FC921423

Overview
NameFC921423
Unique NameFC921423
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length764
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921423 vs. ExPASy Swiss-Prot
Match: GLIP3_ARATH (GDSL esterase/lipase 3 OS=Arabidopsis thaliana GN=GLIP3 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.984e-12
Identity = 65/185 (35.14%), Postives = 86/185 (46.49%), Query Frame = 1
Query:   94 AIFNFGDSLSDTGNFLVSGALAFPVIGKLPYGETFFRHATGRCSDGRLVIDFMAEAFRLPYLPPYLALKEGQN-FKHGVNFAVAGATALRSAIFYKQKIGSRLWTNDSLSVQIDWFKKLKSSICSTRKDCET--YFKKSLFFVGEIGGNDYNYRAFVGGSINQLRASVPLVVKAITNATRLLIEE 639
            A+F FGDSL D GN      ++       PYG+T F+  TGR SDG        E   LP +PP L    G N F +GV+FA AGA AL           S L    +L  Q++ FK ++ S+ S   D ET   F ++++    IG NDY Y      S  +  +    V   I N T  +IEE
Sbjct:   35 ALFVFGDSLFDAGNNNYINTVSSFRSNIWPYGQTNFKFPTGRLSDG-------PEKAWLPSIPPNLQPNNGNNQFTYGVSFASAGAGALAE---------SFLGMVINLGTQLNNFKDVEKSLRSELGDAETKRVFSRAVYLF-HIGANDYFYPFSANSSTFKSNSKEKFVDFVIGNIT-FVIEE 201          
BLAST of FC921423 vs. ExPASy Swiss-Prot
Match: GDL32_ARATH (GDSL esterase/lipase At2g03980 OS=Arabidopsis thaliana GN=At2g03980 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.514e-11
Identity = 63/192 (32.81%), Postives = 94/192 (48.96%), Query Frame = 1
Query:   31 FHLVFALCLLRSV---STSPLK---------YHAIFNFGDSLSDTGNFLVSGALAFPVIGKLP-YGETFFR-HATGRCSDGRLVIDFMAEAFRLPYLPPYLAL--KEGQNFKHGVNFAVAGATALRSAIFYKQKIGSRLWTNDSLSVQIDWFKK-----LKSSICSTRKDCETYFKKSLFFVGEIGGNDYNY 543
            + L+  LCLL      ST PL+         + A +  GDSL D+GN   +  L   V    P YG  F    ATGR S+G+ + D++A  + LP +P YL L  +E  +   G+N+A AG   L        + G ++ T  SLSVQ+D F++     LK +    + +   +  +SLF +  IG NDY +
Sbjct:   10 YFLLLLLCLLNITTINSTKPLEQETVLFGGNFPAFYVIGDSLVDSGN---NNHLTTMVKSNFPPYGSDFEGGKATGRFSNGKTIADYIAIYYGLPLVPAYLGLSQEEKNSISTGINYASAGCGIL-------PQTGRQIGTCLSLSVQVDMFQETITNNLKKNF--KKSELREHLAESLFMIA-IGVNDYTF 188          
BLAST of FC921423 vs. ExPASy Swiss-Prot
Match: GLIP7_ARATH (GDSL esterase/lipase 7 OS=Arabidopsis thaliana GN=GLIP7 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.977e-11
Identity = 71/224 (31.70%), Postives = 98/224 (43.75%), Query Frame = 1
Query:   94 AIFNFGDSLSDTGNFLVSGALAFPVIGKLPYGETFFRHATGRCSDGRLVIDFMAEAFRLPYLPPYLA-LKEGQNFKHGVNFAVAGATALRSAIFYKQKIGSRLWTNDSLSVQIDWFKKLKSSICSTRKDCETYFKKSLFFVGEIGGNDY--NYRAFVGGSINQLRAS---VPLVVKAITNATRLLIEEGAVELVVPGNFPSGARLCT*PYSEASRNGLRSNGCL 747
            A F FGDSL D+GN      LA       PYG  F    TGR  +GR V+D+ A    LP +PPYL+ L  GQN   GVN+A A A  L       +  G+R   N  +S      +           D   Y  KS+  +  IG NDY  NY      S +Q  +      L++K ++     L   GA ++V+ G+ P G      P   +   G  ++GC+
Sbjct:   30 AFFVFGDSLVDSGNNNYIPTLARA--NYFPYGIDF-GFPTGRFCNGRTVVDYGATYLGLPLVPPYLSPLSIGQNALRGVNYASAAAGILDET---GRHYGARTTFNGQISQFEITIELRLRRFFQNPADLRKYLAKSIIGI-NIGSNDYINNYLMPERYSTSQTYSGEDYADLLIKTLSAQISRLYNLGARKMVLAGSGPLGCI----PSQLSMVTGNNTSGCV 242          
BLAST of FC921423 vs. ExPASy Swiss-Prot
Match: GLIP6_ARATH (GDSL esterase/lipase 6 OS=Arabidopsis thaliana GN=GLIP6 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.582e-11
Identity = 64/217 (29.49%), Postives = 97/217 (44.70%), Query Frame = 1
Query:   16 LAMKFFHLVFALCLLRSVSTSPLKYHAIFNFGDSLSDTGNFLVS----GALAFPVIGKLPYGETFFRHATGRCSDGRLVIDFMAEAFRLPYLPPYLALK-----EGQNFKHGVNFAVAGATALRSAIFYKQKIGSRLWTNDSLSVQIDWFKKLKSSICSTRKDCETYFKKSLFFVGEIGGND-YNY-----------RAFVGGSINQLRASVPLVVK 603
            L M    L+  + L +S ST P    AIF FGDS+ D GN   +        FP     PYG +FF   TGR ++GR V DF++E   LP   P+L L+        NF +G+NFA AG+  L           ++      +  Q+  F+ L       +    +  ++SLF + E G ND +NY            A+V   ++Q+  ++  + K
Sbjct:    9 LLMCLLLLISPVVLAKSSSTVP----AIFTFGDSIFDAGNNHYNKNCTAQADFP-----PYGSSFFHRPTGRFTNGRTVADFISEFVGLPLQKPFLELQIQILNGTSNFSNGINFASAGSGLLLDT--------NKFMGVTPIQTQLQQFQTLVEQNLIEK----SIIQESLFLL-ETGSNDIFNYFLPFRAPTLSPDAYVNAMLDQVNKTIDQIYK 203          
The following BLAST results are available for this feature:
BLAST of FC921423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
GLIP3_ARATH3.984e-1235.14GDSL esterase/lipase 3 OS=Arabidopsis thaliana GN=... [more]
GDL32_ARATH1.514e-1132.81GDSL esterase/lipase At2g03980 OS=Arabidopsis thal... [more]
GLIP7_ARATH1.977e-1131.70GDSL esterase/lipase 7 OS=Arabidopsis thaliana GN=... [more]
GLIP6_ARATH2.582e-1129.49GDSL esterase/lipase 6 OS=Arabidopsis thaliana GN=... [more]

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Properties
Property NameValue
Genbank descriptionC32104G09EF RVDevelopN Citrus clementina cDNA clone C32104G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921423 ID=FC921423; Name=FC921423; organism=Citrus clementina; type=EST; length=764bp
GATATATTTATCATATTAGCCATGAAATTTTTTCATCTCGTCTTTGCTTT
GTGTTTGTTGAGGTCAGTTTCAACAAGTCCTTTAAAGTATCATGCAATAT
TCAACTTTGGTGATTCTTTGAGTGACACCGGCAATTTTCTTGTTTCCGGT
GCCCTCGCATTTCCAGTTATCGGAAAACTCCCTTATGGCGAAACCTTCTT
TCGACACGCAACCGGTCGGTGCTCGGATGGACGACTTGTCATTGATTTTA
TGGCTGAGGCATTTCGGTTGCCGTACTTGCCACCATATCTAGCATTAAAA
GAAGGTCAAAATTTTAAACATGGGGTGAATTTTGCTGTTGCTGGTGCTAC
TGCACTTCGATCAGCGATTTTCTATAAGCAAAAAATTGGATCTCGTTTGT
GGACGAATGATTCATTGAGCGTTCAGATCGATTGGTTTAAGAAGCTCAAG
TCCTCAATTTGCTCTACTAGAAAAGATTGTGAGACCTACTTCAAAAAATC
GCTATTTTTCGTGGGAGAGATTGGTGGAAATGACTATAATTATCGTGCGT
TTGTTGGTGGAAGCATTAATCAACTTCGAGCATCCGTGCCTCTCGTTGTT
AAAGCCATTACTAATGCCACCCGTTTGTTGATAGAGGAAGGTGCGGTGGA
GCTGGTGGTGCCGGGGAATTTCCCATCGGGTGCTCGGCTGTGTACTTGAC
CTTATTCAGAAGCCTCACGAAATGGACTACGATCAAATGGGTGCTTGAAG
CACCAATGCTTTGC
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