FC921421 | Citrus Genome Database

Overview


Name	FC921421
Unique Name	FC921421
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	622

Libraries


Library Name	Type
RVDevelopN	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of FC921421 vs. ExPASy Swiss-Prot
Match: H4_LITVA (Histone H4 OS=Litopenaeus vannamei PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 8.151e-33
Identity = 71/76 (93.42%), Postives = 73/76 (96.05%), Query Frame = 1

Query:  163 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 390
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKR   T
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRXXXT 97

[Close]

BLAST of FC921421 vs. ExPASy Swiss-Prot
Match: H4_APIME (Histone H4 OS=Apis mellifera PE=3 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 8.151e-33
Identity = 71/76 (93.42%), Postives = 73/76 (96.05%), Query Frame = 1

Query:  163 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 390
            VL DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEH +RKTVTAMDVVYALK QGRT
Sbjct:   22 VLGDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHTKRKTVTAMDVVYALKIQGRT 97

[Close]

BLAST of FC921421 vs. ExPASy Swiss-Prot
Match: H4_TRICD (Histone H4 OS=Trichogramma cacoeciae PE=3 SV=3)

HSP 1 Score: 139.813 bits (351), Expect = 1.065e-32
Identity = 71/76 (93.42%), Postives = 73/76 (96.05%), Query Frame = 1

Query:  163 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 390
            VLRDNIQGITKPAIRRLARRGGVKRIS LIYEETRGVLK+FLENVIRDAVTYTEHA+  TVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISSLIYEETRGVLKVFLENVIRDAVTYTEHAKIPTVTAMDVVYALKRQGRT 97

[Close]

BLAST of FC921421 vs. ExPASy Swiss-Prot
Match: H4_SCHPO (Histone H4 OS=Schizosaccharomyces pombe GN=hhf1 PE=1 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 3.097e-32
Identity = 67/76 (88.16%), Postives = 74/76 (97.37%), Query Frame = 1

Query:  163 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 390
            +LRDNIQGITKPAIRRLARRGGVKRIS L+YEETR VLK+FLENVIRDAVTYTEHA+RKTVT++DVVY+LKRQGRT
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTEHAKRKTVTSLDVVYSLKRQGRT 97

[Close]

BLAST of FC921421 vs. ExPASy Swiss-Prot
Match: H4_NEUCR (Histone H4 OS=Neurospora crassa GN=hhf-1 PE=3 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 4.045e-32
Identity = 68/76 (89.47%), Postives = 73/76 (96.05%), Query Frame = 1

Query:  163 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 390
            +LRDNIQGITKPAIRRLARRGGVKRIS +IYEETRGVLK FLE VIRDAVTYTEHA+RKTVT++DVVYALKRQGRT
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISAMIYEETRGVLKTFLEGVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRT 97

[Close]

BLAST of FC921421 vs. ExPASy Swiss-Prot
Match: H4_ASPOR (Histone H4 OS=Aspergillus oryzae GN=hhfA PE=3 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 4.045e-32
Identity = 68/76 (89.47%), Postives = 73/76 (96.05%), Query Frame = 1

Query:  163 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 390
            +LRDNIQGITKPAIRRLARRGGVKRIS +IYEETRGVLK FLE VIRDAVTYTEHA+RKTVT++DVVYALKRQGRT
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISAMIYEETRGVLKTFLEGVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRT 97

[Close]

BLAST of FC921421 vs. ExPASy Swiss-Prot
Match: H4_ASPFU (Histone H4 OS=Aspergillus fumigatus GN=hhfA PE=3 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 4.045e-32
Identity = 68/76 (89.47%), Postives = 73/76 (96.05%), Query Frame = 1

Query:  163 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 390
            +LRDNIQGITKPAIRRLARRGGVKRIS +IYEETRGVLK FLE VIRDAVTYTEHA+RKTVT++DVVYALKRQGRT
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISAMIYEETRGVLKTFLEGVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRT 97

[Close]

BLAST of FC921421 vs. ExPASy Swiss-Prot
Match: H42_PENFN (Histone H4.2 OS=Penicillium funiculosum GN=H4.2 PE=3 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 4.045e-32
Identity = 68/76 (89.47%), Postives = 74/76 (97.37%), Query Frame = 1

Query:  163 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 390
            +LRDNIQGITKPAIRRLARRGGVKRIS +IYEETRGVLK FLE+VIRDAVTYTEHA+RKTVT++DVVYALKRQGRT
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISAMIYEETRGVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRT 97

[Close]

BLAST of FC921421 vs. ExPASy Swiss-Prot
Match: H42_EMENI (Histone H4.2 OS=Emericella nidulans GN=hhfB PE=3 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 4.045e-32
Identity = 68/76 (89.47%), Postives = 74/76 (97.37%), Query Frame = 1

Query:  163 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 390
            +LRDNIQGITKPAIRRLARRGGVKRIS +IYEETRGVLK FLE+VIRDAVTYTEHA+RKTVT++DVVYALKRQGRT
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISAMIYEETRGVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRT 97

[Close]

BLAST of FC921421 vs. ExPASy Swiss-Prot
Match: H41_PENFN (Histone H4.1 OS=Penicillium funiculosum GN=H4.1 PE=3 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 4.045e-32
Identity = 68/76 (89.47%), Postives = 73/76 (96.05%), Query Frame = 1

Query:  163 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 390
            +LRDNIQGITKPAIRRLARRGGVKRIS +IYEETRGVLK FLE VIRDAVTYTEHA+RKTVT++DVVYALKRQGRT
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISAMIYEETRGVLKTFLEGVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRT 97

The following BLAST results are available for this feature:

BLAST of FC921421 vs. ExPASy Swiss-Prot

BLAST of FC921421 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107


Match Name	E-value	Identity	Description
H4_LITVA	8.151e-33	93.42	Histone H4 OS=Litopenaeus vannamei PE=1 SV=2	[more]
H4_APIME	8.151e-33	93.42	Histone H4 OS=Apis mellifera PE=3 SV=3	[more]
H4_TRICD	1.065e-32	93.42	Histone H4 OS=Trichogramma cacoeciae PE=3 SV=3	[more]
H4_SCHPO	3.097e-32	88.16	Histone H4 OS=Schizosaccharomyces pombe GN=hhf1 PE...	[more]
H4_NEUCR	4.045e-32	89.47	Histone H4 OS=Neurospora crassa GN=hhf-1 PE=3 SV=2	[more]
H4_ASPOR	4.045e-32	89.47	Histone H4 OS=Aspergillus oryzae GN=hhfA PE=3 SV=3	[more]
H4_ASPFU	4.045e-32	89.47	Histone H4 OS=Aspergillus fumigatus GN=hhfA PE=3 S...	[more]
H42_PENFN	4.045e-32	89.47	Histone H4.2 OS=Penicillium funiculosum GN=H4.2 PE...	[more]
H42_EMENI	4.045e-32	89.47	Histone H4.2 OS=Emericella nidulans GN=hhfB PE=3 S...	[more]
H41_PENFN	4.045e-32	89.47	Histone H4.1 OS=Penicillium funiculosum GN=H4.1 PE...	[more]

Pages

Properties


Property Name	Value
Genbank description	C32104G07EF RVDevelopN Citrus clementina cDNA clone C32104G07, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC921421 ID=FC921421; Name=FC921421; organism=Citrus clementina; type=EST; length=622bp
GAAAAAAAAAACGAGCAAAGGTTGAGAGTGGGGGAAAAAAGAAAGAAAAA
TTCCCAATTAGTTTGAAAACCGTAATTAGCATTTTAATTTCGTAGCAGAA
TGTCTGGACGCGGCAAGGGAGGCAAGGGATTGGGGAAGGGAGGAGCCAAG
AGGCATCGCAAGGTGTTGCGTGATAACATTCAGGGCATCACCAAGCCGGC
TATTCGCCGTTTGGCCAGAAGAGGAGGCGTTAAGAGAATCAGCGGTCTCA
TCTACGAGGAGACACGCGGCGTCCTCAAGATCTTCTTGGAGAACGTCATT
CGCGATGCTGTGACCTACACTGAGCACGCTCGCCGAAAGACGGTGACCGC
CATGGATGTCGTTTATGCGCTCAAGAGGCAGGGCAGGACTCTCTATGGCT
TTGGTGGTTGATGTGGCGTCGTTTTGTATTTTGTGTTTTAGGGTTTTCCT
TTTTTCCTGTAAACCAGTGAACGTGGTTGTGTCTAGCGGGTGGGTTTAAA
TTGGAGGCAACTTGTATTTGCCGTTTCCTAGGGGTTTTTTTATTTTTTTG
GTTCATTGGTGTTTTCATCTTTTGCAATGAGAATCTAGATGTTTGCGAAA
AAAAAAAAAAAAAAAAAAAAAA