FC921481

Overview
NameFC921481
Unique NameFC921481
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length742
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_RABIT (Triosephosphate isomerase OS=Oryctolagus cuniculus GN=TPI1 PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.277e-48
Identity = 96/170 (56.47%), Postives = 115/170 (67.65%), Query Frame = 1
Query:  232 ASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPXWDNVVIAYEPVWAI 741
            A S KFFVGGNWK NG K+++ +L++ LN AK+             YID  +  L  +I +AAQN +    GAFTGEIS   +KD G  WVVLGHSERRHV GE D+ IG+K A+ALSEGLGVIACIGE+L EREAG T  V F+Q K  AD +  W  VV+AYEPVWAI
Sbjct:    1 APSRKFFVGGNWKMNGRKKNLGELITTLNAAKVPADTEVVCAPPTAYIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALSEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAI 170          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPISB_DANRE (Triosephosphate isomerase B OS=Danio rerio GN=tpi1b PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.277e-48
Identity = 95/169 (56.21%), Postives = 113/169 (66.86%), Query Frame = 1
Query:  235 SSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPXWDNVVIAYEPVWAI 741
            S  KFFVGGNWK NG K+SI +L + LN AKL            +Y+D  ++ L   I++AAQN +    GAFTGEIS   +KD G KWV+LGHSERRHV GE D+ IG+K A+AL  GLGVIACIGE+L EREAG T  V F Q K  AD +  W  VV+AYEPVWAI
Sbjct:    2 SGRKFFVGGNWKMNGDKKSIEELANTLNSAKLNPDTEVVCGAPTIYLDYARSKLDPNIDVAAQNCYKVAKGAFTGEISPAMIKDCGVKWVILGHSERRHVFGESDELIGQKVAHALENGLGVIACIGEKLDEREAGITEKVVFAQTKFIADNVKDWSKVVLAYEPVWAI 170          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPISA_DANRE (Triosephosphate isomerase A OS=Danio rerio GN=tpi1a PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.277e-48
Identity = 94/169 (55.62%), Postives = 113/169 (66.86%), Query Frame = 1
Query:  235 SSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPXWDNVVIAYEPVWAI 741
            SS KFFVGGNWK NG KES+ +L+  LN A L            +Y+D  ++ L  RI +AAQN +    GAFTGEIS   +KD G  WV+LGHSERRHV GE D+ IG+K A+ L   LGVIACIGE+L+EREAG T DV F+Q K  AD +  W  VV+AYEPVWAI
Sbjct:    2 SSRKFFVGGNWKMNGDKESLGELIMTLNTASLNDETDVVCGAPSIYLDYARSKLDQRIGVAAQNCYKVPKGAFTGEISPAMIKDCGIDWVILGHSERRHVFGESDELIGQKVAHCLESDLGVIACIGEKLEEREAGTTEDVVFEQTKVIADNVKDWTRVVLAYEPVWAI 170          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_ORYSJ (Triosephosphate isomerase, cytosolic OS=Oryza sativa subsp. japonica GN=TPI PE=1 SV=3)

HSP 1 Score: 191.045 bits (484), Expect = 5.590e-48
Identity = 89/168 (52.98%), Postives = 118/168 (70.24%), Query Frame = 1
Query:  244 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXX--FVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPXWDNVVIAYEPVWAI 741
            KFFVGGNWKCNGT + + K+V  LN+ ++             +V++  VK+ L   I++AAQN WV KGGAFTGE+S E L ++   WV+LGHSERR ++GE ++F+G K AYALS+GL VIAC+GE L++RE+G T DV   Q KA ++ I  W NVV+AYEPVWAI
Sbjct:    4 KFFVGGNWKCNGTTDQVDKIVKILNEGQIASTDVVEVVVSPPYVFLPVVKSQLRPEIQVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRSLLGESNEFVGDKVAYALSQGLKVIACVGETLEQRESGSTMDVVAAQTKAISERIKDWTNVVVAYEPVWAI 171          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_SECCE (Triosephosphate isomerase, cytosolic OS=Secale cereale PE=2 SV=3)

HSP 1 Score: 190.274 bits (482), Expect = 9.536e-48
Identity = 89/168 (52.98%), Postives = 117/168 (69.64%), Query Frame = 1
Query:  244 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXX--FVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPXWDNVVIAYEPVWAI 741
            KFFVGGNWKCNGT   +  +V+ LN  ++             +V++  VK+ L   I++AAQN WV KGGAFTGE+S E L ++G  WV+LGHSERR ++ E  +F+G+K AYAL++GL VIAC+GE L++REAG T +V  +Q KA AD I  W NVV+AYEPVWAI
Sbjct:    4 KFFVGGNWKCNGTVSQVETIVNTLNAGQIASPDVVEVVVSPPYVFLPTVKDKLRPEIQVAAQNCWVKKGGAFTGEVSAEMLVNLGIPWVILGHSERRSLLAESSEFVGEKVAYALAQGLKVIACVGETLEQREAGSTMEVVAEQTKAIADKIKDWTNVVVAYEPVWAI 171          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_XENTR (Triosephosphate isomerase OS=Xenopus tropicalis GN=tpi1 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.733e-47
Identity = 90/169 (53.25%), Postives = 114/169 (67.46%), Query Frame = 1
Query:  235 SSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPXWDNVVIAYEPVWAI 741
            SS KFFVGGNWK NG K+S+T+L++ LN  K+            +Y+D  +  L  +  ++AQN +    GAFTGEIS   +KD G  WV+LGHSERRHV GE D+ IG+K A+ALSE +GVI CIGE+L +REAG T  V F+Q KA AD +  W  VV+AYEPVWAI
Sbjct:    2 SSRKFFVGGNWKMNGDKKSLTELINTLNSGKISADTEVVCGAPTIYLDFARQKLDAKFAVSAQNCYKVAKGAFTGEISPAMIKDCGATWVILGHSERRHVFGESDELIGQKVAHALSENVGVIGCIGEKLDQREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAI 170          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_MOUSE (Triosephosphate isomerase OS=Mus musculus GN=Tpi1 PE=1 SV=3)

HSP 1 Score: 187.963 bits (476), Expect = 4.733e-47
Identity = 93/171 (54.39%), Postives = 114/171 (66.67%), Query Frame = 1
Query:  229 MASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPXWDNVVIAYEPVWAI 741
            MA + KFFVGGNWK NG K+ + +L+  LN A +             YID  +  L  +I +AAQN +    GAFTGEIS   +KD+G  WVVLGHSERRHV GE D+ IG+K ++AL+EGLGVIACIGE+L EREAG T  V F+Q K  AD +  W  VV+AYEPVWAI
Sbjct:    1 MAPTRKFFVGGNWKMNGRKKCLGELICTLNAANVPAGTEVVCAPPTAYIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDLGATWVVLGHSERRHVFGESDELIGQKVSHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAI 171          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_XENLA (Triosephosphate isomerase OS=Xenopus laevis GN=tpi1 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.181e-47
Identity = 91/169 (53.85%), Postives = 115/169 (68.05%), Query Frame = 1
Query:  235 SSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPXWDNVVIAYEPVWAI 741
            S  KFFVGGNWK NG K+S+ +L++ LN  K+            +Y+D  +  L  +I ++AQN +    GAFTGEIS   +KD G  WV+LGHSERRHV GE D+ IG+K A+ALSEG+GVIACIGE+L +REAG T  V F+Q KA AD +  W  VV+AYEPVWAI
Sbjct:    2 SPRKFFVGGNWKMNGDKKSLGELINTLNSGKMNADTEVVCGAPAIYLDFARQKLDAKIALSAQNCYKVAKGAFTGEISPAMIKDCGATWVILGHSERRHVFGECDELIGQKVAHALSEGIGVIACIGEKLDQREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAI 170          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_HORVU (Triosephosphate isomerase, cytosolic OS=Hordeum vulgare PE=1 SV=3)

HSP 1 Score: 187.578 bits (475), Expect = 6.181e-47
Identity = 89/168 (52.98%), Postives = 115/168 (68.45%), Query Frame = 1
Query:  244 KFFVGGNWKCNGTKESITKLVSDLNDAKL--EXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPXWDNVVIAYEPVWAI 741
            KFFVGGNWKCNGT E +  +V  LN  ++             +V++  VK  L   I++AAQN WV KGGAFTGE+S E L ++G  WV+LGHSERR ++GE  +F+G+K AYAL++GL VIAC+GE L++REAG T +V  +Q KA A  I  W N V+AYEPVWAI
Sbjct:    4 KFFVGGNWKCNGTVEQVEAIVQTLNAGQIVSPDVVEVVVSPPYVFLPIVKAKLRPEIQVAAQNCWVKKGGAFTGEVSAEMLANLGVPWVILGHSERRSLLGESSEFVGEKVAYALAQGLKVIACVGETLEQREAGSTMEVVAEQTKAIAGKIKDWSNGVVAYEPVWAI 171          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_ORYLA (Triosephosphate isomerase OS=Oryzias latipes GN=tpi1 PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.377e-46
Identity = 90/169 (53.25%), Postives = 114/169 (67.46%), Query Frame = 1
Query:  235 SSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPXWDNVVIAYEPVWAI 741
            +  +FFVGGNWK NG KES+ +L+S LN A L            +Y+D  ++ L  RI +AAQN +    GAFTGEIS   +KD G  WV+LGHSERRHV GE+D+ IG+K A+AL   L VIACIGE+L+EREAG T DV F Q +  A+ +  W+ VV+AYEPVWAI
Sbjct:    2 AQRRFFVGGNWKMNGNKESLEELMSTLNTASLHEDTEVVCAAPSIYLDFARSGLDSRISVAAQNCYKVAKGAFTGEISPAMIKDCGADWVILGHSERRHVFGENDELIGQKVAHALESDLSVIACIGEKLEEREAGTTEDVIFAQTQVIAENVMDWEKVVLAYEPVWAI 170          
The following BLAST results are available for this feature:
BLAST of FC921481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_RABIT3.277e-4856.47Triosephosphate isomerase OS=Oryctolagus cuniculus... [more]
TPISB_DANRE3.277e-4856.21Triosephosphate isomerase B OS=Danio rerio GN=tpi1... [more]
TPISA_DANRE3.277e-4855.62Triosephosphate isomerase A OS=Danio rerio GN=tpi1... [more]
TPIS_ORYSJ5.590e-4852.98Triosephosphate isomerase, cytosolic OS=Oryza sati... [more]
TPIS_SECCE9.536e-4852.98Triosephosphate isomerase, cytosolic OS=Secale cer... [more]
TPIS_XENTR4.733e-4753.25Triosephosphate isomerase OS=Xenopus tropicalis GN... [more]
TPIS_MOUSE4.733e-4754.39Triosephosphate isomerase OS=Mus musculus GN=Tpi1 ... [more]
TPIS_XENLA6.181e-4753.85Triosephosphate isomerase OS=Xenopus laevis GN=tpi... [more]
TPIS_HORVU6.181e-4752.98Triosephosphate isomerase, cytosolic OS=Hordeum vu... [more]
TPIS_ORYLA1.377e-4653.25Triosephosphate isomerase OS=Oryzias latipes GN=tp... [more]

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Properties
Property NameValue
Genbank descriptionC32105D12EF RVDevelopN Citrus clementina cDNA clone C32105D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921481 ID=FC921481; Name=FC921481; organism=Citrus clementina; type=EST; length=742bp
GACATACACAAAGGCTGAGCAAGAGCAAGAGCAAGAGCCAAAGCAGCTGA
GATTATAATTTGACTTTCACTTTGACTTTTCACAATGGCGTCAATGGTCT
CCACAAACTGCGCTCAATTCTCCGGCCTGCGCCGCTCATCGCCCACACAG
TCTTTTTCACAGCACGTCAACTCTCACCTCCGCCTCTTCTCTTCTCGTAG
ACCTCGCCGCGGCAGCAGCGTTGTCGCCATGGCCAGCTCCAACAAGTTCT
TTGTTGGGGGAAACTGGAAGTGTAATGGAACAAAGGAATCTATCACCAAG
CTTGTTTCGGACCTGAACGATGCAAAGTTGGAGGCAGATGTTGATGTTGT
GGTAGCGCCTCCCTTTGTTTACATTGATCAAGTGAAGAATTCATTAACAG
ATAGAATTGAGATAGCAGCTCAGAACTCTTGGGTCGGAAAAGGTGGAGCA
TTTACAGGAGAAATCAGTGTGGAACAACTGAAAGATATTGGCTGCAAGTG
GGTTGTTCTGGGGCATTCTGAGCGCAGACATGTTATTGGTGAAGATGATC
AGTTTATAGGGAAGAAAGCTGCCTATGCCTTGAGCGAGGGACTTGGTGTA
ATAGCTTGTATCGGGGAACAGTTGCAAGAGAGAGAAGCAGGAAAAACTTT
TGATGTCTGTTTTCAGCAACTTAAAGCCTATGCAGATGCTATACCCAGNT
GGGATAATGTAGTCATTGCATATGAGCCTGTATGGGCTATTG
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