FC921389

Overview
NameFC921389
Unique NameFC921389
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921389 vs. ExPASy Swiss-Prot
Match: EI3F1_DROPS (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila pseudoobscura pseudoobscura GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.852e-16
Identity = 53/171 (30.99%), Postives = 92/171 (53.80%), Query Frame = 3
Query:   66 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHSYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDV 578
            V VHP+VL  +VD + R   ++  RV+G LLGS  KG V+V+N + VP +E D        + SY   MY + +++N+ E VVGW++TG  +  +   IH+ +     NPV + +D   +   +  ++Y  ++        K+  +F  +P E+ ++E E  G++ L + V
Sbjct:    8 VRVHPVVLFQVVDAFERRNAESH-RVIGTLLGSVEKGVVEVTNCFCVPHKEHDDQVEA---ELSYALDMYDLNRKVNSNEAVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRSYVCIQLGVPGG--KTGCMFTPIPVELTSYEPETFGLKLLQKTV 172          
BLAST of FC921389 vs. ExPASy Swiss-Prot
Match: EI3F1_DROPE (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila persimilis GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.852e-16
Identity = 53/171 (30.99%), Postives = 92/171 (53.80%), Query Frame = 3
Query:   66 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHSYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDV 578
            V VHP+VL  +VD + R   ++  RV+G LLGS  KG V+V+N + VP +E D        + SY   MY + +++N+ E VVGW++TG  +  +   IH+ +     NPV + +D   +   +  ++Y  ++        K+  +F  +P E+ ++E E  G++ L + V
Sbjct:    8 VRVHPVVLFQVVDAFERRNAESH-RVIGTLLGSVEKGVVEVTNCFCVPHKEHDDQVEA---ELSYALDMYDLNRKVNSNEAVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRSYVCIQLGVPGG--KTGCMFTPIPVELTSYEPETFGLKLLQKTV 172          
BLAST of FC921389 vs. ExPASy Swiss-Prot
Match: CSN6B_ARATH (COP9 signalosome complex subunit 6b OS=Arabidopsis thaliana GN=CSN6B PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.568e-15
Identity = 63/223 (28.25%), Postives = 106/223 (47.53%), Query Frame = 3
Query:   72 VHPLVLLSIVDNYNRVAKDTRK----------------------RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHSYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIID--VQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHL--LRDVKDTTIST-LANEVTGKLTALKGLDARLR 659
            +HPLV+L+I D++ RV                            RV G ++G     TV++ NS+ + F     DP +  LD S+ E    ++K++    +V+GWYSTG    E+D+ IH+   +   +PV V+++  +   +  +P   Y     V +      Q +FVH    I   E E I V+H+  L+     + +T LA  +TG  +A+K L++R+R
Sbjct:   13 LHPLVMLNISDHFTRVKTQLNPPAASCATGNGSNNADAMLLQNPRVYGCVIGLQRGRTVEIFNSFELIF-----DPALDTLDRSFLEKKQELYKKVFPDFYVLGWYSTGSDATESDMHIHKALMDINESPVYVLLNPAINHAQKDLPVTIYESEFHVIDGI---PQSIFVHTSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIR 227          
BLAST of FC921389 vs. ExPASy Swiss-Prot
Match: EIF3F_DICDI (Eukaryotic translation initiation factor 3 subunit F OS=Dictyostelium discoideum GN=eif3f PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.957e-15
Identity = 56/211 (26.54%), Postives = 102/211 (48.34%), Query Frame = 3
Query:   66 VIVHPLVLLSIVDNYNR--VAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHSYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPN--PVLVIID--VQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYLD 680
            V VHP+V+ +I+D+Y R  V +D   RV+G LLG +  G +++ N + V   E ++      ++  Y   M  +  + + +E ++GWY+TG  + EN + I+  + + + N  P+ + +D  +    +GI     Y    +  N        F  +P EI   E E  G+E + +   D   ++L +E+     +L  LD  L  I  Y++
Sbjct:   15 VKVHPVVIFNILDHYIRRNVGQD---RVIGTLLGFNNDGVLEIRNCFPVVHSETEQIA----VEMEYQRKMLDLHLKSSPREPIIGWYATGNDINENSVHINNFYRDEMGNSTPIHLTVDTGLTNDTMGIHA---YMAHNLSLNPESSLGSYFSQLPLEILTFEAENAGLESIAQTKYDQQSTSLLSELESLQGSLTKLDEMLESITSYIE 215          
BLAST of FC921389 vs. ExPASy Swiss-Prot
Match: EIF3F_BOMMO (Eukaryotic translation initiation factor 3 subunit F OS=Bombyx mori GN=eIF3-S5 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.957e-15
Identity = 58/209 (27.75%), Postives = 102/209 (48.80%), Query Frame = 3
Query:   66 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHSYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDV----KDTTISTLANEVTGKLTALKGLDARLREIRGYLD 680
            V VHP+VL  IVD Y R   D+  RV+G L G+S KG V+V+N + VP +E          + +Y   +Y + +R+N+ E +VGW++TG ++  +   IH+ +      PV V +D       +  +AY  V     N  Q    +F  V   +  +E E +G++   + V    + ++     +++   ++A   L++ L +   Y D
Sbjct:    7 VKVHPVVLFQIVDAYERRNADSH-RVIGTLWGTSDKGVVEVTNCFCVPHKEHADQVEA---ELNYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGRMGLRAYVCVPLGVPNGKQGC--MFTPVDVTLTCYEPEIVGLQVCQKTVSGGGRGSSGVAAGSDLAQVMSAASSLESLLEQALQYAD 209          
BLAST of FC921389 vs. ExPASy Swiss-Prot
Match: CSN6_DICDI (COP9 signalosome complex subunit 6 OS=Dictyostelium discoideum GN=csn6 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.016e-14
Identity = 58/220 (26.36%), Postives = 107/220 (48.64%), Query Frame = 3
Query:   63 KVIVHPLVLLSIVDNYNRVAKDTRK----RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHSYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDV-QPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLR-DVKDTTISTLANEVTGKLTALKGLDARLREIRGYLDLXIDEKLP 704
            +V +HPLVL++I D++ R    +      RV+GV+LG      V++ NS+ + +   DK      LD  Y    Y   +++     ++GWYSTG ++ ++D+ +H+    +  +P+ +++D   PK   +P   Y   E        +   +FV  P +I   E E IGV H+ +     +  S L + +     A+  L+ R++ +  YL    +++LP
Sbjct:   27 EVDLHPLVLINISDHFTRTKVQSNYQDNCRVIGVILGVQNGRNVEICNSFEMVYATVDKQ---LVLDIEYLRKKY---EQLFPLYDLLGWYSTGSQVSKDDILLHKQISEHNESPLYLMLDTDSPKSKDLPVIIY---ESELHIVNDEPTTIFVKTPYKIQTGEAERIGVNHIAKVTPSGSEGSGLTSHLFTMHNAISMLNIRVKALSDYLQAVKEKRLP 237          
BLAST of FC921389 vs. ExPASy Swiss-Prot
Match: CSN6A_ARATH (COP9 signalosome complex subunit 6a OS=Arabidopsis thaliana GN=CSN6A PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.733e-14
Identity = 60/223 (26.91%), Postives = 104/223 (46.64%), Query Frame = 3
Query:   72 VHPLVLLSIVDNYNRVAKDTRK----------------------RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHSYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIID--VQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHL--LRDVKDTTIST-LANEVTGKLTALKGLDARLR 659
            +HPLV+++I D+Y RV                            RV G ++G     TV++ NS+ + +     DP    LD S+ E    ++K++    +++GWYSTG    E+D+ IH+   +   +PV V+++  +   +  +P   Y     V +      Q +F H    I   E E I V+H+  L+     + +T LA  +TG  +A+K L++R+R
Sbjct:   13 LHPLVIVNISDHYTRVKTQLNPPASICASGHGSNNGEAMFQQNPRVYGCVIGVQRGRTVEIFNSFELLY-----DPSTQTLDRSFLEKKQELYKKVFPDFYILGWYSTGSDAEESDMHIHKALMDINESPVYVLLNPAINHTQKDLPVTIYESELHVIDGI---PQLIFAHTSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIR 227          
BLAST of FC921389 vs. ExPASy Swiss-Prot
Match: CSN6_XENLA (COP9 signalosome complex subunit 6 OS=Xenopus laevis GN=cops6 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.043e-14
Identity = 52/208 (25.00%), Postives = 104/208 (50.00%), Query Frame = 3
Query:   66 VIVHPLVLLSIVDNYNRVAKDTRK--RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHSYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTT--ISTLANEVTGKLTALKGLDARLREIRGYL 677
            V +HPLV+L+I D++ R+     +  +V+G L+G      ++V NS+ +  + +D+   I   +  Y+ +    FK++      +GWY+TG     +D+ +H+     + +P+ + ++   K   +P   Y   E V +    ++  +   +   +A  E E IGV+H+ R     +   ST+A  +  + +A+K L +R+R I  Y+
Sbjct:   32 VALHPLVILNISDHWIRMRSQEGRPMQVIGALIGKQEGRNIEVMNSFELLSQINDEKITI---NKEYYYTKEEQFKQVFKDMEFLGWYTTGGTPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVY---ESVIDIVNGEATMLLAELSYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVRLILEYV 233          
BLAST of FC921389 vs. ExPASy Swiss-Prot
Match: EIF3F_MALGO (Eukaryotic translation initiation factor 3 subunit F OS=Malassezia globosa (strain ATCC 96807 / CBS 7966) GN=MGL_1945 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.467e-13
Identity = 64/222 (28.83%), Postives = 100/222 (45.05%), Query Frame = 3
Query:   48 SRPIEKVIVHPLVLLSIVDNYNRVAKD-TRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHSYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDI----------HQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYLD 680
            SR I  V VHP+ L SI+D+Y R  +D ++ RV+G LLG+  +  V+V N++AVP  E  +DP    LD  +H  M  +  R+   E V+GWYST  +L  N   I          HQ  H      + +  +V  +  G+  + Y  V  +     +     F+ +P+ +     E+  + H            LA      +T L  L A L +++  LD
Sbjct:   27 SRSITAVKVHPVALFSILDHYLR--RDVSQPRVIGTLLGTRSESEVEVRNAFAVPHGES-QDPWQIHLDAEHHRRMLDLHLRVRPDEVVLGWYSTNTELNSNSALIQDHYSRETAPHQAIH------LTLNTNVADEANGLGVQCY--VSALLGAMAKPEDCAFLSLPTHLLMSTPEQTALRH------------LAAPKPQNITDLDALKASLEDVQAKLD 225          
BLAST of FC921389 vs. ExPASy Swiss-Prot
Match: CSN6_XENTR (COP9 signalosome complex subunit 6 OS=Xenopus tropicalis GN=cops6 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.467e-13
Identity = 51/208 (24.52%), Postives = 104/208 (50.00%), Query Frame = 3
Query:   66 VIVHPLVLLSIVDNYNRVAKDTRK--RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHSYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTT--ISTLANEVTGKLTALKGLDARLREIRGYL 677
            V +HPLV+L+I D++ R+     +  +V+G L+G      ++V NS+ +  + +++   I   +  Y+ +    FK++      +GWY+TG     +D+ +H+     + +P+ + ++   K   +P   Y   E V +    ++  +   +   +A  E E IGV+H+ R     +   ST+A  +  + +A+K L +R+R I  Y+
Sbjct:   33 VALHPLVILNISDHWIRMRSQEGRPVQVIGALIGKQEGRNIEVMNSFELLSQINEEKITI---NKEYYYTKEEQFKQVFKDMEFLGWYTTGGTPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVY---ESVIDIVNGEATMLLAELSYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVRLILEYV 234          
The following BLAST results are available for this feature:
BLAST of FC921389 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
EI3F1_DROPS1.852e-1630.99Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROPE1.852e-1630.99Eukaryotic translation initiation factor 3 subunit... [more]
CSN6B_ARATH1.568e-1528.25COP9 signalosome complex subunit 6b OS=Arabidopsis... [more]
EIF3F_DICDI5.957e-1526.54Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_BOMMO5.957e-1527.75Eukaryotic translation initiation factor 3 subunit... [more]
CSN6_DICDI1.016e-1426.36COP9 signalosome complex subunit 6 OS=Dictyosteliu... [more]
CSN6A_ARATH1.733e-1426.91COP9 signalosome complex subunit 6a OS=Arabidopsis... [more]
CSN6_XENLA5.043e-1425.00COP9 signalosome complex subunit 6 OS=Xenopus laev... [more]
EIF3F_MALGO1.467e-1328.83Eukaryotic translation initiation factor 3 subunit... [more]
CSN6_XENTR1.467e-1324.52COP9 signalosome complex subunit 6 OS=Xenopus trop... [more]

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Properties
Property NameValue
Genbank descriptionC32104D07EF RVDevelopN Citrus clementina cDNA clone C32104D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921389 ID=FC921389; Name=FC921389; organism=Citrus clementina; type=EST; length=725bp
GACAGAGAGATTCGAATATGGACGTGATAAAGACGCAGCAAATTTCATCG
AGACCCATAGAGAAGGTCATAGTTCACCCGCTCGTCTTACTAAGCATCGT
CGACAATTACAACCGCGTCGCCAAGGACACGCGCAAGCGCGTCGTCGGCG
TCCTCCTCGGTAGCTCCTTCAAAGGCACCGTCGATGTCTCCAACAGCTAC
GCAGTGCCTTTTGAGGAAGATGACAAAGACCCAGGAATATGGTTTCTCGA
CCACAGCTACCATGAATCAATGTATTCAATGTTCAAAAGAATCAATGCCA
AGGAGCATGTCGTAGGTTGGTACAGTACAGGACCCAAGCTACGAGAGAAT
GATCTTGACATTCACCAATTATTTCACAACTATGTCCCAAATCCTGTATT
GGTCATTATTGATGTCCAACCAAAGGAGCTTGGAATACCCACCAAGGCTT
ACTATGATGTTGAGGAGGTTAAAGAGAATGCTACTCAGAAAAGCCAAAAG
GTCTTTGTACACGTGCCATCAGAAATTGCCGCTCATGAAGTCGAAGAAAT
CGGAGTGGAGCACTTGCTAAGGGACGTGAAAGACACCACCATCAGTACAC
TTGCAAATGAGGTCACTGGAAAACTTACAGCCCTAAAGGGTCTGGATGCT
CGTTTGCGTGAGATCCGTGGTTACCTTGACCTTGNTATTGATGAGAAACT
CCCGTTGATCACGAGATACTTTACC
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