FC921463

Overview
NameFC921463
Unique NameFC921463
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921463 vs. ExPASy Swiss-Prot
Match: MDHC_MOUSE (Malate dehydrogenase, cytoplasmic OS=Mus musculus GN=Mdh1 PE=1 SV=3)

HSP 1 Score: 233.802 bits (595), Expect = 6.984e-61
Identity = 117/198 (59.09%), Postives = 146/198 (73.74%), Query Frame = 2
Query:  104 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCEVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 697
            EP+RVLVTGAAGQI Y+L+  I  G + G DQP+IL +LDI P    L+GV MEL D A PLL+ V+AT     A   +++AV+VG  PR+EGMERKD++  NV I+K+Q +ALE++A  + +V+VV NPANTN L   + APSIP +N +CLTRLDHNRA  QI+ KL V   DVKNVIIWGNHSS+QYPDVNHA V
Sbjct:    3 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLQDVIATDKEEIAFKDLDVAVLVGSMPRREGMERKDLLKANVKIFKSQGTALEKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKSQIALKLGVTADDVKNVIIWGNHSSTQYPDVNHAKV 200          
BLAST of FC921463 vs. ExPASy Swiss-Prot
Match: MDHC_CHICK (Malate dehydrogenase, cytoplasmic OS=Gallus gallus GN=MDH1 PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 9.122e-61
Identity = 116/199 (58.29%), Postives = 148/199 (74.37%), Query Frame = 2
Query:  104 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCEVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 700
            EP+RVLVTGAAGQI Y+L+  IA+G + G +QP++L +LDI P    L GV MEL D A PLL+ V+ T     A   ++IA++VG  PR+EGMERKD++  NV I+K+Q +AL+++A    +V+VV NPANTN LI  + APSIP +N +CLTRLDHNRA  QI+ KL V  +DVKNVIIWGNHSS+QYPDVNHA VN
Sbjct:    3 EPIRVLVTGAAGQIAYSLLYSIAKGDVFGKEQPLVLVLLDITPMMTVLEGVVMELQDCALPLLREVIPTDKEEVAFKDLDIAILVGSMPRREGMERKDLLKANVKIFKSQGAALDKYAKKTVKVVVVGNPANTNCLIASKSAPSIPKENFSCLTRLDHNRAKSQIALKLGVTSNDVKNVIIWGNHSSTQYPDVNHAKVN 201          
BLAST of FC921463 vs. ExPASy Swiss-Prot
Match: MDHC_PIG (Malate dehydrogenase, cytoplasmic OS=Sus scrofa GN=MDH1 PE=1 SV=4)

HSP 1 Score: 232.261 bits (591), Expect = 2.032e-60
Identity = 116/202 (57.43%), Postives = 146/202 (72.28%), Query Frame = 2
Query:  104 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCEVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAA 709
            EP+RVLVTGAAGQI Y+L+  I  G + G DQP+IL +LDI P    L+GV MEL D A PLLK V+AT     A   +++A++VG  PR++GMERKD++  NV I+K Q +AL+++A  + +V+VV NPANTN L   + APSIP +N +CLTRLDHNRA  QI+ KL V   DVKNVIIWGNHSS+QYPDVNHA V   A
Sbjct:    3 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQA 204          
BLAST of FC921463 vs. ExPASy Swiss-Prot
Match: MDHC_BOVIN (Malate dehydrogenase, cytoplasmic OS=Bos taurus GN=MDH1 PE=2 SV=3)

HSP 1 Score: 231.491 bits (589), Expect = 3.466e-60
Identity = 115/198 (58.08%), Postives = 145/198 (73.23%), Query Frame = 2
Query:  104 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCEVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 697
            EP+RVLVTGAAGQI Y+L+  I  G + G DQP+IL +LDI P    L+GV MEL D A PLLK V+AT     A   +++A++VG  PR++GMERKD++  NV I+K Q +AL+++A  + +V+VV NPANTN L   + APSIP +N +CLTRLDHNRA  QI+ KL V   DVKNVIIWGNHSS+QYPDVNHA V
Sbjct:    3 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKV 200          
BLAST of FC921463 vs. ExPASy Swiss-Prot
Match: MDHC_FELCA (Malate dehydrogenase, cytoplasmic OS=Felis catus GN=MDH1 PE=2 SV=3)

HSP 1 Score: 229.565 bits (584), Expect = 1.317e-59
Identity = 115/198 (58.08%), Postives = 145/198 (73.23%), Query Frame = 2
Query:  104 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCEVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 697
            EP+RVLVTGAAGQI Y+L+  I  G + G DQP+IL +LDI P    L+GV MEL D A PLLK V+AT     A   +++A++VG  PR++GMERKD++  NV I+K Q +ALE++A  + +V+VV NPANTN L   + APSIP +N +CLTRLDHNRA  QI+ KL V   DVKNVIIWGNHSS+QYPDV+HA V
Sbjct:    3 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEDVAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALEKYAKKSVKVIVVGNPANTNCLTACKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVSHAKV 200          
BLAST of FC921463 vs. ExPASy Swiss-Prot
Match: MDHC_XENLA (Malate dehydrogenase, cytoplasmic OS=Xenopus laevis GN=mdh1 PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.247e-59
Identity = 115/198 (58.08%), Postives = 147/198 (74.24%), Query Frame = 2
Query:  104 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCEVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 697
            EPV+VLVTGAAGQI Y+L+  IA+G + G DQP+IL +LDI P    L GV MEL D A PLLK V+AT     A   +++A++VG  PR+EGMERKD++  NV I+K+Q +AL +++  + +V+VV NPANTN L   + APSIP +N +CLTRLDHNRA  QI+ KLNV   DVKNVIIWGNHSS+QYPD +HA+V
Sbjct:    3 EPVKVLVTGAAGQIAYSLLFGIAKGDVFGKDQPLILVLLDITPMMTVLEGVVMELQDCALPLLKEVIATDKEDVAFKDLDVAILVGSMPRREGMERKDLLKANVKIFKSQGAALNKYSKKSVKVIVVGNPANTNCLTALKSAPSIPKENFSCLTRLDHNRAKAQIALKLNVASDDVKNVIIWGNHSSTQYPDASHASV 200          
BLAST of FC921463 vs. ExPASy Swiss-Prot
Match: MDHC_ECHGR (Malate dehydrogenase, cytoplasmic OS=Echinococcus granulosus GN=MDH PE=2 SV=2)

HSP 1 Score: 227.639 bits (579), Expect = 5.005e-59
Identity = 111/197 (56.35%), Postives = 145/197 (73.60%), Query Frame = 2
Query:  107 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCEVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 697
            P+RVL+TGAAGQI Y L  M+A G + G DQ +ILH+LDIP A   L+GV MEL D AF +L G+V T    EA T +++A+MVG  PRK+GMER+D++S NV I+K Q  AL+++A    +VLVV NPANTN LI+ ++APSIP +N T LTRLDHNRA+ Q++ K  V  + VKNV IWGNHS+ Q+PD++HA V
Sbjct:    4 PLRVLITGAAGQIAYNLSNMVANGNLFGKDQQIILHLLDIPEAKTVLDGVVMELQDCAFTVLAGIVPTHCLKEAFTDIDVALMVGAMPRKQGMERRDLLSSNVKIFKEQGEALDKYAKKTVKVLVVGNPANTNCLIMSKYAPSIPKENFTALTRLDHNRAIYQVAAKAGVPNTCVKNVCIWGNHSNKQFPDLSHAVV 200          
BLAST of FC921463 vs. ExPASy Swiss-Prot
Match: MDH_DEIRA (Malate dehydrogenase OS=Deinococcus radiodurans GN=mdh PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 8.538e-59
Identity = 117/200 (58.50%), Postives = 144/200 (72.00%), Query Frame = 2
Query:  101 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCEVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 700
            K+PVRV VTGAAGQIGY+L+  IA G MLG DQPVIL +L+I PA +ALNGV MEL D AFPLL  V+ + D + A    + A++VG  PRK GMER D++  N  I+K Q  AL   A+ N +VLVV NPANTNALI ++ AP +  K  T + RLDHNRAL Q++EK    VSD+KNV IWGNHSS+QYPD++ ATVN
Sbjct:    4 KQPVRVAVTGAAGQIGYSLLFRIAAGDMLGQDQPVILQLLEITPALKALNGVVMELRDGAFPLLADVITSDDPMVAFKDADYALLVGAMPRKAGMERGDLLGANGGIFKPQGEALGAVASRNVKVLVVGNPANTNALIAQQNAPDLDPKCFTAMVRLDHNRALSQLAEKTGAAVSDIKNVTIWGNHSSTQYPDLSQATVN 203          
BLAST of FC921463 vs. ExPASy Swiss-Prot
Match: MDH_THEFY (Malate dehydrogenase OS=Thermobifida fusca (strain YX) GN=mdh PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.902e-58
Identity = 116/202 (57.43%), Postives = 142/202 (70.30%), Query Frame = 2
Query:   95 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCEVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 700
            MAK PV V VTGAAGQIGYAL+  IA G +LG D PV L +L+IP A +A  G  MEL D AFPLL GV    D  +A  GVN+A++VG  PR +GMER+D++  N  I+  Q +A+   AA +  VLVV NPANTNALI +  AP IPA   T +TRLDHNRAL Q++ KLNV VSD+K + IWGNHS++QYPD+ HA VN
Sbjct:    1 MAKAPVNVTVTGAAGQIGYALLFRIASGQLLGVDTPVRLRLLEIPQAIKAAEGTAMELDDCAFPLLAGVDIYDDPRKAFDGVNVALLVGARPRTKGMERRDLLEANGGIFGPQGAAINDGAADDVRVLVVGNPANTNALIAQAHAPDIPADRFTAMTRLDHNRALSQLAAKLNVSVSDIKKLTIWGNHSATQYPDIFHAEVN 202          
BLAST of FC921463 vs. ExPASy Swiss-Prot
Match: MDH_PSYWF (Malate dehydrogenase OS=Psychrobacter sp. (strain PRwf-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 3.244e-58
Identity = 114/200 (57.00%), Postives = 143/200 (71.50%), Query Frame = 2
Query:  101 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCEVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 700
            K+PVRV VTGAAG I YA++  IA G MLG DQPVIL +L+I PA +AL GV MEL D AFPLL GVV T DA  A    + A++VG  PR  GMERKD++  N +I+ AQ  AL + A+ + +VLVV NPANTNALI +  AP +  +N T +TRLDHNR + Q++E+ N  V+DVK +IIWGNHSS+QYPD+   TVN
Sbjct:    2 KQPVRVAVTGAAGNISYAMLFRIASGEMLGKDQPVILQLLEITPALDALKGVVMELEDCAFPLLAGVVQTDDATVAFKDADYALLVGARPRGPGMERKDLLEANAAIFSAQGKALNEVASRDVKVLVVGNPANTNALIAQRNAPDLDPRNFTAMTRLDHNRGMAQLAEETNSTVNDVKKMIIWGNHSSTQYPDLTECTVN 201          
The following BLAST results are available for this feature:
BLAST of FC921463 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
MDHC_MOUSE6.984e-6159.09Malate dehydrogenase, cytoplasmic OS=Mus musculus ... [more]
MDHC_CHICK9.122e-6158.29Malate dehydrogenase, cytoplasmic OS=Gallus gallus... [more]
MDHC_PIG2.032e-6057.43Malate dehydrogenase, cytoplasmic OS=Sus scrofa GN... [more]
MDHC_BOVIN3.466e-6058.08Malate dehydrogenase, cytoplasmic OS=Bos taurus GN... [more]
MDHC_FELCA1.317e-5958.08Malate dehydrogenase, cytoplasmic OS=Felis catus G... [more]
MDHC_XENLA2.247e-5958.08Malate dehydrogenase, cytoplasmic OS=Xenopus laevi... [more]
MDHC_ECHGR5.005e-5956.35Malate dehydrogenase, cytoplasmic OS=Echinococcus ... [more]
MDH_DEIRA8.538e-5958.50Malate dehydrogenase OS=Deinococcus radiodurans GN... [more]
MDH_THEFY1.902e-5857.43Malate dehydrogenase OS=Thermobifida fusca (strain... [more]
MDH_PSYWF3.244e-5857.00Malate dehydrogenase OS=Psychrobacter sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC32105C04EF RVDevelopN Citrus clementina cDNA clone C32105C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921463 ID=FC921463; Name=FC921463; organism=Citrus clementina; type=EST; length=709bp
GACTTCATCCACTATCACTCCATCGAAGTTCTCCTTCTCTCGCTTTACTG
GAAAAATCTTTTCGTTTCCTGTGATACATCTCTGATCCGAACTAATGGCC
AAGGAACCAGTTCGCGTTCTCGTCACCGGCGCCGCAGGGCAAATTGGATA
TGCACTTGTCCCCATGATTGCTAGGGGAGTGATGTTGGGTACTGACCAGC
CTGTGATTCTGCACATGCTTGATATCCCACCCGCAGCAGAGGCATTGAAT
GGTGTGAAGATGGAGTTGGTTGATGCTGCATTCCCTCTTCTTAAAGGTGT
TGTTGCTACAACTGATGCTGTTGAGGCATGCACTGGGGTCAATATTGCCG
TTATGGTTGGTGGCTTTCCAAGAAAAGAAGGAATGGAGAGAAAAGATGTG
ATGTCAAAGAACGTTTCAATCTACAAGGCTCAGGCTTCTGCCCTGGAGCA
GCACGCAGCTCCGAACTGCGAGGTTCTAGTTGTCGCTAACCCTGCAAACA
CCAATGCATTGATTCTGAAAGAATTTGCGCCATCAATCCCTGCTAAGAAC
ATTACATGCTTGACCAGATTGGATCATAACAGGGCATTGGGACAAATATC
TGAGAAACTGAATGTCCAAGTATCTGATGTTAAGAATGTGATTATTTGGG
GAAATCATTCATCATCTCAGTACCCTGATGTCAACCATGCAACTGTCAAT
ACTGCAGCT
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