVDCDHECDPEETGSCDSGMHGGL 696
            DLL A  +F  F   FNK Y+S+ E   RF IF+ NL     +   D SA + + +FSDL+  E    Y GL   L+     +   +  P +  P +FDWR    V  VK+QG+CG+CW+F+T G+LE    +   +L++LSEQQL+DCD           D G  GGL
Sbjct:   20 DLLKAPSYFEDFLHNFNKNYSSKSEKLHRFKIFQHNLEEIINKNLNDTSAQYEINKFSDLSKDETISKYTGLSLPLQNQNFCEVVVLNRPPDKGPLEFDWRRLNKVTSVKNQGTCGACWAFATLGSLESQFAIKHDQLINLSEQQLIDCDF---------VDMGCDGGL 179          
BLAST of FC921388 vs. ExPASy Swiss-Prot
Match: ALEU_HORVU (Thiol protease aleurain OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.873e-24
Identity = 76/191 (39.79%), Postives = 95/191 (49.74%), Query Frame = 1
Query:  133 IRQVTDGGDEILSHHESTNNDLLGAEHH---FSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLXTGKLVSLSEQQLVDCDHECDPEETGSCDSGMHGGL 696
            IR VTD     L   ES     LG   H   F+ F  ++ K+Y S  E  RRF IF  +L       +       G+ +FSD++  EF+ T LG  +        +   +     LP   DWRE G V PVK+Q  CGSCW+FSTTGALE A    TGK +SLSEQQLVDC         G  + G +GGL
Sbjct:   33 IRPVTDRAASTL---ESAVLGALGRTRHALRFARFAVRYGKSYESAAEVRRRFRIFSESLEEVRSTNRKGLPYRLGINRFSDMSWEEFQATRLGAAQTCSATLAGNHL-MRDAAALPETKDWREDGIVSPVKNQAHCGSCWTFSTTGALEAAYTQATGKNISLSEQQLVDC-------AGGFNNFGCNGGL 212          
BLAST of FC921388 vs. ExPASy Swiss-Prot
Match: CYSP1_LEIPI (Cysteine proteinase 1 OS=Leishmania pifanoi GN=CYS1 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 6.606e-24
Identity = 68/168 (40.48%), Postives = 89/168 (52.98%), Query Frame = 1
Query:  205 AEHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVT-QFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPA---DFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLXTGKLVSLSEQQLVDCDHECDPEETGSCDSGMHGGL 696
            A  H+  FKK+  KA+    E   RF  FK N++ A      +P A + V+ +F+DLTP EF + YL      R  KD  +  +   +  P+     DWR+KGAV PVK+QG CGSCW+FS  G +EG        LVSLSEQ LV CD         + D G +GGL
Sbjct:   38 ASAHYGSFKKRHGKAFGGDAEEGHRFNAFKQNMQTAYFLNTQNPHAHYDVSGKFADLTPQEFAKLYLNPDYYARHLKDHKE-DVHVDDSAPSGVMSVDWRDKGAVTPVKNQGLCGSCWAFSAIGNIEGQWAASGHSLVSLSEQMLVSCD---------NIDEGCNGGL 195          
BLAST of FC921388 vs. ExPASy Swiss-Prot
Match: CATL1_MOUSE (Cathepsin L1 OS=Mus musculus GN=Ctsl1 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 6.606e-24
Identity = 65/161 (40.37%), Postives = 85/161 (52.80%), Query Frame = 1
Query:  226 FKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQ----FSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLXTGKLVSLSEQQLVDCDHECDPEETGSCDSGMHGGL 696
            +K    + Y + EE  RR  I++ N+R          +  HG +     F D+T  EFR+   G R +        Q P++    +P   DWREKG V PVK+QG CGSCW+FS +G LEG  FL TGKL+SLSEQ LVDC H          + G +GGL
Sbjct:   32 WKSTHRRLYGTNEEEWRR-AIWEKNMRMIQLHNGEYSNGQHGFSMEMNAFGDMTNEEFRQVVNGYRHQKHKKGRLFQEPLMLK--IPKSVDWREKGCVTPVKNQGQCGSCWAFSASGCLEGQMFLKTGKLISLSEQNLVDCSH-------AQGNQGCNGGL 182          
BLAST of FC921388 vs. ExPASy Swiss-Prot
Match: PAPA2_CARPA (Chymopapain OS=Carica papaya PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.127e-23
Identity = 64/158 (40.51%), Postives = 85/158 (53.80%), Query Frame = 1
Query:  184 TNNDLLGAEHHFSLFKK---KFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPK---DADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLXTGKLVSLSEQQLVDCD 639
            + +DL   E    LF     K NK Y S +E   RF IF+ NL       K + S   G+  F+DL+  EF++ Y+G   +        D +        + P   DWR KGAV PVK+QG+CGSCW+FST   +EG N + TG L+ LSEQ+LVDCD
Sbjct:   34 SQDDLTSIERLIQLFDSWMLKHNKIYESIDEKIYRFEIFRDNLMYIDETNKKNNSYWLGLNGFADLSNDEFKKKYVGFVAEDFTGLEHFDNEDFTYKHVTNYPQSIDWRAKGAVTPVKNQGACGSCWAFSTIATVEGINKIVTGNLLELSEQELVDCD 191          
BLAST of FC921388 vs. ExPASy Swiss-Prot
Match: CYSP_HEMSP (Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN102 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.127e-23
Identity = 70/180 (38.89%), Postives = 95/180 (52.78%), Query Frame = 1
Query:  184 TNNDLLGAEHHFSLFKK--KFNKAYASQEEHDRRFTIFKANLRRAAR-RQKLDPSATHGVTQFSDLTPAEFRRTYLGL-----RRKLRLPKDADQAPILPTNDLPA-DFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLXTGKLVSLSEQQLVDCDHECDPEETGSCDSGMHGGL 696
            T  DL   +  ++L++K    +      +E +RRF +FK N++      QK D      + +F D+T  EFR  Y G      R +  + K+           LPA   DWR KGAV  VKDQG CGSCW+FST  ++EG N + TG+LVSLSEQ+LVDCD         S + G +GGL
Sbjct:   26 TEKDLASEDSLWNLYEKWRTHHTVARDLDEKNRRFNVFKENVKFIHEFNQKKDAPYKLALNKFGDMTNQEFRSKYAGSKIQHHRSQRGIQKNTGSFMYENVGSLPAASIDWRAKGAVTGVKDQGQCGSCWAFSTIASVEGINQIKTGELVSLSEQELVDCD--------TSYNEGCNGGL 197          
BLAST of FC921388 vs. ExPASy Swiss-Prot
Match: CYSP2_HOMAM (Digestive cysteine proteinase 2 OS=Homarus americanus GN=LCP2 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.127e-23
Identity = 65/166 (39.16%), Postives = 84/166 (50.60%), Query Frame = 1
Query:  196 LLGAEHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKL----DPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLXTGKLVSLSEQQLVDCDHECDPEETGSCDSG 681
            L  A   +  FK K+ + Y   EE   R  IF+ N +      K     + +    + +F D+T  EF     G   +   P      P   T     + DWR KGAV PVKDQG CGSCW+FSTTG+LEG +FL TG L+SL+EQQLVDC     P+    C+ G
Sbjct:   13 LAAASPSWEHFKGKYGRQYVDAEEDSYRRVIFEQNQKYIEEFNKKYENGEVTFNLAMNKFGDMTLEEFNAVMKGNIPRRSAPVSVFY-PKKETGPQATEVDWRTKGAVTPVKDQGQCGSCWAFSTTGSLEGQHFLKTGSLISLAEQQLVDCSRPYGPQ---GCNGG 174          
BLAST of FC921388 vs. ExPASy Swiss-Prot
Match: ACTN_ACTDE (Actinidain OS=Actinidia deliciosa PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.127e-23
Identity = 62/150 (41.33%), Postives = 81/150 (54.00%), Query Frame = 1
Query:  235 KFNKAYASQEEHDRRFTIFKANLRRAARRQK-LDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLXTGKLVSLSEQQLVDCDHECDPEETGSCDSG 681
            K+ K+Y S  E +RRF IFK  LR         + S   G+ QF+DLT  EFR TYLG        K +++        LP+  DWR  GAV  +K QG CG CW+FS    +EG N + TG L+SLSEQ+L+DC      + T  C+ G
Sbjct:   48 KYGKSYNSLGEWERRFEIFKETLRFIDEHNADTNRSYKVGLNQFADLTDEEFRSTYLGFTSGSNKTKVSNRYEPRVGQVLPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGR---TQNTRGCNGG 194          
BLAST of FC921388 vs. ExPASy Swiss-Prot
Match: CATL1_CERAE (Cathepsin L1 OS=Cercopithecus aethiops GN=CTSL1 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.472e-23
Identity = 64/163 (39.26%), Postives = 85/163 (52.15%), Query Frame = 1
Query:  208 EHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQ----FSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLXTGKLVSLSEQQLVDCDHECDPEETGSCDSGM 684
            E  ++ +K   N+ Y   EE  RR  +++ N++      +      H  T     F D+T  EFR+   G + +        Q P+    + P   DWREKG V PVK+QG CGSCW+FS TGALEG  F  TGKLVSLSEQ LVDC     P+    C+ G+
Sbjct:   26 EAQWTKWKAMHNRLYGMNEEGWRR-AVWEKNMKMIELHNQEYSQGKHSFTMAMNTFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLF--YEAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCS---GPQGNEGCNGGL 182          
BLAST of FC921388 vs. ExPASy Swiss-Prot
Match: LMCPA_LEIME (Cysteine proteinase A OS=Leishmania mexicana GN=LMCPA PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.922e-23
Identity = 67/169 (39.64%), Postives = 87/169 (51.48%), Query Frame = 1
Query:  205 AEHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVT-QFSDLTPAEFRRTYLG----LRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLXTGKLVSLSEQQLVDCDHECDPEETGSCDSGMHGGL 696
            A  H+  FKK+  KA+    E   RF  FK N++ A      +P A + V+ +F+DLTP EF + YL      R      +D       P+  +  D  WR+KGAV PVK+QG CGSCW+FS  G +EG        LVSLSEQ LV CD         + D G +GGL
Sbjct:   38 ASAHYGSFKKRHGKAFGGDAEEGHRFNAFKQNMQTAYFLNTQNPHAHYDVSGKFADLTPQEFAKLYLNPDYYARHLKNHKEDVHVDDSAPSGVMSVD--WRDKGAVTPVKNQGLCGSCWAFSAIGNIEGQWAASGHSLVSLSEQMLVSCD---------NIDEGCNGGL 195          
The following BLAST results are available for this feature:
BLAST of FC921388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CATV_NPVCD3.873e-2438.46Viral cathepsin OS=Choristoneura fumiferana defect... [more]
ALEU_HORVU3.873e-2439.79Thiol protease aleurain OS=Hordeum vulgare PE=2 SV... [more]
CYSP1_LEIPI6.606e-2440.48Cysteine proteinase 1 OS=Leishmania pifanoi GN=CYS... [more]
CATL1_MOUSE6.606e-2440.37Cathepsin L1 OS=Mus musculus GN=Ctsl1 PE=1 SV=2[more]
PAPA2_CARPA1.127e-2340.51Chymopapain OS=Carica papaya PE=1 SV=2[more]
CYSP_HEMSP1.127e-2338.89Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN10... [more]
CYSP2_HOMAM1.127e-2339.16Digestive cysteine proteinase 2 OS=Homarus america... [more]
ACTN_ACTDE1.127e-2341.33Actinidain OS=Actinidia deliciosa PE=1 SV=1[more]
CATL1_CERAE1.472e-2339.26Cathepsin L1 OS=Cercopithecus aethiops GN=CTSL1 PE... [more]
LMCPA_LEIME1.922e-2339.64Cysteine proteinase A OS=Leishmania mexicana GN=LM... [more]

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Properties
Property NameValue
Genbank descriptionC32104D06EF RVDevelopN Citrus clementina cDNA clone C32104D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921388 ID=FC921388; Name=FC921388; organism=Citrus clementina; type=EST; length=696bp
GAACGAACGCTTCTATTGATATCAGCATTGTCTAAAAGCATGGGATCTAA
AACAGTAGTTTTCTTTCTGGTCTCTCTCGTCGTCGTCTCCGCCGTTTCAT
CAGGGACGTTGATCGACGATGTTGATCAGCTGATCAGGCAAGTAACGGAC
GGCGGTGACGAGATCCTAAGCCACCACGAGAGCACCAACAACGACCTCTT
GGGCGCAGAGCACCACTTCTCCCTATTCAAGAAGAAGTTCAATAAAGCGT
ACGCTTCGCAGGAGGAGCACGACCGTAGGTTCACTATTTTCAAGGCCAAC
TTGCGACGCGCCGCGCGTCGCCAGAAGCTCGACCCGAGCGCCACCCACGG
CGTCACTCAGTTCTCCGACTTGACTCCGGCCGAGTTCCGCCGGACGTACC
TTGGCCTCAGGAGGAAGCTGAGGCTGCCTAAGGATGCGGATCAGGCGCCG
ATCTTGCCTACGAATGATTTGCCGGCGGATTTTGATTGGAGAGAGAAGGG
CGCTGTAGGCCCTGTTAAAGATCAGGGTTCATGCGGATCATGCTGGAGTT
TCAGTACAACAGGGGCCTTGGAAGGTGCTAACTTCCTGGNCACTGGAAAG
CTTGTGAGCCTCAGTGAGCAACAGCTTGTGGATTGCGATCATGAGTGTGA
TCCTGAGGAAACAGGTTCTTGTGATTCTGGGATGCATGGTGGGCTT
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