FC921463

Overview
NameFC921463
Unique NameFC921463
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921463 vs. ExPASy Swiss-Prot
Match: MDH_RALSO (Malate dehydrogenase OS=Ralstonia solanacearum GN=mdh PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.332e-54
Identity = 110/204 (53.92%), Postives = 140/204 (68.63%), Query Frame = 2
Query:   95 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCEVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 700
            MAK P+RV VTGAAGQIGYAL+  IA G MLG DQPVIL +L+IP   A +AL GV ME+ D AFPLL G+ A  D + A   V++A++VG  PR  GMERKD++S N  I+ AQ  AL   A+ N +VLVV NPANTNA I  + AP +P +N T + RLDHNRAL QI+ K    VS ++ + +WGNHS + Y D  +AT++
Sbjct:    1 MAKAPMRVAVTGAAGQIGYALLFRIAAGEMLGKDQPVILQLLEIPDEKAQKALKGVMMEIEDCAFPLLAGMEAHADPMTAFKDVDVALLVGARPRGPGMERKDLLSANAQIFTAQGKALNAVASRNVKVLVVGNPANTNAYIAMKSAPDLPRENFTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYATID 204          
BLAST of FC921463 vs. ExPASy Swiss-Prot
Match: MDH_RALME (Malate dehydrogenase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=mdh PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.332e-54
Identity = 107/202 (52.97%), Postives = 139/202 (68.81%), Query Frame = 2
Query:   95 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCEVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 700
            MAK P+RV VTGAAGQIGY+L+  IA G MLG DQPVIL +LD+P A  A+ GV MEL D AFPLL GVV T D   A    ++A++VG  PR +GMERKD++  N  I+  Q  AL++ A+ + +VLVV NPANTNA I  + AP++  +N T + RLDHNRAL QI+ K    VS ++ + +WGNHS + Y D  +ATV+
Sbjct:    1 MAKAPMRVAVTGAAGQIGYSLLFRIANGDMLGKDQPVILQLLDLPQAQAAVKGVVMELEDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLEANAQIFTVQGKALDEVASRDVKVLVVGNPANTNAYIAMKSAPNLKRENFTAMLRLDHNRALSQIAAKTGKPVSSIEKMFVWGNHSPTMYADYRYATVD 202          
BLAST of FC921463 vs. ExPASy Swiss-Prot
Match: MDH_DELAS (Malate dehydrogenase OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.332e-54
Identity = 110/204 (53.92%), Postives = 139/204 (68.14%), Query Frame = 2
Query:   95 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCEVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 700
            M+K+PVRV VTGAAGQIGYAL+  IA G MLG DQPVIL +L+IP   A  AL GV MEL D AFPLL G+ A +D ++A    + A++VG  PR  GMER D+++ N  I+ AQ  AL   A+ N +VLVV NPANTNA I  + AP +PAKN T + RLDHNRA  Q++ K   +V D++ + +WGNHS + Y D   ATVN
Sbjct:    1 MSKKPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEIPDEKAQNALKGVIMELEDCAFPLLAGIEAHSDPLQAFKDTDYALLVGARPRGPGMERADLLAANAQIFTAQGKALNAVASRNVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLRLDHNRAASQLAAKAGFKVGDIRKLTVWGNHSPTMYADYRFATVN 204          
BLAST of FC921463 vs. ExPASy Swiss-Prot
Match: MDH_NITMU (Malate dehydrogenase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=mdh PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.080e-53
Identity = 106/200 (53.00%), Postives = 143/200 (71.50%), Query Frame = 2
Query:  101 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCEVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 700
            K P+RV VTGAAGQI Y+L+  IA G MLG DQPVIL +LDIP +  +L GV MEL D AFPLL+ +  T D   A   +NIA++VG  PR +GMERKD++  N +I++AQ  AL++ A  + +VLVV NPANTNA I  + APS+   + + + RLDHNRA+ Q++ K+   VS V+ +I+WGNHSS+QYPD++HA V+
Sbjct:    2 KTPIRVAVTGAAGQIAYSLLFRIAAGDMLGEDQPVILQLLDIPQSLPSLKGVVMELDDCAFPLLRDITITDDPKTAFRDINIAMLVGARPRTKGMERKDLLEANGTIFRAQGKALDEVAGRDVKVLVVGNPANTNAYITMKNAPSLKPTSFSSMMRLDHNRAVFQLAVKVGQPVSSVRKMIVWGNHSSAQYPDLSHAEVD 201          
BLAST of FC921463 vs. ExPASy Swiss-Prot
Match: MDH_BORPD (Malate dehydrogenase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=mdh PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.411e-53
Identity = 111/203 (54.68%), Postives = 140/203 (68.97%), Query Frame = 2
Query:   95 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCEVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 697
            M+K  +RV VTGAAGQIGYAL+  IA G MLG DQPVIL +L+IP   A +AL GV MEL D AFPLL+ V A +D   A    ++A++VG  PR  GMERKD++S N  I+ AQ  AL   A+ N +VLVV NPANTNA I  + AP +PAKN T + RLDHNRAL Q++ K    V+D++ +++WGNHS + YPD   ATV
Sbjct:    1 MSKPAMRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEIPDEKAQKALKGVIMELDDCAFPLLQEVTAHSDPRTAFKDADVALLVGARPRGPGMERKDLLSVNAQIFTAQGKALNDVASRNVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLRLDHNRALSQLAAKSGKAVADIEKLVVWGNHSPTMYPDYRFATV 203          
BLAST of FC921463 vs. ExPASy Swiss-Prot
Match: MDH_COXBU (Malate dehydrogenase OS=Coxiella burnetii GN=mdh PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.842e-53
Identity = 110/202 (54.46%), Postives = 136/202 (67.33%), Query Frame = 2
Query:   95 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCEVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 700
            MAK  V+V VTGAAGQIGYAL+  +A G   G D  V LH+L+I PA  AL GV MEL D AFPLL+ +V T+D   A   VN A++VG  PRK GMERKD++ KN SI+  Q  A+ ++AA +  + VV NP NTN LI    AP IP      +TRLD NRA+GQ++ K  V V  VKN+IIWGNHSS+QYPD  HAT++
Sbjct:    1 MAKH-VKVAVTGAAGQIGYALLFRLASGQAFGLDTTVDLHLLEIEPALPALKGVVMELEDCAFPLLRNMVVTSDPRVAFNDVNWALLVGAAPRKAGMERKDLLEKNGSIFAGQGKAINENAASDVRIFVVGNPCNTNCLIAMNNAPDIPKDRFYAMTRLDQNRAIGQLALKAGVDVPSVKNMIIWGNHSSTQYPDFYHATID 201          
BLAST of FC921463 vs. ExPASy Swiss-Prot
Match: MDH_COXBR (Malate dehydrogenase OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=mdh PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.842e-53
Identity = 110/202 (54.46%), Postives = 136/202 (67.33%), Query Frame = 2
Query:   95 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCEVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 700
            MAK  V+V VTGAAGQIGYAL+  +A G   G D  V LH+L+I PA  AL GV MEL D AFPLL+ +V T+D   A   VN A++VG  PRK GMERKD++ KN SI+  Q  A+ ++AA +  + VV NP NTN LI    AP IP      +TRLD NRA+GQ++ K  V V  VKN+IIWGNHSS+QYPD  HAT++
Sbjct:    1 MAKH-VKVAVTGAAGQIGYALLFRLASGQAFGLDTTVDLHLLEIEPALPALKGVVMELEDCAFPLLRNMVVTSDPRVAFNDVNWALLVGAAPRKAGMERKDLLEKNGSIFAGQGKAINENAASDVRIFVVGNPCNTNCLIAMNNAPDIPKDRFYAMTRLDQNRAIGQLALKAGVDVPSVKNMIIWGNHSSTQYPDFYHATID 201          
BLAST of FC921463 vs. ExPASy Swiss-Prot
Match: MDH_COXB2 (Malate dehydrogenase OS=Coxiella burnetii (strain CbuG_Q212) GN=mdh PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.842e-53
Identity = 110/202 (54.46%), Postives = 136/202 (67.33%), Query Frame = 2
Query:   95 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCEVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 700
            MAK  V+V VTGAAGQIGYAL+  +A G   G D  V LH+L+I PA  AL GV MEL D AFPLL+ +V T+D   A   VN A++VG  PRK GMERKD++ KN SI+  Q  A+ ++AA +  + VV NP NTN LI    AP IP      +TRLD NRA+GQ++ K  V V  VKN+IIWGNHSS+QYPD  HAT++
Sbjct:    1 MAKH-VKVAVTGAAGQIGYALLFRLASGQAFGLDTTVDLHLLEIEPALPALKGVVMELEDCAFPLLRNMVVTSDPRVAFNDVNWALLVGAAPRKAGMERKDLLEKNGSIFAGQGKAINENAASDVRIFVVGNPCNTNCLIAMNNAPDIPKDRFYAMTRLDQNRAIGQLALKAGVDVPSVKNMIIWGNHSSTQYPDFYHATID 201          
BLAST of FC921463 vs. ExPASy Swiss-Prot
Match: MDH_COXB1 (Malate dehydrogenase OS=Coxiella burnetii (strain CbuK_Q154) GN=mdh PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.842e-53
Identity = 110/202 (54.46%), Postives = 136/202 (67.33%), Query Frame = 2
Query:   95 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCEVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 700
            MAK  V+V VTGAAGQIGYAL+  +A G   G D  V LH+L+I PA  AL GV MEL D AFPLL+ +V T+D   A   VN A++VG  PRK GMERKD++ KN SI+  Q  A+ ++AA +  + VV NP NTN LI    AP IP      +TRLD NRA+GQ++ K  V V  VKN+IIWGNHSS+QYPD  HAT++
Sbjct:    1 MAKH-VKVAVTGAAGQIGYALLFRLASGQAFGLDTTVDLHLLEIEPALPALKGVVMELEDCAFPLLRNMVVTSDPRVAFNDVNWALLVGAAPRKAGMERKDLLEKNGSIFAGQGKAINENAASDVRIFVVGNPCNTNCLIAMNNAPDIPKDRFYAMTRLDQNRAIGQLALKAGVDVPSVKNMIIWGNHSSTQYPDFYHATID 201          
BLAST of FC921463 vs. ExPASy Swiss-Prot
Match: MDH_XANC5 (Malate dehydrogenase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=mdh PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.142e-53
Identity = 112/205 (54.63%), Postives = 139/205 (67.80%), Query Frame = 2
Query:  101 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP--PAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCEVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAA 709
            K PVRV VTGAAGQIGYAL+  IA G MLG DQPVIL +L++P   A  AL GV MEL D AFPLL G+V T DA  A   V+IA++VG  PR  GMERKD++  N  I+ AQ +AL + A  + +VLVV NPANTNA I  + AP +  KN T + RLDHNRAL Q+S KL   V+ ++ + +WGNHS + YPD   AT + A+
Sbjct:    2 KAPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLELPIEKAQAALKGVMMELEDCAFPLLAGMVGTDDAEVAFKDVDIALLVGSRPRGPGMERKDLLLANAEIFTAQGAALNKVAKRDVKVLVVGNPANTNAYIAMKSAPDLDPKNFTAMLRLDHNRALSQLSAKLGKPVAGIEKLAVWGNHSPTMYPDYRFATADGAS 206          
The following BLAST results are available for this feature:
BLAST of FC921463 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
MDH_RALSO6.332e-5453.92Malate dehydrogenase OS=Ralstonia solanacearum GN=... [more]
MDH_RALME6.332e-5452.97Malate dehydrogenase OS=Ralstonia metallidurans (s... [more]
MDH_DELAS6.332e-5453.92Malate dehydrogenase OS=Delftia acidovorans (strai... [more]
MDH_NITMU1.080e-5353.00Malate dehydrogenase OS=Nitrosospira multiformis (... [more]
MDH_BORPD1.411e-5354.68Malate dehydrogenase OS=Bordetella petrii (strain ... [more]
MDH_COXBU1.842e-5354.46Malate dehydrogenase OS=Coxiella burnetii GN=mdh P... [more]
MDH_COXBR1.842e-5354.46Malate dehydrogenase OS=Coxiella burnetii (strain ... [more]
MDH_COXB21.842e-5354.46Malate dehydrogenase OS=Coxiella burnetii (strain ... [more]
MDH_COXB11.842e-5354.46Malate dehydrogenase OS=Coxiella burnetii (strain ... [more]
MDH_XANC53.142e-5354.63Malate dehydrogenase OS=Xanthomonas campestris pv.... [more]

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Properties
Property NameValue
Genbank descriptionC32105C04EF RVDevelopN Citrus clementina cDNA clone C32105C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921463 ID=FC921463; Name=FC921463; organism=Citrus clementina; type=EST; length=709bp
GACTTCATCCACTATCACTCCATCGAAGTTCTCCTTCTCTCGCTTTACTG
GAAAAATCTTTTCGTTTCCTGTGATACATCTCTGATCCGAACTAATGGCC
AAGGAACCAGTTCGCGTTCTCGTCACCGGCGCCGCAGGGCAAATTGGATA
TGCACTTGTCCCCATGATTGCTAGGGGAGTGATGTTGGGTACTGACCAGC
CTGTGATTCTGCACATGCTTGATATCCCACCCGCAGCAGAGGCATTGAAT
GGTGTGAAGATGGAGTTGGTTGATGCTGCATTCCCTCTTCTTAAAGGTGT
TGTTGCTACAACTGATGCTGTTGAGGCATGCACTGGGGTCAATATTGCCG
TTATGGTTGGTGGCTTTCCAAGAAAAGAAGGAATGGAGAGAAAAGATGTG
ATGTCAAAGAACGTTTCAATCTACAAGGCTCAGGCTTCTGCCCTGGAGCA
GCACGCAGCTCCGAACTGCGAGGTTCTAGTTGTCGCTAACCCTGCAAACA
CCAATGCATTGATTCTGAAAGAATTTGCGCCATCAATCCCTGCTAAGAAC
ATTACATGCTTGACCAGATTGGATCATAACAGGGCATTGGGACAAATATC
TGAGAAACTGAATGTCCAAGTATCTGATGTTAAGAATGTGATTATTTGGG
GAAATCATTCATCATCTCAGTACCCTGATGTCAACCATGCAACTGTCAAT
ACTGCAGCT
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