FC921389
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC921389 vs. ExPASy Swiss-Prot
Match: EI3F1_DROPS (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila pseudoobscura pseudoobscura GN=eIF3-S5-1 PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.852e-16 Identity = 53/171 (30.99%), Postives = 92/171 (53.80%), Query Frame = 3 Query: 66 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHSYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDV 578 V VHP+VL +VD + R ++ RV+G LLGS KG V+V+N + VP +E D + SY MY + +++N+ E VVGW++TG + + IH+ + NPV + +D + + ++Y ++ K+ +F +P E+ ++E E G++ L + V Sbjct: 8 VRVHPVVLFQVVDAFERRNAESH-RVIGTLLGSVEKGVVEVTNCFCVPHKEHDDQVEA---ELSYALDMYDLNRKVNSNEAVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRSYVCIQLGVPGG--KTGCMFTPIPVELTSYEPETFGLKLLQKTV 172
BLAST of FC921389 vs. ExPASy Swiss-Prot
Match: EI3F1_DROPE (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila persimilis GN=eIF3-S5-1 PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.852e-16 Identity = 53/171 (30.99%), Postives = 92/171 (53.80%), Query Frame = 3 Query: 66 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHSYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDV 578 V VHP+VL +VD + R ++ RV+G LLGS KG V+V+N + VP +E D + SY MY + +++N+ E VVGW++TG + + IH+ + NPV + +D + + ++Y ++ K+ +F +P E+ ++E E G++ L + V Sbjct: 8 VRVHPVVLFQVVDAFERRNAESH-RVIGTLLGSVEKGVVEVTNCFCVPHKEHDDQVEA---ELSYALDMYDLNRKVNSNEAVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRSYVCIQLGVPGG--KTGCMFTPIPVELTSYEPETFGLKLLQKTV 172
BLAST of FC921389 vs. ExPASy Swiss-Prot
Match: CSN6B_ARATH (COP9 signalosome complex subunit 6b OS=Arabidopsis thaliana GN=CSN6B PE=1 SV=2) HSP 1 Score: 83.1889 bits (204), Expect = 1.568e-15 Identity = 63/223 (28.25%), Postives = 106/223 (47.53%), Query Frame = 3 Query: 72 VHPLVLLSIVDNYNRVAKDTRK----------------------RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHSYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIID--VQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHL--LRDVKDTTIST-LANEVTGKLTALKGLDARLR 659 +HPLV+L+I D++ RV RV G ++G TV++ NS+ + F DP + LD S+ E ++K++ +V+GWYSTG E+D+ IH+ + +PV V+++ + + +P Y V + Q +FVH I E E I V+H+ L+ + +T LA +TG +A+K L++R+R Sbjct: 13 LHPLVMLNISDHFTRVKTQLNPPAASCATGNGSNNADAMLLQNPRVYGCVIGLQRGRTVEIFNSFELIF-----DPALDTLDRSFLEKKQELYKKVFPDFYVLGWYSTGSDATESDMHIHKALMDINESPVYVLLNPAINHAQKDLPVTIYESEFHVIDGI---PQSIFVHTSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIR 227
BLAST of FC921389 vs. ExPASy Swiss-Prot
Match: EIF3F_DICDI (Eukaryotic translation initiation factor 3 subunit F OS=Dictyostelium discoideum GN=eif3f PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 5.957e-15 Identity = 56/211 (26.54%), Postives = 102/211 (48.34%), Query Frame = 3 Query: 66 VIVHPLVLLSIVDNYNR--VAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHSYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPN--PVLVIID--VQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYLD 680 V VHP+V+ +I+D+Y R V +D RV+G LLG + G +++ N + V E ++ ++ Y M + + + +E ++GWY+TG + EN + I+ + + + N P+ + +D + +GI Y + N F +P EI E E G+E + + D ++L +E+ +L LD L I Y++ Sbjct: 15 VKVHPVVIFNILDHYIRRNVGQD---RVIGTLLGFNNDGVLEIRNCFPVVHSETEQIA----VEMEYQRKMLDLHLKSSPREPIIGWYATGNDINENSVHINNFYRDEMGNSTPIHLTVDTGLTNDTMGIHA---YMAHNLSLNPESSLGSYFSQLPLEILTFEAENAGLESIAQTKYDQQSTSLLSELESLQGSLTKLDEMLESITSYIE 215
BLAST of FC921389 vs. ExPASy Swiss-Prot
Match: EIF3F_BOMMO (Eukaryotic translation initiation factor 3 subunit F OS=Bombyx mori GN=eIF3-S5 PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 5.957e-15 Identity = 58/209 (27.75%), Postives = 102/209 (48.80%), Query Frame = 3 Query: 66 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHSYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDV----KDTTISTLANEVTGKLTALKGLDARLREIRGYLD 680 V VHP+VL IVD Y R D+ RV+G L G+S KG V+V+N + VP +E + +Y +Y + +R+N+ E +VGW++TG ++ + IH+ + PV V +D + +AY V N Q +F V + +E E +G++ + V + ++ +++ ++A L++ L + Y D Sbjct: 7 VKVHPVVLFQIVDAYERRNADSH-RVIGTLWGTSDKGVVEVTNCFCVPHKEHADQVEA---ELNYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGRMGLRAYVCVPLGVPNGKQGC--MFTPVDVTLTCYEPEIVGLQVCQKTVSGGGRGSSGVAAGSDLAQVMSAASSLESLLEQALQYAD 209
BLAST of FC921389 vs. ExPASy Swiss-Prot
Match: CSN6_DICDI (COP9 signalosome complex subunit 6 OS=Dictyostelium discoideum GN=csn6 PE=1 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.016e-14 Identity = 58/220 (26.36%), Postives = 107/220 (48.64%), Query Frame = 3 Query: 63 KVIVHPLVLLSIVDNYNRVAKDTRK----RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHSYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDV-QPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLR-DVKDTTISTLANEVTGKLTALKGLDARLREIRGYLDLXIDEKLP 704 +V +HPLVL++I D++ R + RV+GV+LG V++ NS+ + + DK LD Y Y +++ ++GWYSTG ++ ++D+ +H+ + +P+ +++D PK +P Y E + +FV P +I E E IGV H+ + + S L + + A+ L+ R++ + YL +++LP Sbjct: 27 EVDLHPLVLINISDHFTRTKVQSNYQDNCRVIGVILGVQNGRNVEICNSFEMVYATVDKQ---LVLDIEYLRKKY---EQLFPLYDLLGWYSTGSQVSKDDILLHKQISEHNESPLYLMLDTDSPKSKDLPVIIY---ESELHIVNDEPTTIFVKTPYKIQTGEAERIGVNHIAKVTPSGSEGSGLTSHLFTMHNAISMLNIRVKALSDYLQAVKEKRLP 237
BLAST of FC921389 vs. ExPASy Swiss-Prot
Match: CSN6A_ARATH (COP9 signalosome complex subunit 6a OS=Arabidopsis thaliana GN=CSN6A PE=1 SV=2) HSP 1 Score: 79.7221 bits (195), Expect = 1.733e-14 Identity = 60/223 (26.91%), Postives = 104/223 (46.64%), Query Frame = 3 Query: 72 VHPLVLLSIVDNYNRVAKDTRK----------------------RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHSYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIID--VQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHL--LRDVKDTTIST-LANEVTGKLTALKGLDARLR 659 +HPLV+++I D+Y RV RV G ++G TV++ NS+ + + DP LD S+ E ++K++ +++GWYSTG E+D+ IH+ + +PV V+++ + + +P Y V + Q +F H I E E I V+H+ L+ + +T LA +TG +A+K L++R+R Sbjct: 13 LHPLVIVNISDHYTRVKTQLNPPASICASGHGSNNGEAMFQQNPRVYGCVIGVQRGRTVEIFNSFELLY-----DPSTQTLDRSFLEKKQELYKKVFPDFYILGWYSTGSDAEESDMHIHKALMDINESPVYVLLNPAINHTQKDLPVTIYESELHVIDGI---PQLIFAHTSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIR 227
BLAST of FC921389 vs. ExPASy Swiss-Prot
Match: CSN6_XENLA (COP9 signalosome complex subunit 6 OS=Xenopus laevis GN=cops6 PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 5.043e-14 Identity = 52/208 (25.00%), Postives = 104/208 (50.00%), Query Frame = 3 Query: 66 VIVHPLVLLSIVDNYNRVAKDTRK--RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHSYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTT--ISTLANEVTGKLTALKGLDARLREIRGYL 677 V +HPLV+L+I D++ R+ + +V+G L+G ++V NS+ + + +D+ I + Y+ + FK++ +GWY+TG +D+ +H+ + +P+ + ++ K +P Y E V + ++ + + +A E E IGV+H+ R + ST+A + + +A+K L +R+R I Y+ Sbjct: 32 VALHPLVILNISDHWIRMRSQEGRPMQVIGALIGKQEGRNIEVMNSFELLSQINDEKITI---NKEYYYTKEEQFKQVFKDMEFLGWYTTGGTPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVY---ESVIDIVNGEATMLLAELSYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVRLILEYV 233
BLAST of FC921389 vs. ExPASy Swiss-Prot
Match: EIF3F_MALGO (Eukaryotic translation initiation factor 3 subunit F OS=Malassezia globosa (strain ATCC 96807 / CBS 7966) GN=MGL_1945 PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.467e-13 Identity = 64/222 (28.83%), Postives = 100/222 (45.05%), Query Frame = 3 Query: 48 SRPIEKVIVHPLVLLSIVDNYNRVAKD-TRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHSYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDI----------HQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYLD 680 SR I V VHP+ L SI+D+Y R +D ++ RV+G LLG+ + V+V N++AVP E +DP LD +H M + R+ E V+GWYST +L N I HQ H + + +V + G+ + Y V + + F+ +P+ + E+ + H LA +T L L A L +++ LD Sbjct: 27 SRSITAVKVHPVALFSILDHYLR--RDVSQPRVIGTLLGTRSESEVEVRNAFAVPHGES-QDPWQIHLDAEHHRRMLDLHLRVRPDEVVLGWYSTNTELNSNSALIQDHYSRETAPHQAIH------LTLNTNVADEANGLGVQCY--VSALLGAMAKPEDCAFLSLPTHLLMSTPEQTALRH------------LAAPKPQNITDLDALKASLEDVQAKLD 225
BLAST of FC921389 vs. ExPASy Swiss-Prot
Match: CSN6_XENTR (COP9 signalosome complex subunit 6 OS=Xenopus tropicalis GN=cops6 PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.467e-13 Identity = 51/208 (24.52%), Postives = 104/208 (50.00%), Query Frame = 3 Query: 66 VIVHPLVLLSIVDNYNRVAKDTRK--RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHSYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTT--ISTLANEVTGKLTALKGLDARLREIRGYL 677 V +HPLV+L+I D++ R+ + +V+G L+G ++V NS+ + + +++ I + Y+ + FK++ +GWY+TG +D+ +H+ + +P+ + ++ K +P Y E V + ++ + + +A E E IGV+H+ R + ST+A + + +A+K L +R+R I Y+ Sbjct: 33 VALHPLVILNISDHWIRMRSQEGRPVQVIGALIGKQEGRNIEVMNSFELLSQINEEKITI---NKEYYYTKEEQFKQVFKDMEFLGWYTTGGTPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVY---ESVIDIVNGEATMLLAELSYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVRLILEYV 234 The following BLAST results are available for this feature:
BLAST of FC921389 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 48
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Sequences
The
following sequences are available for this feature:
EST sequence >FC921389 ID=FC921389; Name=FC921389; organism=Citrus clementina; type=EST; length=725bpback to top |