FC921463

Overview
NameFC921463
Unique NameFC921463
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921463 vs. ExPASy Swiss-Prot
Match: MDH_RALPJ (Malate dehydrogenase OS=Ralstonia pickettii (strain 12J) GN=mdh PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.142e-53
Identity = 109/204 (53.43%), Postives = 140/204 (68.63%), Query Frame = 2
Query:   95 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCEVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 700
            MAK P+RV VTGAAGQIGYAL+  IA G MLG DQPVIL +L+IP   A +AL GV ME+ D AFPLL G+ A +D + A   V++A++VG  PR  GMER D++S N  I+ AQ  AL   A+ N +VLVV NPANTNA I  + AP +P +N T + RLDHNRAL QI+ K    VS ++ + +WGNHS + Y D  +AT++
Sbjct:    1 MAKAPMRVAVTGAAGQIGYALLFRIAAGEMLGKDQPVILQLLEIPDEKAQKALKGVMMEIEDCAFPLLAGMQAHSDPMTAFKDVDVALLVGARPRGPGMERADLLSANAQIFTAQGRALNAVASRNVKVLVVGNPANTNAYIAMKSAPDLPRENFTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYATID 204          
BLAST of FC921463 vs. ExPASy Swiss-Prot
Match: MDH1_RHOFD (Malate dehydrogenase 1 OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=mdh1 PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.142e-53
Identity = 107/204 (52.45%), Postives = 142/204 (69.61%), Query Frame = 2
Query:   95 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP--PAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCEVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 700
            M+K+PVRV VTGAAGQIGYA++  IA G MLG DQPVIL +L++P   A +AL GV MEL D AFPLL G+ A +D + A   V+ A+++G  PR  GMER ++++ N +I+ AQ  AL   A+ N +VLVV NPANTNA I  + AP +PAKN T + RLDHNRAL Q++ K    V+D++ + +WGNHS + Y D   AT+N
Sbjct:    1 MSKKPVRVAVTGAAGQIGYAILFRIASGEMLGKDQPVILQLLEVPVEKAQQALQGVMMELQDCAFPLLAGMEAHSDPMTAFKDVDYALLIGSRPRGPGMERAELLAVNGAIFTAQGKALNAVASRNVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLRLDHNRALSQLASKTGKAVADIEKMAVWGNHSPTMYADYRFATIN 204          
BLAST of FC921463 vs. ExPASy Swiss-Prot
Match: MDH_XANAC (Malate dehydrogenase OS=Xanthomonas axonopodis pv. citri GN=mdh PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.104e-53
Identity = 111/205 (54.15%), Postives = 139/205 (67.80%), Query Frame = 2
Query:  101 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP--PAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCEVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAA 709
            K PVRV VTGAAGQIGYAL+  IA G MLG DQPVIL +L++P   A  AL GV MEL D AFPLL G+V T DA  A   V++A++VG  PR  GMERKD++  N  I+ AQ +AL + A  + +VLVV NPANTNA I  + AP +  KN T + RLDHNRAL Q+S KL   V+ ++ + +WGNHS + YPD   AT + A+
Sbjct:    2 KAPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLELPIEKAQAALKGVMMELEDCAFPLLAGMVGTDDAEVAFKDVDVALLVGSRPRGPGMERKDLLLANAEIFTAQGAALNKVAKRDVKVLVVGNPANTNAYIAMKSAPDLDPKNFTAMLRLDHNRALSQLSAKLGKPVAGIEKLAVWGNHSPTMYPDYRFATADGAS 206          
BLAST of FC921463 vs. ExPASy Swiss-Prot
Match: MDH_DIAST (Malate dehydrogenase OS=Diaphorobacter sp. (strain TPSY) GN=mdh PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 5.360e-53
Identity = 110/204 (53.92%), Postives = 138/204 (67.65%), Query Frame = 2
Query:   95 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCEVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 700
            M+K+PVRV VTGAAGQIGYAL+  IA G MLG DQPVIL +L+IP   A  AL GV MEL D AFPLL G+ A +D + A    + A++VG  PR  GMER D+++ N  I+ AQ  AL   A+ N +VLVV NPANTNA I  + AP +PAKN T + RLDHNRA  Q++ K   +V D+K + +WGNHS + Y D   ATV+
Sbjct:    1 MSKKPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEIPDEKAQNALKGVIMELEDCAFPLLAGIEAHSDPMTAFKDTDYALLVGARPRGPGMERADLLAANAQIFTAQGKALNAVASRNVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLRLDHNRAASQLAAKGGFKVGDIKKLTVWGNHSPTMYADYRFATVD 204          
BLAST of FC921463 vs. ExPASy Swiss-Prot
Match: MDH_ACISJ (Malate dehydrogenase OS=Acidovorax sp. (strain JS42) GN=mdh PE=3 SV=2)

HSP 1 Score: 207.608 bits (527), Expect = 5.360e-53
Identity = 110/204 (53.92%), Postives = 138/204 (67.65%), Query Frame = 2
Query:   95 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCEVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 700
            M+K+PVRV VTGAAGQIGYAL+  IA G MLG DQPVIL +L+IP   A  AL GV MEL D AFPLL G+ A +D + A    + A++VG  PR  GMER D+++ N  I+ AQ  AL   A+ N +VLVV NPANTNA I  + AP +PAKN T + RLDHNRA  Q++ K   +V D+K + +WGNHS + Y D   ATV+
Sbjct:    1 MSKKPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEIPDEKAQNALKGVIMELEDCAFPLLAGIEAHSDPMTAFKDTDYALLVGARPRGPGMERADLLAANAQIFTAQGKALNAVASRNVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLRLDHNRAASQLAAKGGFKVGDIKKLTVWGNHSPTMYADYRFATVD 204          
BLAST of FC921463 vs. ExPASy Swiss-Prot
Match: MDH_STRMK (Malate dehydrogenase OS=Stenotrophomonas maltophilia (strain K279a) GN=mdh PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 7.001e-53
Identity = 110/205 (53.66%), Postives = 140/205 (68.29%), Query Frame = 2
Query:  101 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP--PAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCEVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAA 709
            K PVRV VTGAAGQIGYAL+  IA G MLG DQPVIL +L++P   A  AL GV MEL D AFPLL G+V T DA  A    +IA++VG  PR  GMERKD++ +N  I+ AQ +AL + A+ + +VLVV NPANTNA I  + AP +  +N T + RLDHNRAL Q+S KL   V  ++ +++WGNHS + YPD   AT + A+
Sbjct:    2 KAPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLELPVDKAQAALKGVMMELEDCAFPLLAGMVGTDDAEVAFKDADIALLVGARPRGPGMERKDLLLENAKIFTAQGAALNKVASRDVKVLVVGNPANTNAYIAMKSAPDLKPENFTAMLRLDHNRALSQLSTKLGKPVGGMEKLVVWGNHSPTMYPDYRFATADGAS 206          
BLAST of FC921463 vs. ExPASy Swiss-Prot
Match: MDH_STRM5 (Malate dehydrogenase OS=Stenotrophomonas maltophilia (strain R551-3) GN=mdh PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 7.001e-53
Identity = 110/205 (53.66%), Postives = 140/205 (68.29%), Query Frame = 2
Query:  101 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP--PAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCEVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAA 709
            K PVRV VTGAAGQIGYAL+  IA G MLG DQPVIL +L++P   A  AL GV MEL D AFPLL G+V T DA  A    +IA++VG  PR  GMERKD++ +N  I+ AQ +AL + A+ + +VLVV NPANTNA I  + AP +  +N T + RLDHNRAL Q+S KL   V  ++ +++WGNHS + YPD   AT + A+
Sbjct:    2 KAPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLELPVDKAQAALKGVMMELEDCAFPLLAGMVGTDDAEVAFKDADIALLVGARPRGPGMERKDLLLENAKIFTAQGAALNKVASRDVKVLVVGNPANTNAYIAMKSAPDLKPENFTAMLRLDHNRALSQLSAKLGKPVGGMEKLVVWGNHSPTMYPDYRFATADGAS 206          
BLAST of FC921463 vs. ExPASy Swiss-Prot
Match: MDH_JANMA (Malate dehydrogenase OS=Janthinobacterium sp. (strain Marseille) GN=mdh PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 7.001e-53
Identity = 107/204 (52.45%), Postives = 141/204 (69.12%), Query Frame = 2
Query:   95 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCEVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 700
            MAK P+RV VTGAAGQIGY+L+  IA G +LG DQPVIL +L+I    A +AL GV ME+ D AFPLL GV A +D + A    ++A++VG  PR  GMERKD++  N  I+  Q  AL+  A+ N +VLVV NPANTNA I  + AP++PAKN T + RLDHNRAL QI+ K++  V+ ++ + +WGNHS + YPD   AT +
Sbjct:    1 MAKAPMRVAVTGAAGQIGYSLLFRIANGDLLGKDQPVILQLLEIADEKAQKALKGVIMEIDDCAFPLLAGVTAHSDPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKALDAVASRNVKVLVVGNPANTNAYIAMKSAPNLPAKNFTAMLRLDHNRALSQIAAKISKPVTSIEKLTVWGNHSPTMYPDYRFATAD 204          
BLAST of FC921463 vs. ExPASy Swiss-Prot
Match: MDH_MYCUA (Malate dehydrogenase OS=Mycobacterium ulcerans (strain Agy99) GN=mdh PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 9.143e-53
Identity = 105/201 (52.24%), Postives = 139/201 (69.15%), Query Frame = 2
Query:   95 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCEVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 697
            M+  P++V VTGAAGQIGY+L+  +A G +LG D+P+ L +L+I PA +AL GV MEL D AFPLL GV   +DA +   G N+A++VG  PR  GMER D++  N +I+ AQ  AL + AA +  V V  NPANTNALI    AP IP +  + LTRLDHNRA+ Q++ K  V V+D+K + IWGNHS++QYPD+ HA V
Sbjct:    1 MSASPLKVAVTGAAGQIGYSLLFRLASGSLLGPDRPIELRLLEIEPALKALEGVVMELDDCAFPLLSGVEIGSDANKIFDGANLALLVGARPRGPGMERSDLLEANGAIFTAQGKALNEVAADDIRVGVTGNPANTNALIAMTNAPDIPRERFSALTRLDHNRAISQLAAKTGVAVTDIKKMTIWGNHSATQYPDLFHAEV 201          
BLAST of FC921463 vs. ExPASy Swiss-Prot
Match: MDH_MYCMM (Malate dehydrogenase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=mdh PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 9.143e-53
Identity = 105/201 (52.24%), Postives = 139/201 (69.15%), Query Frame = 2
Query:   95 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCEVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 697
            M+  P++V VTGAAGQIGY+L+  +A G +LG D+P+ L +L+I PA +AL GV MEL D AFPLL GV   +DA +   G N+A++VG  PR  GMER D++  N +I+ AQ  AL + AA +  V V  NPANTNALI    AP IP +  + LTRLDHNRA+ Q++ K  V V+D+K + IWGNHS++QYPD+ HA V
Sbjct:    1 MSASPLKVAVTGAAGQIGYSLLFRLASGSLLGPDRPIELRLLEIEPALKALEGVVMELDDCAFPLLSGVEIGSDANKIFDGANLALLVGARPRGPGMERSDLLEANGAIFTAQGKALNEVAADDIRVGVTGNPANTNALIAMTNAPDIPRERFSALTRLDHNRAISQLAAKTGVAVTDIKKMTIWGNHSATQYPDLFHAEV 201          
The following BLAST results are available for this feature:
BLAST of FC921463 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
MDH_RALPJ3.142e-5353.43Malate dehydrogenase OS=Ralstonia pickettii (strai... [more]
MDH1_RHOFD3.142e-5352.45Malate dehydrogenase 1 OS=Rhodoferax ferrireducens... [more]
MDH_XANAC4.104e-5354.15Malate dehydrogenase OS=Xanthomonas axonopodis pv.... [more]
MDH_DIAST5.360e-5353.92Malate dehydrogenase OS=Diaphorobacter sp. (strain... [more]
MDH_ACISJ5.360e-5353.92Malate dehydrogenase OS=Acidovorax sp. (strain JS4... [more]
MDH_STRMK7.001e-5353.66Malate dehydrogenase OS=Stenotrophomonas maltophil... [more]
MDH_STRM57.001e-5353.66Malate dehydrogenase OS=Stenotrophomonas maltophil... [more]
MDH_JANMA7.001e-5352.45Malate dehydrogenase OS=Janthinobacterium sp. (str... [more]
MDH_MYCUA9.143e-5352.24Malate dehydrogenase OS=Mycobacterium ulcerans (st... [more]
MDH_MYCMM9.143e-5352.24Malate dehydrogenase OS=Mycobacterium marinum (str... [more]

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Properties
Property NameValue
Genbank descriptionC32105C04EF RVDevelopN Citrus clementina cDNA clone C32105C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921463 ID=FC921463; Name=FC921463; organism=Citrus clementina; type=EST; length=709bp
GACTTCATCCACTATCACTCCATCGAAGTTCTCCTTCTCTCGCTTTACTG
GAAAAATCTTTTCGTTTCCTGTGATACATCTCTGATCCGAACTAATGGCC
AAGGAACCAGTTCGCGTTCTCGTCACCGGCGCCGCAGGGCAAATTGGATA
TGCACTTGTCCCCATGATTGCTAGGGGAGTGATGTTGGGTACTGACCAGC
CTGTGATTCTGCACATGCTTGATATCCCACCCGCAGCAGAGGCATTGAAT
GGTGTGAAGATGGAGTTGGTTGATGCTGCATTCCCTCTTCTTAAAGGTGT
TGTTGCTACAACTGATGCTGTTGAGGCATGCACTGGGGTCAATATTGCCG
TTATGGTTGGTGGCTTTCCAAGAAAAGAAGGAATGGAGAGAAAAGATGTG
ATGTCAAAGAACGTTTCAATCTACAAGGCTCAGGCTTCTGCCCTGGAGCA
GCACGCAGCTCCGAACTGCGAGGTTCTAGTTGTCGCTAACCCTGCAAACA
CCAATGCATTGATTCTGAAAGAATTTGCGCCATCAATCCCTGCTAAGAAC
ATTACATGCTTGACCAGATTGGATCATAACAGGGCATTGGGACAAATATC
TGAGAAACTGAATGTCCAAGTATCTGATGTTAAGAATGTGATTATTTGGG
GAAATCATTCATCATCTCAGTACCCTGATGTCAACCATGCAACTGTCAAT
ACTGCAGCT
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