FC921389

Overview
NameFC921389
Unique NameFC921389
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921389 vs. ExPASy Swiss-Prot
Match: RPN8_ASHGO (26S proteasome regulatory subunit RPN8 OS=Ashbya gossypii GN=RPN8 PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.402e-56
Identity = 109/216 (50.46%), Postives = 155/216 (71.76%), Query Frame = 3
Query:   60 EKVIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHSYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVP-NPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYLDLXIDEKLP 704
            E+V V PLVLLS++D+Y R+     KR VGVLLG +   T+ V+NS+A+PFEED+K+P +WFLDH+Y E+M  M K+INAKE ++GWY +GPKLR +DL I+ LF  Y   N +L+I+DV+ + +G+PT AY  +EEVK++ +  +++ FVH+P+ I A E EEIGVEHLLRDV+D     L+  +T +L +L+GL  +LR+I  YLD     +LP
Sbjct:    6 EQVNVAPLVLLSVLDHYKRMNTPDNKRCVGVLLGDNSGSTIKVTNSFALPFEEDEKNPDVWFLDHNYIENMNDMCKKINAKEKMIGWYHSGPKLRSSDLKINGLFKKYTQGNSLLLIVDVKQQGVGLPTDAYMAIEEVKDDGS-STERTFVHLPTAIEAEEAEEIGVEHLLRDVRDQAAGNLSLRLTNQLKSLQGLQRKLRDIVAYLDKVNSGQLP 220          
BLAST of FC921389 vs. ExPASy Swiss-Prot
Match: EIF3F_ARATH (Eukaryotic translation initiation factor 3 subunit F OS=Arabidopsis thaliana GN=TIF3F1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.114e-20
Identity = 63/207 (30.43%), Postives = 105/207 (50.72%), Query Frame = 3
Query:   72 VHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFK-GTVDVSNSYAVPFEEDDKDPGIWFLDHSYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVH---VPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYLD 680
            +HPLV+ ++ D + R   D+ +RV+G LLGS    GTVD+ NSYAVP  E      +   D  YH +M +   ++N+KE +VGWYSTG  +      IH  +   VPNP+ + +D          KA+     V  N +   +++  H   +P ++   + E +G + L    K T++  L N++ G    ++ L   + ++  Y+D
Sbjct:   30 IHPLVIFNVCDCFVR-RPDSAERVIGTLLGSILPDGTVDIRNSYAVPHNESSDQVAV---DIDYHHNMLASHLKVNSKETIVGWYSTGAGVNGGSSLIHDFYAREVPNPIHLTVDTGFTNGEGTIKAF-----VSSNLSLGDRQLVAHFQEIPVDLRMVDAERVGFDVL----KATSVDKLPNDLEGMELTMERLLTLINDVYKYVD 223          
BLAST of FC921389 vs. ExPASy Swiss-Prot
Match: EIF3F_PANTR (Eukaryotic translation initiation factor 3 subunit F OS=Pan troglodytes GN=EIF3F PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.978e-18
Identity = 50/169 (29.59%), Postives = 96/169 (56.80%), Query Frame = 3
Query:   66 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHSYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLR 572
            V +HP++L SIVD+Y R   +   RV+G LLG+  K +V+V+N ++VP  E + +  +   D  + ++MY + K+++  E ++GWY+TG  + E+ + IH+ +    PNP+ + +D   +   +  KAY  V  +     +    +F  +  + A ++ E IGV+ +++
Sbjct:   96 VRLHPVILASIVDSYER-RNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAV---DMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRMSIKAY--VSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMK 258          
BLAST of FC921389 vs. ExPASy Swiss-Prot
Match: EIF3F_MACFA (Eukaryotic translation initiation factor 3 subunit F OS=Macaca fascicularis GN=EIF3F PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.978e-18
Identity = 50/169 (29.59%), Postives = 96/169 (56.80%), Query Frame = 3
Query:   66 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHSYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLR 572
            V +HP++L SIVD+Y R   +   RV+G LLG+  K +V+V+N ++VP  E + +  +   D  + ++MY + K+++  E ++GWY+TG  + E+ + IH+ +    PNP+ + +D   +   +  KAY  V  +     +    +F  +  + A ++ E IGV+ +++
Sbjct:   96 VRLHPVILASIVDSYER-RNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAV---DMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRMSIKAY--VSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMK 258          
BLAST of FC921389 vs. ExPASy Swiss-Prot
Match: EIF3F_HUMAN (Eukaryotic translation initiation factor 3 subunit F OS=Homo sapiens GN=EIF3F PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.978e-18
Identity = 50/169 (29.59%), Postives = 96/169 (56.80%), Query Frame = 3
Query:   66 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHSYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLR 572
            V +HP++L SIVD+Y R   +   RV+G LLG+  K +V+V+N ++VP  E + +  +   D  + ++MY + K+++  E ++GWY+TG  + E+ + IH+ +    PNP+ + +D   +   +  KAY  V  +     +    +F  +  + A ++ E IGV+ +++
Sbjct:   92 VRLHPVILASIVDSYER-RNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAV---DMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRMSIKAY--VSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMK 254          
BLAST of FC921389 vs. ExPASy Swiss-Prot
Match: EI3F1_DROMO (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila mojavensis GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.978e-18
Identity = 56/171 (32.75%), Postives = 94/171 (54.97%), Query Frame = 3
Query:   66 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHSYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDV 578
            V VHP+VL  +VD + R   D+  RV+G LLGS  KG V+V+N + VP +E D        + SY   MY + +++NA E+VVGW++TG ++  +   IH+ +     NPV + +D   +   +  +AY  ++        K+  +F  +P E+ ++E E  G++ L + V
Sbjct:    8 VRVHPVVLFQVVDAFERRNADSH-RVIGTLLGSVDKGVVEVTNCFCVPHKEHDDQVEA---ELSYALDMYDLNRKVNANENVVGWWATGNEVTNHSSVIHEYYARECNNPVHLTVDTSLQSGRMGLRAYICIQLGVPGG--KTGCMFTPIPVELTSYEPETFGLKLLQKTV 172          
BLAST of FC921389 vs. ExPASy Swiss-Prot
Match: EI3F1_DROWI (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila willistoni GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.584e-18
Identity = 57/171 (33.33%), Postives = 93/171 (54.39%), Query Frame = 3
Query:   66 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHSYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDV 578
            V VHP+VL  +VD + R   D+  RV+G LLGS  KG V+V+N + VP +E D        + SY   MY + +++N+ E VVGW++TG ++  +   IH+ +     NPV V +D   +   +  +AY  ++        KS  +F  +P E+ ++E E  G++ L + V
Sbjct:    8 VRVHPVVLFQVVDAFERRNADSH-RVIGTLLGSVDKGVVEVTNCFCVPHKEHDDQVEA---ELSYALDMYELNRKVNSNESVVGWWATGNEVTNHSSVIHEYYARECNNPVHVTVDTSLQGGRMGLRAYVCIQLGVPGG--KSGCMFTPIPVELTSYEPETFGLKLLQKTV 172          
BLAST of FC921389 vs. ExPASy Swiss-Prot
Match: EIF3F_MOUSE (Eukaryotic translation initiation factor 3 subunit F OS=Mus musculus GN=Eif3f PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.757e-18
Identity = 50/169 (29.59%), Postives = 96/169 (56.80%), Query Frame = 3
Query:   66 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHSYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLR 572
            V +HP++L SIVD+Y R   +   RV+G LLG+  K +V+V+N ++VP  E + +  +   D  + ++MY + K+++  E ++GWY+TG  + E+ + IH+ +    PNP+ + +D   +   +  KAY  V  +     +    +F  +  + A ++ E IGV+ +++
Sbjct:   96 VRLHPVILASIVDSYER-RNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAV---DMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSRESPNPIHLTVDTGLQHGRMSIKAY--VSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMK 258          
BLAST of FC921389 vs. ExPASy Swiss-Prot
Match: EI3F1_DROVI (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila virilis GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.757e-18
Identity = 56/171 (32.75%), Postives = 93/171 (54.39%), Query Frame = 3
Query:   66 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHSYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDV 578
            V VHP+VL  +VD + R   D+  RV+G LLGS  KG V+V+N + VP +E D        + SY   MY + +++NA E VVGW++TG ++  +   IH+ +     NPV + +D   +   +  +AY  ++        K+  +F  +P E+ ++E E  G++ L + V
Sbjct:    8 VRVHPVVLFQVVDAFERRNADSH-RVIGTLLGSVDKGVVEVTNCFCVPHKEHDDQVEA---ELSYALDMYDLNRKVNANESVVGWWATGNEVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRAYVCIQLGVPGG--KTGCMFTPIPVELTSYEPETFGLKLLQKTV 172          
BLAST of FC921389 vs. ExPASy Swiss-Prot
Match: EI3F1_DROAN (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila ananassae GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.757e-18
Identity = 57/171 (33.33%), Postives = 91/171 (53.22%), Query Frame = 3
Query:   66 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHSYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDV 578
            V VHP+VL  +VD Y R   D+  RV+G LLGS  KG V+V+N + VP +E D        + SY   MY + +++N  E VVGW++TG  +  +   IH+ +     NPV + +D   +   +  +AY  ++        KS  +F  +P E+ ++E E  G++ L + V
Sbjct:    8 VRVHPVVLFQVVDAYERRNADSH-RVIGTLLGSVDKGVVEVTNCFCVPHKEHDDQVEA---ELSYALDMYDLNRKVNPNESVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRAYVCIQLGVPGG--KSGCMFTPIPVELTSYEPETFGLKLLQKTV 172          
The following BLAST results are available for this feature:
BLAST of FC921389 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
RPN8_ASHGO1.402e-5650.4626S proteasome regulatory subunit RPN8 OS=Ashbya g... [more]
EIF3F_ARATH2.114e-2030.43Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_PANTR1.978e-1829.59Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_MACFA1.978e-1829.59Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_HUMAN1.978e-1829.59Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROMO1.978e-1832.75Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROWI2.584e-1833.33Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_MOUSE5.757e-1829.59Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROVI5.757e-1832.75Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROAN5.757e-1833.33Eukaryotic translation initiation factor 3 subunit... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32104D07EF RVDevelopN Citrus clementina cDNA clone C32104D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921389 ID=FC921389; Name=FC921389; organism=Citrus clementina; type=EST; length=725bp
GACAGAGAGATTCGAATATGGACGTGATAAAGACGCAGCAAATTTCATCG
AGACCCATAGAGAAGGTCATAGTTCACCCGCTCGTCTTACTAAGCATCGT
CGACAATTACAACCGCGTCGCCAAGGACACGCGCAAGCGCGTCGTCGGCG
TCCTCCTCGGTAGCTCCTTCAAAGGCACCGTCGATGTCTCCAACAGCTAC
GCAGTGCCTTTTGAGGAAGATGACAAAGACCCAGGAATATGGTTTCTCGA
CCACAGCTACCATGAATCAATGTATTCAATGTTCAAAAGAATCAATGCCA
AGGAGCATGTCGTAGGTTGGTACAGTACAGGACCCAAGCTACGAGAGAAT
GATCTTGACATTCACCAATTATTTCACAACTATGTCCCAAATCCTGTATT
GGTCATTATTGATGTCCAACCAAAGGAGCTTGGAATACCCACCAAGGCTT
ACTATGATGTTGAGGAGGTTAAAGAGAATGCTACTCAGAAAAGCCAAAAG
GTCTTTGTACACGTGCCATCAGAAATTGCCGCTCATGAAGTCGAAGAAAT
CGGAGTGGAGCACTTGCTAAGGGACGTGAAAGACACCACCATCAGTACAC
TTGCAAATGAGGTCACTGGAAAACTTACAGCCCTAAAGGGTCTGGATGCT
CGTTTGCGTGAGATCCGTGGTTACCTTGACCTTGNTATTGATGAGAAACT
CCCGTTGATCACGAGATACTTTACC
back to top