FC921421

Overview
NameFC921421
Unique NameFC921421
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length622
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921421 vs. ExPASy Swiss-Prot
Match: H4_TETTH (Histone H4 OS=Tetrahymena thermophila GN=HHF1 PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 2.714e-28
Identity = 62/72 (86.11%), Postives = 68/72 (94.44%), Query Frame = 1
Query:  175 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 390
            +I+GITKPAIRRLARRGGVKRIS  IY+++R VLK FLENV+RDAVTYTEHARRKTVTAMDVVYALKRQGRT
Sbjct:   26 SIEGITKPAIRRLARRGGVKRISSFIYDDSRQVLKSFLENVVRDAVTYTEHARRKTVTAMDVVYALKRQGRT 97          
BLAST of FC921421 vs. ExPASy Swiss-Prot
Match: H42_TETPY (Histone H4, minor OS=Tetrahymena pyriformis PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 2.714e-28
Identity = 62/72 (86.11%), Postives = 68/72 (94.44%), Query Frame = 1
Query:  175 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 390
            +I+GITKPAIRRLARRGGVKRIS  IY+++R VLK FLENV+RDAVTYTEHARRKTVTAMDVVYALKRQGRT
Sbjct:   26 SIEGITKPAIRRLARRGGVKRISSFIYDDSRQVLKSFLENVVRDAVTYTEHARRKTVTAMDVVYALKRQGRT 97          
BLAST of FC921421 vs. ExPASy Swiss-Prot
Match: H41_TETPY (Histone H4, major OS=Tetrahymena pyriformis PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 2.714e-28
Identity = 62/72 (86.11%), Postives = 68/72 (94.44%), Query Frame = 1
Query:  175 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 390
            +I+GITKPAIRRLARRGGVKRIS  IY+++R VLK FLENV+RDAVTYTEHARRKTVTAMDVVYALKRQGRT
Sbjct:   26 SIEGITKPAIRRLARRGGVKRISSFIYDDSRQVLKSFLENVVRDAVTYTEHARRKTVTAMDVVYALKRQGRT 97          
BLAST of FC921421 vs. ExPASy Swiss-Prot
Match: H42_BLEJA (Histone H4 (Fragment) OS=Blepharisma japonicum GN=H4 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.629e-28
Identity = 61/75 (81.33%), Postives = 72/75 (96.00%), Query Frame = 1
Query:  163 VLRDNIQGITKPAIRRLARRGGVKR-ISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQG 384
            V+R+N QGITKPAIRRLARRGGVKR +SGL+Y+ETR VLK+FLE+V+RDAVTYTEHA+R+TVTA+DVVYALKRQG
Sbjct:   15 VIRENNQGITKPAIRRLARRGGVKRTLSGLVYDETRNVLKVFLESVVRDAVTYTEHAKRETVTALDVVYALKRQG 89          
BLAST of FC921421 vs. ExPASy Swiss-Prot
Match: H4_ENTHI (Histone H4 OS=Entamoeba histolytica PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.895e-28
Identity = 60/74 (81.08%), Postives = 69/74 (93.24%), Query Frame = 1
Query:  169 RDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 390
            +D ++GITKPAIRRLARRGGVKRI+G +Y+ETR VLK FLE VIRD+VTYTEHA+R+TVTAMDVVYALKRQGRT
Sbjct:   40 QDALKGITKPAIRRLARRGGVKRINGAVYDETRNVLKQFLEQVIRDSVTYTEHAKRRTVTAMDVVYALKRQGRT 113          
BLAST of FC921421 vs. ExPASy Swiss-Prot
Match: H4_DICDI (Histone H4 OS=Dictyostelium discoideum GN=H4a PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.540e-26
Identity = 60/74 (81.08%), Postives = 66/74 (89.19%), Query Frame = 1
Query:  169 RDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 390
            +++I GITKPAIRRLARRGGVKRIS  IYEETR VL+ FL NVIRD+V YTEHA R+TVTAMDVVYALKRQGRT
Sbjct:   29 KEHINGITKPAIRRLARRGGVKRISFPIYEETRNVLRTFLTNVIRDSVAYTEHAGRRTVTAMDVVYALKRQGRT 102          
BLAST of FC921421 vs. ExPASy Swiss-Prot
Match: H4G_HUMAN (Histone H4-like protein type G OS=Homo sapiens GN=HIST1H4G PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.260e-25
Identity = 62/76 (81.58%), Postives = 64/76 (84.21%), Query Frame = 1
Query:  163 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 390
            VL DNIQGITK  IRRLAR GGVKRI GLIYEETR V K+FLENVI  AVT TEHA+RKTVTAM VVY LKRQGRT
Sbjct:   22 VLSDNIQGITKCTIRRLARHGGVKRILGLIYEETRRVFKVFLENVIWYAVTNTEHAKRKTVTAMAVVYVLKRQGRT 97          
The following BLAST results are available for this feature:
BLAST of FC921421 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_TETTH2.714e-2886.11Histone H4 OS=Tetrahymena thermophila GN=HHF1 PE=1... [more]
H42_TETPY2.714e-2886.11Histone H4, minor OS=Tetrahymena pyriformis PE=1 S... [more]
H41_TETPY2.714e-2886.11Histone H4, major OS=Tetrahymena pyriformis PE=1 S... [more]
H42_BLEJA4.629e-2881.33Histone H4 (Fragment) OS=Blepharisma japonicum GN=... [more]
H4_ENTHI7.895e-2881.08Histone H4 OS=Entamoeba histolytica PE=3 SV=1[more]
H4_DICDI2.540e-2681.08Histone H4 OS=Dictyostelium discoideum GN=H4a PE=1... [more]
H4G_HUMAN1.260e-2581.58Histone H4-like protein type G OS=Homo sapiens GN=... [more]

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Properties
Property NameValue
Genbank descriptionC32104G07EF RVDevelopN Citrus clementina cDNA clone C32104G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921421 ID=FC921421; Name=FC921421; organism=Citrus clementina; type=EST; length=622bp
GAAAAAAAAAACGAGCAAAGGTTGAGAGTGGGGGAAAAAAGAAAGAAAAA
TTCCCAATTAGTTTGAAAACCGTAATTAGCATTTTAATTTCGTAGCAGAA
TGTCTGGACGCGGCAAGGGAGGCAAGGGATTGGGGAAGGGAGGAGCCAAG
AGGCATCGCAAGGTGTTGCGTGATAACATTCAGGGCATCACCAAGCCGGC
TATTCGCCGTTTGGCCAGAAGAGGAGGCGTTAAGAGAATCAGCGGTCTCA
TCTACGAGGAGACACGCGGCGTCCTCAAGATCTTCTTGGAGAACGTCATT
CGCGATGCTGTGACCTACACTGAGCACGCTCGCCGAAAGACGGTGACCGC
CATGGATGTCGTTTATGCGCTCAAGAGGCAGGGCAGGACTCTCTATGGCT
TTGGTGGTTGATGTGGCGTCGTTTTGTATTTTGTGTTTTAGGGTTTTCCT
TTTTTCCTGTAAACCAGTGAACGTGGTTGTGTCTAGCGGGTGGGTTTAAA
TTGGAGGCAACTTGTATTTGCCGTTTCCTAGGGGTTTTTTTATTTTTTTG
GTTCATTGGTGTTTTCATCTTTTGCAATGAGAATCTAGATGTTTGCGAAA
AAAAAAAAAAAAAAAAAAAAAA
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