FC921433

Overview
NameFC921433
Unique NameFC921433
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921433 vs. ExPASy Swiss-Prot
Match: METN1_BURPS (Methionine import ATP-binding protein metN 1 OS=Burkholderia pseudomallei GN=metN1 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.407e-27
Identity = 83/218 (38.07%), Postives = 122/218 (55.96%), Query Frame = 3
Query:   15 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 662
            L  V+  I  GE  GIIG SG GKST+++ I  L  P +G V++ GR    L S  E+ G R  IG++FQ   L  S TV +NV   L E + ++  QI   V   L  VGL   +DR P+++SGG K+RV +AR++       + +P+VLL DE T+ LDP  +  + DL+R +++  E GL       + V++THQ   I+   DR+  L  G++V
Sbjct:   21 LHNVNLTIPQGEVFGIIGRSGAGKSTLVRTINLLTRPSEGSVFVGGRDLTQL-SAAELRGARRDIGMIFQHFNLLSSRTVFDNVALPL-ELAGVKRAQIEATVLPLLDLVGLAAQKDRYPAQISGGQKQRVGIARAL-------ASKPKVLLSDEATSALDPETTRAILDLLRRINR--ELGL-------TIVLITHQMEVIKDVCDRVAVLDAGRVV 220          
BLAST of FC921433 vs. ExPASy Swiss-Prot
Match: METN1_BURP1 (Methionine import ATP-binding protein metN 1 OS=Burkholderia pseudomallei (strain 1710b) GN=metN1 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.407e-27
Identity = 83/218 (38.07%), Postives = 122/218 (55.96%), Query Frame = 3
Query:   15 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 662
            L  V+  I  GE  GIIG SG GKST+++ I  L  P +G V++ GR    L S  E+ G R  IG++FQ   L  S TV +NV   L E + ++  QI   V   L  VGL   +DR P+++SGG K+RV +AR++       + +P+VLL DE T+ LDP  +  + DL+R +++  E GL       + V++THQ   I+   DR+  L  G++V
Sbjct:   21 LHNVNLTIPQGEVFGIIGRSGAGKSTLVRTINLLTRPSEGSVFVGGRDLTQL-SAAELRGARRDIGMIFQHFNLLSSRTVFDNVALPL-ELAGVKRAQIEATVLPLLDLVGLAAQKDRYPAQISGGQKQRVGIARAL-------ASKPKVLLSDEATSALDPETTRAILDLLRRINR--ELGL-------TIVLITHQMEVIKDVCDRVAVLDAGRVV 220          
BLAST of FC921433 vs. ExPASy Swiss-Prot
Match: METN1_BURMA (Methionine import ATP-binding protein metN 1 OS=Burkholderia mallei GN=metN1 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.407e-27
Identity = 83/218 (38.07%), Postives = 122/218 (55.96%), Query Frame = 3
Query:   15 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 662
            L  V+  I  GE  GIIG SG GKST+++ I  L  P +G V++ GR    L S  E+ G R  IG++FQ   L  S TV +NV   L E + ++  QI   V   L  VGL   +DR P+++SGG K+RV +AR++       + +P+VLL DE T+ LDP  +  + DL+R +++  E GL       + V++THQ   I+   DR+  L  G++V
Sbjct:   21 LHNVNLTIPQGEVFGIIGRSGAGKSTLVRTINLLTRPSEGSVFVGGRDLTQL-SAAELRGARRDIGMIFQHFNLLSSRTVFDNVALPL-ELAGVKRAQIEATVLPLLDLVGLAAQKDRYPAQISGGQKQRVGIARAL-------ASKPKVLLSDEATSALDPETTRAILDLLRRINR--ELGL-------TIVLITHQMEVIKDVCDRVAVLDAGRVV 220          
BLAST of FC921433 vs. ExPASy Swiss-Prot
Match: PSTB_AERPE (Phosphate import ATP-binding protein pstB OS=Aeropyrum pernix GN=pstB PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.098e-26
Identity = 84/240 (35.00%), Postives = 136/240 (56.67%), Query Frame = 3
Query:    3 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL-----APDKGEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENV--GFLLYENSKMRDEQISELVKENLAAVGL-KGVEDRL---PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQXMTHE 683
            +KHIL+G+SFK + G    I+GPSG+GKST++++I  L+     A  +GEV+I        +  E+   +R   G+VFQ    F  +T+ ENV  G  L+  +K + E + E+V+  L    L   V+DRL   P +LSGG ++R++LAR++       +++P VLL DEPTA +DP+++  +E  I    K+          +A+ ++VTH      R  D+++FLYEG+++    T E
Sbjct:   17 DKHILKGISFKAQPGTVTAIMGPSGSGKSTLIRVINRLIDLIPGARVEGEVWINNMN----VMKEDPYNIRRYTGMVFQEPNPFPHMTIYENVAIGPKLHGLAKNKKE-LDEIVEWALKMAHLWDEVKDRLSDYPHQLSGGQRQRLSLARAL-------ALKPRVLLLDEPTANIDPVSTVKIEQSIVEYAKE---------EMATVIIVTHTPQQAARISDQILFLYEGRVIEYGPTKE 235          
BLAST of FC921433 vs. ExPASy Swiss-Prot
Match: METN_RHOFD (Methionine import ATP-binding protein metN OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=metN PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.098e-26
Identity = 78/219 (35.62%), Postives = 127/219 (57.99%), Query Frame = 3
Query:   15 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGL-ISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQ 668
            L+GV+ ++R GE  G+IG SG GKS+++++I  L  P +G+V++ G +   L  S    +  +IG++FQ   L  S TV +NV   L E S +R   I   V E L  VGL  + +R P+++SGG K+RV +AR++       + +P+VLL DE T+ LDP  +  +  L+R +++  + GL       + V++THQ   I++  DR+  +  G+IV Q
Sbjct:   21 LQGVNLQVRAGEVFGVIGRSGAGKSSLIRVINLLNRPSQGQVHVAGAELTALSASALRAARHQIGMIFQHFNLLSSRTVFDNVALPL-ELSGVRPALIRARVDELLDLVGLSALRERYPAQISGGQKQRVGIARAL-------ASKPKVLLSDEATSALDPETTRSILGLLRQINR--DFGL-------TIVLITHQMQVIKQVADRVAVIDAGRIVEQ 222          
BLAST of FC921433 vs. ExPASy Swiss-Prot
Match: CYSA_XANAC (Sulfate/thiosulfate import ATP-binding protein cysA OS=Xanthomonas axonopodis pv. citri GN=cysA PE=3 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.098e-26
Identity = 80/218 (36.70%), Postives = 120/218 (55.05%), Query Frame = 3
Query:   15 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYE---NSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 659
            L  +  ++R GE + ++GPSG+GK+T+L+I+AGL   D G+V   G + A  +S   +   R+G VFQ  ALF  + V EN+ F L     N++  + +I   V+E LA V L+G+E R P++LSGG ++RVALAR++       ++EP VLL DEP   LD      +   +R +H++   GL         V VTH         DR+  L  G+I
Sbjct:   18 LDNIDLEVRQGELLALLGPSGSGKTTLLRIMAGLEHADGGQVLF-GDEDATRMS---VQSRRVGFVFQHYALFKHMDVFENIAFGLRVRRGNARWAEARIRARVEELLALVQLQGLEQRYPTQLSGGQRQRVALARAL-------AIEPRVLLLDEPFGALDAQVRRDLRRWLRELHER--TGLTT-------VFVTHDQEEALELADRVAILNRGRI 215          
BLAST of FC921433 vs. ExPASy Swiss-Prot
Match: GLNQ_ECOLI (Glutamine transport ATP-binding protein glnQ OS=Escherichia coli (strain K12) GN=glnQ PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.434e-26
Identity = 77/216 (35.65%), Postives = 116/216 (53.70%), Query Frame = 3
Query:   12 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 659
            +L  +   I  GE V IIGPSG+GKST+L+ I  L     G++ + G K      DE +     G+VFQ   LF  LT  ENV F          E+  +L +E LA VGL       PSELSGG ++RVA+AR++       +V+P+++L+DEPT+ LDP    +  ++++ +    E G+       + V+VTH+     +   RLIF+ +G+I
Sbjct:   16 VLHNIDLNIAQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGANKEEAEKLARELLAKVGLAERAHHYPSELSGGQQQRVAIARAL-------AVKPKMMLFDEPTSALDP---ELRHEVLKVMQDLAEEGM-------TMVIVTHEIGFAEKVASRLIFIDKGRI 214          
BLAST of FC921433 vs. ExPASy Swiss-Prot
Match: CYSA1_AGRT5 (Sulfate/thiosulfate import ATP-binding protein cysA 1 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=cysA1 PE=3 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.434e-26
Identity = 78/218 (35.78%), Postives = 117/218 (53.67%), Query Frame = 3
Query:   15 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLY---ENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 659
            L  VS  IR GE + ++GPSG+GK+T+L++IAGL  P +G+++  G + A   S   +    +G VFQ  ALF  +TV +N+ F L      S+    +I   V E L  V L G+E R P++LSGG ++RVALAR++       ++EP+VLL DEP   LD      +   +R  H +  +         + V VTH         DR++ + +GKI
Sbjct:   18 LNDVSLDIRSGELIALLGPSGSGKTTLLRLIAGLEQPTQGQIFF-GDEDA---SHRTVQERNVGFVFQHYALFRHMTVADNIAFGLKVRPSASRPPKAEIRRRVSELLDMVHLTGLEKRYPTQLSGGQRQRVALARAV-------AIEPKVLLLDEPFGALDAKVRKELRRWLREFHDRTGH---------TTVFVTHDQEEALELADRVVVMSQGKI 215          
BLAST of FC921433 vs. ExPASy Swiss-Prot
Match: POTA_LISMF (Spermidine/putrescine import ATP-binding protein potA OS=Listeria monocytogenes serotype 4b (strain F2365) GN=potA PE=3 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.873e-26
Identity = 80/216 (37.04%), Postives = 120/216 (55.56%), Query Frame = 3
Query:   12 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 659
            +L  VSF+I  G+   ++GPSG GK+TIL++IAG L   +G++Y+  +    +I+    +   +  VFQ  ALF  L V ENV F L    K++ + I E VKE L  V LKG E R  SE+SGG ++RVA+AR+I+        EPEV+L DEP + LD    T ++  +R + K+   G+       +++ VTH         D +  L +G+I
Sbjct:   23 VLDNVSFEIEKGKFYTLLGPSGCGKTTILRLIAGFLEASEGQIYLGDK----VINQIPANKRPVNTVFQDYALFPHLNVYENVAFGL-RIKKLKKDAIDEKVKEALRFVNLKGYEKREISEMSGGQRQRVAIARAIV-------NEPEVILLDEPLSALDLKLRTEMQYELRDLQKR--LGI-------TFIFVTHDQEEALAMSDEIFVLNKGEI 217          
BLAST of FC921433 vs. ExPASy Swiss-Prot
Match: METN_RALEJ (Methionine import ATP-binding protein metN OS=Ralstonia eutropha (strain JMP134) GN=metN PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.873e-26
Identity = 82/221 (37.10%), Postives = 121/221 (54.75%), Query Frame = 3
Query:    3 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 662
            E H LR VS  I  GE  GIIG SG GKST+++ I  L  P  G V + G+    L +    ++   IG++FQ   L  S TV +NV   L    K + E I   V   L  VGL  ++DR PS++SGG K+RV +AR++       + +P+VLL DE T+ LDP  +  + DL++ +++  E GL       + V++THQ   I++  DR+  L  G++V
Sbjct:   17 EVHALRDVSLSIGAGEVFGIIGRSGAGKSTLVRAINLLNRPTSGRVIVGGQDLTALDNGALRLARRDIGMIFQHFNLLSSRTVFDNVALPLELAGKTKSE-IEATVLPLLDLVGLSVLKDRYPSQISGGQKQRVGIARAL-------ASKPKVLLSDEATSALDPETTRSILDLLKQINR--ELGL-------TIVMITHQMEVIKQVCDRVAVLEAGRVV 220          
The following BLAST results are available for this feature:
BLAST of FC921433 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METN1_BURPS8.407e-2738.07Methionine import ATP-binding protein metN 1 OS=Bu... [more]
METN1_BURP18.407e-2738.07Methionine import ATP-binding protein metN 1 OS=Bu... [more]
METN1_BURMA8.407e-2738.07Methionine import ATP-binding protein metN 1 OS=Bu... [more]
PSTB_AERPE1.098e-2635.00Phosphate import ATP-binding protein pstB OS=Aerop... [more]
METN_RHOFD1.098e-2635.62Methionine import ATP-binding protein metN OS=Rhod... [more]
CYSA_XANAC1.098e-2636.70Sulfate/thiosulfate import ATP-binding protein cys... [more]
GLNQ_ECOLI1.434e-2635.65Glutamine transport ATP-binding protein glnQ OS=Es... [more]
CYSA1_AGRT51.434e-2635.78Sulfate/thiosulfate import ATP-binding protein cys... [more]
POTA_LISMF1.873e-2637.04Spermidine/putrescine import ATP-binding protein p... [more]
METN_RALEJ1.873e-2637.10Methionine import ATP-binding protein metN OS=Rals... [more]

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Properties
Property NameValue
Genbank descriptionC32104H07EF RVDevelopN Citrus clementina cDNA clone C32104H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921433 ID=FC921433; Name=FC921433; organism=Citrus clementina; type=EST; length=703bp
GGGAAAAGCATATATTGAGAGGTGTGAGCTTCAAGATTAGACATGGTGAA
GCTGTTGGTATAATAGGGCCTTCAGGCACTGGGAAATCAACGATTTTAAA
GATTATTGCTGGGCTTCTTGCTCCAGACAAGGGAGAGGTTTACATTCGAG
GTAGGAAGAGAGCTGGTTTGATTAGCGATGAGGAGATATCTGGTCTTCGG
ATTGGATTGGTTTTCCAAAGTGCGGCTCTTTTTGACTCATTGACTGTCCG
GGAAAATGTTGGTTTCCTTCTGTATGAAAATTCGAAGATGCGTGATGAAC
AAATTTCAGAGCTTGTGAAGGAAAATTTGGCTGCTGTTGGATTAAAGGGA
GTTGAGGATCGCTTACCATCTGAGTTGTCTGGTGGAATGAAGAAAAGAGT
TGCTTTAGCTCGATCCATAATTTTCGATAACACAAAGGAATCAGTGGAGC
CAGAGGTGCTGTTGTATGATGAACCTACGGCTGGCCTTGATCCCATTGCA
TCCACTGTAGTTGAAGATCTGATCCGTTCCGTTCATAAGAAAGGTGAAAA
TGGACTTGCGAACCCTGGTAATATTGCTTCCTACGTGGTTGTTACTCACC
AACATAGTACCATTAGAAGAGCTGTTGACAGGTTGATATTCCTCTACGAG
GGTAAGATTGTTTGGCAGGNAATGACCCATGAATTCACATCATCATCCAA
TCC
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