FC921481

Overview
NameFC921481
Unique NameFC921481
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length742
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_EMENI (Triosephosphate isomerase OS=Emericella nidulans GN=tpiA PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.603e-37
Identity = 82/168 (48.81%), Postives = 104/168 (61.90%), Query Frame = 1
Query:  244 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAI--PXWDNVVIAYEPVWAI 741
            KFFVGGN+K NG  ES T ++ +LN A L+           +Y+ Q +      I +AAQN +    GAFTGEISV+QL++    W +LGHSERR ++ E D+FI +K   A+  GL VI CIGE L+EREA KT DV  +QL A A  +    W  VVIAYEPVWAI
Sbjct:    4 KFFVGGNFKMNGNAESTTSIIKNLNSANLDKSVEVVVSPPALYLLQAREVANKEIGVAAQNVFDKPNGAFTGEISVQQLREANIDWTILGHSERRVILKETDEFIARKTKAAIEGGLQVIFCIGETLEEREANKTIDVVTRQLNAAAKELSKEQWAKVVIAYEPVWAI 171          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_CANAL (Triosephosphate isomerase OS=Candida albicans GN=TPI1 PE=1 SV=3)

HSP 1 Score: 155.221 bits (391), Expect = 3.399e-37
Identity = 76/169 (44.97%), Postives = 104/169 (61.54%), Query Frame = 1
Query:  238 SNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYID-QVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPXWDNVVIAYEPVWAI 741
            + +FFVGGN+K NGTK+ IT ++ +LN A L            +Y+   V+ +    + I AQN +    GAFTGE    Q+ D+G  W + GHSERR +I E D+FI +K  +AL  G+ VI CIGE L+ER+ G T DVC +QL A +  +  W N+V+AYEPVWAI
Sbjct:    2 ARQFFVGGNFKANGTKQQITSIIDNLNKADLPKDVEVVICPPALYLGLAVEQNKQPTVAIGAQNVFDKSCGAFTGETCASQILDVGASWTLTGHSERRTIIKESDEFIAEKTKFALDTGVKVILCIGETLEERKGGVTLDVCARQLDAVSKIVSDWSNIVVAYEPVWAI 170          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_LACSA (Triosephosphate isomerase, cytosolic (Fragment) OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.440e-37
Identity = 71/112 (63.39%), Postives = 88/112 (78.57%), Query Frame = 1
Query:  406 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPXWDNVVIAYEPVWAI 741
            I++AAQN WV KGGAFTGE+S E L ++G  WV+LGHSERR ++ E ++F+G K AYALS+GL VIAC+GE L++REAG T +V   Q KA AD I  WDNVV+AYEPVWAI
Sbjct:    1 IQVAAQNCWVKKGGAFTGEVSAEMLANLGVPWVILGHSERRALLNETNEFVGDKVAYALSQGLKVIACVGETLEQREAGTTMEVVAAQTKAIADKISSWDNVVLAYEPVWAI 112          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_HELVI (Triosephosphate isomerase (Fragment) OS=Heliothis virescens GN=Tpi PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.292e-36
Identity = 79/157 (50.32%), Postives = 99/157 (63.06%), Query Frame = 1
Query:  274 NGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAI-PXWDNVVIAYEPVWAI 741
            NG K+ +T +V  L    L+           +Y+  V++ +   I +AAQN W    GAFTGEIS   +KDIG  WV+LGHSERR + GE D  + +K A+AL  GL VIACIGE L+EREAGKT +V F+Q KA   AI   W NVV+AYEPVWAI
Sbjct:    2 NGDKKQVTDIVETLKKGPLDPNVEVVIGVPAIYLAYVQSIVPGTISVAAQNCWKVAKGAFTGEISPAMIKDIGANWVILGHSERRTIFGEKDDLVAEKVAHALENGLKVIACIGETLEEREAGKTEEVVFRQTKALLPAIGNNWANVVLAYEPVWAI 158          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_ANOME (Triosephosphate isomerase (Fragment) OS=Anopheles merus GN=Tpi PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.292e-36
Identity = 80/151 (52.98%), Postives = 98/151 (64.90%), Query Frame = 1
Query:  289 SITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPXWDNVVIAYEPVWAI 741
            SIT+L   L+   L+            Y+   ++ L + I +AAQN +    GAFTGEIS   LKD+G  WV+LGHSERR + GE D+ I +K A+AL EGL VIACIGE LQEREAG+T  VCF+Q KA A  +  W NVVIAYEPVWAI
Sbjct:    1 SITELCKTLSAGPLDPNTEVVVGCPAPYLSLARSLLPETIGVAAQNCYKVAKGAFTGEISPAMLKDLGLGWVILGHSERRAIFGETDELIAEKVAHALGEGLKVIACIGETLQEREAGQTEAVCFRQTKAIAAQVKDWSNVVIAYEPVWAI 151          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_KLULA (Triosephosphate isomerase OS=Kluyveromyces lactis GN=TPI1 PE=3 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 2.878e-36
Identity = 74/166 (44.58%), Postives = 106/166 (63.86%), Query Frame = 1
Query:  247 FFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQ-VKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPXWDNVVIAYEPVWAI 741
            FF+GGN+K NG+K SI ++V  LN A +            +Y+D  V  +    ++I+AQN++    GA+TGE SVEQ+KD+G +WV+LGHSERR    E D+ + +K  +AL  G+ VI CIGE L+E++   T  V  +QL+A  + +  W NVV+AYEPVWAI
Sbjct:    5 FFIGGNFKMNGSKASIKEIVDRLNGASIPSNVEVVIAPPAIYLDHAVALNKRKEVKISAQNAYSKASGAYTGENSVEQIKDVGAEWVILGHSERRTYFNETDEIVAEKTKFALDSGVKVILCIGETLEEKQQNITLQVVQRQLQAVLEKVQDWTNVVVAYEPVWAI 170          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_AEDTO (Triosephosphate isomerase (Fragment) OS=Aedes togoi GN=Tpi PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.759e-36
Identity = 78/151 (51.66%), Postives = 95/151 (62.91%), Query Frame = 1
Query:  289 SITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPXWDNVVIAYEPVWAI 741
            SI +L   L    L             Y+   ++ L D + +AAQN +    GAFTGEIS   LKD+   WV+LGHSERR + GE D+ I  K A+AL+EGL VIACIGE LQEREAG+T  VCF+Q KA AD +  W NVV+AYEPVWAI
Sbjct:    1 SIAELCKVLTTGPLNADTEVVVGCPAPYLTLARSQLPDSVGVAAQNCYKVAKGAFTGEISPAMLKDLNIGWVILGHSERRAIFGESDELIADKVAHALAEGLKVIACIGETLQEREAGQTEAVCFRQTKAIADKVKDWSNVVVAYEPVWAI 151          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_ASPOR (Triosephosphate isomerase OS=Aspergillus oryzae GN=tpiA PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.094e-35
Identity = 78/170 (45.88%), Postives = 108/170 (63.53%), Query Frame = 1
Query:  244 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDR--IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAI--PXWDNVVIAYEPVWAI 741
            +FFVGGN+K NGT ESIT ++ +LN+AKL+           +Y+   +    ++  + +++QN +    GAFTGEISV QL+D    W ++GHSERR ++ E D+FI +K   A+  G+ VI CIGE L+EREA KT +V  +QL A A  +    W  VVIAYEPVWAI
Sbjct:    4 QFFVGGNFKMNGTAESITAIIKNLNEAKLDETTEVVVSPPALYLTLAQQVADEKKKVAVSSQNVFDKPNGAFTGEISVSQLQDAKIPWTIIGHSERRVILKETDEFIARKVKAAIDGGISVIFCIGETLEEREADKTIEVVTKQLNAAAKELTKEQWSKVVIAYEPVWAI 173          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_CULPI (Triosephosphate isomerase (Fragment) OS=Culex pipiens GN=Tpi PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.436e-35
Identity = 78/151 (51.66%), Postives = 93/151 (61.59%), Query Frame = 1
Query:  289 SITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPXWDNVVIAYEPVWAI 741
            SIT+L   L    L             Y+   ++ L D + +AAQN +    GAFTGEIS   LKD+   WV+LGHSERR + GE  + I  K  +AL+EGL VIACIGE LQEREA KT  VCF+Q KA AD +  W NVVIAYEPVWAI
Sbjct:    1 SITELCKVLTTGPLNADTEVVVGCPAPYLSLARSQLPDTVGVAAQNCYKVAKGAFTGEISPAMLKDLNIGWVILGHSERRAIFGESGELIADKIVHALAEGLKVIACIGETLQEREAAKTEAVCFRQTKAIADKVKDWSNVVIAYEPVWAI 151          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_SCHPO (Triosephosphate isomerase OS=Schizosaccharomyces pombe GN=tpi1 PE=1 SV=4)

HSP 1 Score: 144.436 bits (363), Expect = 6.001e-34
Identity = 74/169 (43.79%), Postives = 101/169 (59.76%), Query Frame = 1
Query:  238 SNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXF-VYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPXWDNVVIAYEPVWAI 741
            + KFFVGGN+K NG+ ES+  ++  LN  KL             +Y+   +  +   I + AQN +  K GA+TGE S + L D G  + + GHSERR +  E D+F+  K  +AL +GL V+ACIGE L EREA +T +V  +QL A AD +  W  +VIAYEPVWAI
Sbjct:    2 ARKFFVGGNFKMNGSLESMKTIIEGLNTTKLNVGDVETVIFPQNMYLITTRQQVKKDIGVGAQNVFDKKNGAYTGENSAQSLIDAGITYTLTGHSERRTIFKESDEFVADKTKFALEQGLTVVACIGETLAEREANETINVVVRQLNAIADKVQNWSKIVIAYEPVWAI 170          
The following BLAST results are available for this feature:
BLAST of FC921481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_EMENI2.603e-3748.81Triosephosphate isomerase OS=Emericella nidulans G... [more]
TPIS_CANAL3.399e-3744.97Triosephosphate isomerase OS=Candida albicans GN=T... [more]
TPIS_LACSA4.440e-3763.39Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIS_HELVI1.292e-3650.32Triosephosphate isomerase (Fragment) OS=Heliothis ... [more]
TPIS_ANOME1.292e-3652.98Triosephosphate isomerase (Fragment) OS=Anopheles ... [more]
TPIS_KLULA2.878e-3644.58Triosephosphate isomerase OS=Kluyveromyces lactis ... [more]
TPIS_AEDTO3.759e-3651.66Triosephosphate isomerase (Fragment) OS=Aedes togo... [more]
TPIS_ASPOR1.094e-3545.88Triosephosphate isomerase OS=Aspergillus oryzae GN... [more]
TPIS_CULPI2.436e-3551.66Triosephosphate isomerase (Fragment) OS=Culex pipi... [more]
TPIS_SCHPO6.001e-3443.79Triosephosphate isomerase OS=Schizosaccharomyces p... [more]

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Properties
Property NameValue
Genbank descriptionC32105D12EF RVDevelopN Citrus clementina cDNA clone C32105D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921481 ID=FC921481; Name=FC921481; organism=Citrus clementina; type=EST; length=742bp
GACATACACAAAGGCTGAGCAAGAGCAAGAGCAAGAGCCAAAGCAGCTGA
GATTATAATTTGACTTTCACTTTGACTTTTCACAATGGCGTCAATGGTCT
CCACAAACTGCGCTCAATTCTCCGGCCTGCGCCGCTCATCGCCCACACAG
TCTTTTTCACAGCACGTCAACTCTCACCTCCGCCTCTTCTCTTCTCGTAG
ACCTCGCCGCGGCAGCAGCGTTGTCGCCATGGCCAGCTCCAACAAGTTCT
TTGTTGGGGGAAACTGGAAGTGTAATGGAACAAAGGAATCTATCACCAAG
CTTGTTTCGGACCTGAACGATGCAAAGTTGGAGGCAGATGTTGATGTTGT
GGTAGCGCCTCCCTTTGTTTACATTGATCAAGTGAAGAATTCATTAACAG
ATAGAATTGAGATAGCAGCTCAGAACTCTTGGGTCGGAAAAGGTGGAGCA
TTTACAGGAGAAATCAGTGTGGAACAACTGAAAGATATTGGCTGCAAGTG
GGTTGTTCTGGGGCATTCTGAGCGCAGACATGTTATTGGTGAAGATGATC
AGTTTATAGGGAAGAAAGCTGCCTATGCCTTGAGCGAGGGACTTGGTGTA
ATAGCTTGTATCGGGGAACAGTTGCAAGAGAGAGAAGCAGGAAAAACTTT
TGATGTCTGTTTTCAGCAACTTAAAGCCTATGCAGATGCTATACCCAGNT
GGGATAATGTAGTCATTGCATATGAGCCTGTATGGGCTATTG
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