FC921481

Overview
NameFC921481
Unique NameFC921481
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length742
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_BORGA (Triosephosphate isomerase OS=Borrelia garinii GN=tpiA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.072e-18
Identity = 60/172 (34.88%), Postives = 85/172 (49.42%), Query Frame = 1
Query:  244 KFFVGGNWKCN--GTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLG-VIACIGEQLQEREAGKTFDVCFQQLKAYADAIPXWD--NVVIAYEPVWAI 741
            K F+ GNWK +   T+ SI           L+          F  + +V   +    I + AQN    + GA T EIS   L + G ++V+LGHSE R  +GE D+ I KK    L      +I C+GE L ER++ KT DV   Q+K   D +   D   +++AYEP+WAI
Sbjct:    3 KTFLAGNWKMHYTSTEASIVAKKIATEVKTLKDDFVIMITPPFTALSKVSECIKGSNILLGAQNMSYMESGARTSEISPSMLLEFGVEYVILGHSECRLYLGETDEIINKKILTGLKHPFKYLILCVGETLNERDSEKTLDVVLNQVKKGLDGVSESDIKRIILAYEPIWAI 174          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_ANAVT (Triosephosphate isomerase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=tpiA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.072e-18
Identity = 56/169 (33.14%), Postives = 85/169 (50.30%), Query Frame = 1
Query:  244 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLT---DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPXWDNVVIAYEPVWAI 741
            K  + GNWK   T+    + + +   A  E            + D    S +     +++ AQN    + GA+TGEIS   L +IG ++V++GHSERR   GE D+ +  +   A   GL  I C+GE  Q+R++G+T  +   QL      +    N+VIAYEP+WAI
Sbjct:    3 KIVIAGNWKMFKTQAESQEFLKEFLPALEETPQEREVLLCVPFTDLAILSQSLHGSLVQLGAQNVHWAENGAYTGEISGPMLTEIGVRYVIVGHSERRQFFGETDETVNLRLQAAQKYGLTPILCVGETKQQRDSGETESLIVSQLDKDLINVDQ-TNLVIAYEPIWAI 170          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_ANASP (Triosephosphate isomerase OS=Anabaena sp. (strain PCC 7120) GN=tpiA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.072e-18
Identity = 56/169 (33.14%), Postives = 85/169 (50.30%), Query Frame = 1
Query:  244 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLT---DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPXWDNVVIAYEPVWAI 741
            K  + GNWK   T+    + + +   A  E            + D    S +     +++ AQN    + GA+TGEIS   L +IG ++V++GHSERR   GE D+ +  +   A   GL  I C+GE  Q+R++G+T  +   QL      +    N+VIAYEP+WAI
Sbjct:    3 KIVIAGNWKMFKTQAESQEFLKEFLPALEETPQEREVLLCVPFTDLAILSQSLHGSLVQLGAQNVHWAENGAYTGEISGPMLTEIGVRYVIVGHSERRQFFGETDETVNLRLQAAQKYGLTPILCVGETKQQRDSGETESLIVSQLDKDLINVDQ-TNLVIAYEPIWAI 170          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS1_RHIME (Triosephosphate isomerase 1 OS=Rhizobium meliloti GN=tpiA1 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.072e-18
Identity = 61/169 (36.09%), Postives = 83/169 (49.11%), Query Frame = 1
Query:  253 VGGNWKCNGTKESITKLVSDLN----DAKLEXXXXXXXXXXFVYIDQVKNSLTDR--IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPXWDNVVIAYEPVWAI 741
            V GNWK NGT+ S+ ++ +       D               +Y   V  +L D   + I AQ+    + GA TGE+S E + D     V++GHSERR   GE D  +  K   A    L  I C+GE  +ER+AG+T D+  +QL          +N VIAYEPVWAI
Sbjct:    9 VAGNWKMNGTRASLDQIKAMAEGVKGDLSARVDALICPPATLLY---VATALCDDSPLMIGAQDCHQKQSGAHTGEVSAEMVADCFGTHVIVGHSERRTDHGEGDALVRAKTEAAHGADLVAIVCVGETEEERKAGRTLDILKRQLSESLPDQATAENTVIAYEPVWAI 174          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS1_BRUSU (Triosephosphate isomerase 1 OS=Brucella suis GN=tpiA1 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.072e-18
Identity = 59/166 (35.54%), Postives = 83/166 (50.00%), Query Frame = 1
Query:  253 VGGNWKCNGTKESITKL--VSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPXWDNVVIAYEPVWAI 741
            V GNWK NG  ES+T+L  ++    + L              + +   +L  + + +  Q++     GA TG+IS E LK+ G   V+LGHSERR    E ++ I  K   A + GL  I C+GE   ER+A +  DV   QL          +N +IAYEPVWAI
Sbjct:    9 VAGNWKMNGKGESLTELRAIAAGLSSDLGRKLDAVICVPATLLSRAAETLEGETVGLGGQDAHFKTSGAHTGDISPEMLKEAGATHVILGHSERRTDHHESNKLICAKTEAAWAAGLVAIVCVGETASERKAERALDVIGDQLSGSLPDGVTAENTIIAYEPVWAI 174          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS1_BRUAB (Triosephosphate isomerase 1 OS=Brucella abortus GN=tpiA1 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.072e-18
Identity = 59/166 (35.54%), Postives = 83/166 (50.00%), Query Frame = 1
Query:  253 VGGNWKCNGTKESITKL--VSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPXWDNVVIAYEPVWAI 741
            V GNWK NG  ES+T+L  ++    + L              + +   +L  + + +  Q++     GA TG+IS E LK+ G   V+LGHSERR    E ++ I  K   A + GL  I C+GE   ER+A +  DV   QL          +N +IAYEPVWAI
Sbjct:    9 VAGNWKMNGKGESLTELRAIAAGLSSDLGRKLDAVICVPATLLSRAAETLEGETVGLGGQDAHFKTSGAHTGDISPEMLKEAGATHVILGHSERRTDHHESNKLICAKTEAAWAAGLVAIVCVGETASERKAERALDVIGDQLSGSLPDGVTAENTIIAYEPVWAI 174          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_ONYPE (Triosephosphate isomerase OS=Onion yellows phytoplasma GN=tpiA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.706e-18
Identity = 55/166 (33.13%), Postives = 79/166 (47.59%), Query Frame = 1
Query:  253 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIP--XWDNVVIAYEPVWAI 741
            + GNWK    K+   + +  ++     +             +D +       +++ AQN +    GAFTGE+S + L  +G K V+LGHSERR   GE DQ +  K   AL   L    C+GE L  +E  +T     QQL      +P     N++IAYEPVWAI
Sbjct:   10 IAGNWKMYKCKDEALEFIQKVSLQVPDQTQVQTLIFPQLTLLDSLAQLQGTNLQVGAQNMFYESEGAFTGEVSPQNLLSLGVKHVLLGHSERRTFFGETDQTVNLKLLSALKHKLVPTVCVGESLLTKENNQTQVFLDQQLTNIFAGVPEEALQNIIIAYEPVWAI 175          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS1_BRUME (Triosephosphate isomerase 1 OS=Brucella melitensis GN=tpiA1 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.706e-18
Identity = 58/166 (34.94%), Postives = 83/166 (50.00%), Query Frame = 1
Query:  253 VGGNWKCNGTKESITKL--VSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPXWDNVVIAYEPVWAI 741
            V GNWK NG  ES+T+L  ++    + L              + +   +L  + + +  Q++     GA TG+IS E LK+ G   V+LGHSERR    E ++ I  K   A + GL  I C+GE   ER+A +  DV   QL          +N +IAYEP+WAI
Sbjct:    9 VAGNWKMNGKGESLTELRAIAAGLSSDLGRKLDAVICVPATLLSRAAETLEGETVGLGGQDAHFKTSGAHTGDISPEMLKEAGATHVILGHSERRTDHHESNKLICAKTEAAWAAGLVAIVCVGETASERKAERALDVIGDQLSGSLPDGVTAENTIIAYEPIWAI 174          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_XANC5 (Triosephosphate isomerase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=tpiA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.534e-18
Identity = 53/166 (31.93%), Postives = 86/166 (51.81%), Query Frame = 1
Query:  253 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYI-DQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAI--PXWDNVVIAYEPVWAI 741
            V GNWK +G++   T+LV+ +                  Y+ D +++     +   AQ+    + GA+TGE+S   L D+G  + ++GHSERR    E  + + +K A A+  GL  + C+GE L++REAG+T  +   QL      +    +   V+AYEP+WAI
Sbjct:    6 VAGNWKLHGSRAFATELVAKVAAHMPLEGVEVVILPPLPYLGDLIEDFEAHHLSFGAQDVSSNEKGAYTGEVSASMLVDVGAGYGLVGHSERRQYHHESSELVARKFAAAIHAGLIPVLCVGESLEQREAGQTEAILRAQLDPVLALVGSAGFAGAVLAYEPIWAI 171          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_STRSY (Triosephosphate isomerase OS=Streptococcus suis (strain 05ZYH33) GN=tpiA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.534e-18
Identity = 63/178 (35.39%), Postives = 86/178 (48.31%), Query Frame = 1
Query:  238 SNKFFVGGNWKCNGTKESITKLVSDLNDA-----KLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKA-----YADAIPXWDNVVIAYEPVWAI 741
            S K  + GNWK N   +     V  +        K+E             +   K+S    +++AAQN +    GAFTGE S + L ++G  +VV+GHSERR    E D+ I KKA      GL  I C GE L+  EAGK  +    Q+ A      AD +    ++VIAYEP+WAI
Sbjct:    2 SRKPIIAGNWKMNKNPQEAQAFVEAIAGKLPAGDKIEAAIAAPAVDLNALLWFAKDS---ELKVAAQNCYFEDAGAFTGETSPKVLAEMGVNYVVIGHSERRDYFHETDEDINKKAHAIFRNGLTPIICCGESLETYEAGKAVEFVGAQVSAALKDLTADQVA---SLVIAYEPIWAI 173          
The following BLAST results are available for this feature:
BLAST of FC921481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_BORGA2.072e-1834.88Triosephosphate isomerase OS=Borrelia garinii GN=t... [more]
TPIS_ANAVT2.072e-1833.14Triosephosphate isomerase OS=Anabaena variabilis (... [more]
TPIS_ANASP2.072e-1833.14Triosephosphate isomerase OS=Anabaena sp. (strain ... [more]
TPIS1_RHIME2.072e-1836.09Triosephosphate isomerase 1 OS=Rhizobium meliloti ... [more]
TPIS1_BRUSU2.072e-1835.54Triosephosphate isomerase 1 OS=Brucella suis GN=tp... [more]
TPIS1_BRUAB2.072e-1835.54Triosephosphate isomerase 1 OS=Brucella abortus GN... [more]
TPIS_ONYPE2.706e-1833.13Triosephosphate isomerase OS=Onion yellows phytopl... [more]
TPIS1_BRUME2.706e-1834.94Triosephosphate isomerase 1 OS=Brucella melitensis... [more]
TPIS_XANC53.534e-1831.93Triosephosphate isomerase OS=Xanthomonas campestri... [more]
TPIS_STRSY3.534e-1835.39Triosephosphate isomerase OS=Streptococcus suis (s... [more]

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Properties
Property NameValue
Genbank descriptionC32105D12EF RVDevelopN Citrus clementina cDNA clone C32105D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921481 ID=FC921481; Name=FC921481; organism=Citrus clementina; type=EST; length=742bp
GACATACACAAAGGCTGAGCAAGAGCAAGAGCAAGAGCCAAAGCAGCTGA
GATTATAATTTGACTTTCACTTTGACTTTTCACAATGGCGTCAATGGTCT
CCACAAACTGCGCTCAATTCTCCGGCCTGCGCCGCTCATCGCCCACACAG
TCTTTTTCACAGCACGTCAACTCTCACCTCCGCCTCTTCTCTTCTCGTAG
ACCTCGCCGCGGCAGCAGCGTTGTCGCCATGGCCAGCTCCAACAAGTTCT
TTGTTGGGGGAAACTGGAAGTGTAATGGAACAAAGGAATCTATCACCAAG
CTTGTTTCGGACCTGAACGATGCAAAGTTGGAGGCAGATGTTGATGTTGT
GGTAGCGCCTCCCTTTGTTTACATTGATCAAGTGAAGAATTCATTAACAG
ATAGAATTGAGATAGCAGCTCAGAACTCTTGGGTCGGAAAAGGTGGAGCA
TTTACAGGAGAAATCAGTGTGGAACAACTGAAAGATATTGGCTGCAAGTG
GGTTGTTCTGGGGCATTCTGAGCGCAGACATGTTATTGGTGAAGATGATC
AGTTTATAGGGAAGAAAGCTGCCTATGCCTTGAGCGAGGGACTTGGTGTA
ATAGCTTGTATCGGGGAACAGTTGCAAGAGAGAGAAGCAGGAAAAACTTT
TGATGTCTGTTTTCAGCAACTTAAAGCCTATGCAGATGCTATACCCAGNT
GGGATAATGTAGTCATTGCATATGAGCCTGTATGGGCTATTG
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