FC921463

Overview
NameFC921463
Unique NameFC921463
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC921463 vs. ExPASy Swiss-Prot
Match: MDH_CAUCR (Malate dehydrogenase OS=Caulobacter crescentus GN=mdh PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.658e-11
Identity = 52/188 (27.66%), Postives = 82/188 (43.62%), Query Frame = 2 
Query:  134 AGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCEVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 697
            AG IG  L  + AR  +      ++  + +  P  +AL+  +   V      LKG     D      G ++ ++  G PRK GM R D++  N+ + KA    ++ HA PN  V+ + NP +     L++F+     K I     LD  R    ++E   V V D+ +    G H     P V H+TV
Sbjct:   11 AGMIGGTLAHIAAREEL---GDVILFDIAEGTPQGKALDIAEASAVFGKDVALKGANDYADIA----GADVCIVTAGVPRKPGMSRDDLLGINLKVMKAVGEGIKAHA-PNAFVICITNPLDAMVWALQQFSGLPKEKVIGMAGVLDSARFAYFLAEATGVSVEDI-HAWTLGGHGDDMVPMVRHSTV 189
[Close]
BLAST of FC921463 vs. ExPASy Swiss-Prot
Match: MDH_CAUCN (Malate dehydrogenase OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=mdh PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.658e-11
Identity = 52/188 (27.66%), Postives = 82/188 (43.62%), Query Frame = 2 
Query:  134 AGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCEVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 697
            AG IG  L  + AR  +      ++  + +  P  +AL+  +   V      LKG     D      G ++ ++  G PRK GM R D++  N+ + KA    ++ HA PN  V+ + NP +     L++F+     K I     LD  R    ++E   V V D+ +    G H     P V H+TV
Sbjct:   11 AGMIGGTLAHIAAREEL---GDVILFDIAEGTPQGKALDIAEASAVFGKDVALKGANDYADIA----GADVCIVTAGVPRKPGMSRDDLLGINLKVMKAVGEGIKAHA-PNAFVICITNPLDAMVWALQQFSGLPKEKVIGMAGVLDSARFAYFLAEATGVSVEDI-HAWTLGGHGDDMVPMVRHSTV 189
The following BLAST results are available for this feature:
BLAST of FC921463 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
MDH_CAUCR8.658e-1127.66Malate dehydrogenase OS=Caulobacter crescentus GN=... [more]
MDH_CAUCN8.658e-1127.66Malate dehydrogenase OS=Caulobacter crescentus (st... [more]

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Properties
Property NameValue
Genbank descriptionC32105C04EF RVDevelopN Citrus clementina cDNA clone C32105C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921463 ID=FC921463; Name=FC921463; organism=Citrus clementina; type=EST; length=709bp
GACTTCATCCACTATCACTCCATCGAAGTTCTCCTTCTCTCGCTTTACTG
GAAAAATCTTTTCGTTTCCTGTGATACATCTCTGATCCGAACTAATGGCC
AAGGAACCAGTTCGCGTTCTCGTCACCGGCGCCGCAGGGCAAATTGGATA
TGCACTTGTCCCCATGATTGCTAGGGGAGTGATGTTGGGTACTGACCAGC
CTGTGATTCTGCACATGCTTGATATCCCACCCGCAGCAGAGGCATTGAAT
GGTGTGAAGATGGAGTTGGTTGATGCTGCATTCCCTCTTCTTAAAGGTGT
TGTTGCTACAACTGATGCTGTTGAGGCATGCACTGGGGTCAATATTGCCG
TTATGGTTGGTGGCTTTCCAAGAAAAGAAGGAATGGAGAGAAAAGATGTG
ATGTCAAAGAACGTTTCAATCTACAAGGCTCAGGCTTCTGCCCTGGAGCA
GCACGCAGCTCCGAACTGCGAGGTTCTAGTTGTCGCTAACCCTGCAAACA
CCAATGCATTGATTCTGAAAGAATTTGCGCCATCAATCCCTGCTAAGAAC
ATTACATGCTTGACCAGATTGGATCATAACAGGGCATTGGGACAAATATC
TGAGAAACTGAATGTCCAAGTATCTGATGTTAAGAATGTGATTATTTGGG
GAAATCATTCATCATCTCAGTACCCTGATGTCAACCATGCAACTGTCAAT
ACTGCAGCT
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