FC921481

Overview
NameFC921481
Unique NameFC921481
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length742
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_PSEE4 (Triosephosphate isomerase OS=Pseudomonas entomophila (strain L48) GN=tpiA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.059e-30
Identity = 74/167 (44.31%), Postives = 102/167 (61.08%), Query Frame = 1
Query:  253 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDR-IEIAAQNSWVG-KGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADA--IPXWDNVVIAYEPVWAI 741
            V GNWK +GT+ S+ +L   L +  L            +++ QV + L  + I + AQNS V  + GA TGE++  QL ++GCK+V++GHSERR +IGE D+ + +K A A   GL  + CIGE L EREAG+T  V  +QL +  DA  I  + N VIAYEPVWAI
Sbjct:    6 VAGNWKMHGTRASVVELTQGLGNMSLPSGVEVAVFPPSLFVTQVIDGLEGKGINVGAQNSAVQPEQGALTGEVAPSQLAEVGCKYVLVGHSERRQIIGESDEVLNQKFAAAQKSGLTPVLCIGETLAEREAGETLKVVGRQLSSVIDAFGIKAFANAVIAYEPVWAI 172          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_ALKOO (Triosephosphate isomerase OS=Alkaliphilus oremlandii (strain OhILAs) GN=tpiA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.807e-30
Identity = 71/169 (42.01%), Postives = 97/169 (57.40%), Query Frame = 1
Query:  244 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTD-RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIP--XWDNVVIAYEPVWAI 741
            K  + GNWK N   +    LV+ + D   +          F  + QV+ +L    +++ AQN    + GA+TGEIS   LKDIG ++V+LGHSERR    E D+ + KK   A+ E L  I CIGE L+EREA +TFDV  +QL    + +P    DNVV+AYEP+WAI
Sbjct:    3 KPIIAGNWKMNKVSKEALDLVNQIKDEVHKTEVEVVVCCPFTVLSQVQKALVGTNLKLGAQNMHWEEDGAYTGEISANMLKDIGVEYVILGHSERRQYFNETDETVNKKVKKAIKENLKPIVCIGESLEEREANQTFDVIKKQLLGAFEGVPAEAMDNVVLAYEPIWAI 171          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_DICDI (Triosephosphate isomerase OS=Dictyostelium discoideum GN=tpiA PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.025e-30
Identity = 70/174 (40.23%), Postives = 103/174 (59.20%), Query Frame = 1
Query:  229 MASSNKFFVGGNWKCNGTKESITKLVSDLNDA-KLEXXXXXXXXXXFVYIDQVKNSLTDR-IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIP-XWDNVVIAYEPVWAI 741
            M  +  FFVGGN K NG+K  +  L   +N++ + +          + Y++ + N L ++  ++ +QN +    GAFTGEIS   L D+G  +V++GHSERR+V  E  + I KK  YA+S GL VI C+GE L +R++  T  +  +QLK +A   P  W  +VIAYEPVWAI
Sbjct:    1 MTGTRTFFVGGNHKMNGSKSMLESLSKGMNESVENKENVDIFIAPSYPYLEFLSNKLDNKKFKVCSQNCYSVAKGAFTGEISANMLVDLGIPYVIIGHSERRNVFSESSELITKKTKYAISLGLTVILCLGELLADRKSNNTEHILSEQLKDFASFTPEEWSKIVIAYEPVWAI 174          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_LAWIP (Triosephosphate isomerase OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=tpiA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.866e-30
Identity = 79/173 (45.66%), Postives = 96/173 (55.49%), Query Frame = 1
Query:  244 KFFVGGNWKCNGT----KESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDR-IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIP--XWDNVVIAYEPVWAI 741
            K  +  NWK N      K+ I KL+S      +           F+ ID +K  L +  I I AQN +    GAFTGEIS+E LKD+GC WV++GHSERRH+IGE    I +K   ALS G  +I CIGE  QEREAG    V  QQL+     IP      +VIAYEPVWAI
Sbjct:    2 KILIAANWKMNKNRLEAKDMIEKLMS--MPEGIPPQRDIVLFPPFLAIDTIKEKLKNSTIVIGAQNFYPAPSGAFTGEISLEMLKDVGCSWVLIGHSERRHIIGELPTLIEQKTKLALSYGFSIILCIGETAQEREAGLVNSVLEQQLRTSLTDIPSKAISQLVIAYEPVWAI 172          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPI2_GIALA (Triosephosphate isomerase OS=Giardia lamblia PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.866e-30
Identity = 72/169 (42.60%), Postives = 102/169 (60.36%), Query Frame = 1
Query:  250 FVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDR-IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAI----PXWDNVVIAYEPVWAI 741
            F+GGN+KCNG+ + I   V+ +   K+           FV++     + T + ++IAAQN ++   GA+TGE SVE L D+G   V++GHSERR ++GE ++   KKA  AL +G+ VI C GE L ER+A  T +V   QL+A    I      W+NVVIAYEPVW+I
Sbjct:    7 FIGGNFKCNGSLDFIKSHVASIASYKIPESVDVVVAPSFVHLSTAIAANTSKCLKIAAQNVYLEGNGAWTGETSVEMLLDMGLSHVIIGHSERRRIMGETNEQSAKKAKRALDKGMTVIFCTGETLDERKANNTMEVNIAQLEALKKEIGESKKLWENVVIAYEPVWSI 175          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPISL_HUMAN (Putative triosephosphate isomerase-like protein LOC286016 OS=Homo sapiens PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 8.967e-30
Identity = 72/170 (42.35%), Postives = 92/170 (54.12%), Query Frame = 1
Query:  229 MASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPXWDNVVIAYEPVWA 738
            MA S KFFVG NWK NG K+ + +L+   N A +             Y +  +  L  +I +A QN +    GAFTGEIS   +KD+G  WVV                   K A+AL+E LGVIACIGE+L EREAG T  V F+Q K  AD +  W  V++AY+PVWA
Sbjct:    1 MAPSRKFFVGRNWKMNGRKKCLGELIGTQNAATVPADTKVICALATAYNELARQKLAPKIAVAPQNCYKVTNGAFTGEISPGMVKDLGVTWVV-------------------KVAHALAERLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVILAYDPVWA 151          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_THICR (Triosephosphate isomerase OS=Thiomicrospira crunogena (strain XCL-2) GN=tpiA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.998e-29
Identity = 78/171 (45.61%), Postives = 97/171 (56.73%), Query Frame = 1
Query:  244 KFFVGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSL-TDRIEIAAQNSWVGK-GGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYAD--AIPXWDNVVIAYEPVWAI 741
            + FV GNWK +G K SI  LV+ LN  A              +Y+D  KN L    I +  QN  +    GA+TGE S   LKD+GC++V+LGHSERR + GE DQ I  K   AL  GL  I C+GE L+ERE+G+   V  QQL A      I  + +VVIAYEPVWAI
Sbjct:    3 QLFVAGNWKMHGDKASIKTLVTGLNAKADSVGDVLVAVCPPAIYLDYTKNCLMAGEIALGGQNMAIEPVQGAYTGETSASMLKDVGCQYVILGHSERRAIYGETDQDIAAKVKTALDSGLTPILCVGETLEERESGQLESVISQQLDAVISEVGIDQFADVVIAYEPVWAI 173          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_PLAFA (Triosephosphate isomerase OS=Plasmodium falciparum GN=TPI PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.609e-29
Identity = 63/169 (37.28%), Postives = 94/169 (55.62%), Query Frame = 1
Query:  238 SNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXF-VYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPXWDNVVIAYEPVWAI 741
            + K+FV  NWKCNGT ESI  L +  N+   +            V+ D  +  L  +     QN      G++TGE+S E  KD+  ++V++GH ERR    E D+ + +K   +L   L  + C GE L++RE  KT +V  +Q+KA+ D I  +DNV++AYEP+WAI
Sbjct:    2 ARKYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHYDHTRKLLQSKFSTGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNNLKAVVCFGESLEQREQNKTIEVITKQVKAFVDLIDNFDNVILAYEPLWAI 170          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_PLAF7 (Triosephosphate isomerase OS=Plasmodium falciparum (isolate 3D7) GN=TPI PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.609e-29
Identity = 63/169 (37.28%), Postives = 94/169 (55.62%), Query Frame = 1
Query:  238 SNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXF-VYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPXWDNVVIAYEPVWAI 741
            + K+FV  NWKCNGT ESI  L +  N+   +            V+ D  +  L  +     QN      G++TGE+S E  KD+  ++V++GH ERR    E D+ + +K   +L   L  + C GE L++RE  KT +V  +Q+KA+ D I  +DNV++AYEP+WAI
Sbjct:    2 ARKYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHYDHTRKLLQSKFSTGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNNLKAVVCFGESLEQREQNKTIEVITKQVKAFVDLIDNFDNVILAYEPLWAI 170          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPI1_GIALA (Triosephosphate isomerase OS=Giardia lamblia PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.609e-29
Identity = 70/169 (41.42%), Postives = 104/169 (61.54%), Query Frame = 1
Query:  250 FVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQ-VKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKA----YADAIPXWDNVVIAYEPVWAI 741
            F+GGN+KCNG+ + I   V+ +   K+            V++   +  + + ++ IAAQN ++   GA+TGE SVE L+D+G K V++GHSERR ++GE D+   KKA  AL +G+ VI C+GE L ER+A +T +V   QL+A      ++   W  VVIAYEPVW+I
Sbjct:    7 FIGGNFKCNGSLDFIKSHVAAIAAHKIPDSVDVVIAPSAVHLSTAIAANTSKQLRIAAQNVYLEGNGAWTGETSVEMLQDMGLKHVIVGHSERRRIMGETDEQSAKKAKRALEKGMTVIFCVGETLDERKANRTMEVNIAQLEALGKELGESKMLWKEVVIAYEPVWSI 175          
The following BLAST results are available for this feature:
BLAST of FC921481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_PSEE41.059e-3044.31Triosephosphate isomerase OS=Pseudomonas entomophi... [more]
TPIS_ALKOO1.807e-3042.01Triosephosphate isomerase OS=Alkaliphilus oremland... [more]
TPIS_DICDI4.025e-3040.23Triosephosphate isomerase OS=Dictyostelium discoid... [more]
TPIS_LAWIP6.866e-3045.66Triosephosphate isomerase OS=Lawsonia intracellula... [more]
TPI2_GIALA6.866e-3042.60Triosephosphate isomerase OS=Giardia lamblia PE=3 ... [more]
TPISL_HUMAN8.967e-3042.35Putative triosephosphate isomerase-like protein LO... [more]
TPIS_THICR1.998e-2945.61Triosephosphate isomerase OS=Thiomicrospira crunog... [more]
TPIS_PLAFA2.609e-2937.28Triosephosphate isomerase OS=Plasmodium falciparum... [more]
TPIS_PLAF72.609e-2937.28Triosephosphate isomerase OS=Plasmodium falciparum... [more]
TPI1_GIALA2.609e-2941.42Triosephosphate isomerase OS=Giardia lamblia PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionC32105D12EF RVDevelopN Citrus clementina cDNA clone C32105D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921481 ID=FC921481; Name=FC921481; organism=Citrus clementina; type=EST; length=742bp
GACATACACAAAGGCTGAGCAAGAGCAAGAGCAAGAGCCAAAGCAGCTGA
GATTATAATTTGACTTTCACTTTGACTTTTCACAATGGCGTCAATGGTCT
CCACAAACTGCGCTCAATTCTCCGGCCTGCGCCGCTCATCGCCCACACAG
TCTTTTTCACAGCACGTCAACTCTCACCTCCGCCTCTTCTCTTCTCGTAG
ACCTCGCCGCGGCAGCAGCGTTGTCGCCATGGCCAGCTCCAACAAGTTCT
TTGTTGGGGGAAACTGGAAGTGTAATGGAACAAAGGAATCTATCACCAAG
CTTGTTTCGGACCTGAACGATGCAAAGTTGGAGGCAGATGTTGATGTTGT
GGTAGCGCCTCCCTTTGTTTACATTGATCAAGTGAAGAATTCATTAACAG
ATAGAATTGAGATAGCAGCTCAGAACTCTTGGGTCGGAAAAGGTGGAGCA
TTTACAGGAGAAATCAGTGTGGAACAACTGAAAGATATTGGCTGCAAGTG
GGTTGTTCTGGGGCATTCTGAGCGCAGACATGTTATTGGTGAAGATGATC
AGTTTATAGGGAAGAAAGCTGCCTATGCCTTGAGCGAGGGACTTGGTGTA
ATAGCTTGTATCGGGGAACAGTTGCAAGAGAGAGAAGCAGGAAAAACTTT
TGATGTCTGTTTTCAGCAACTTAAAGCCTATGCAGATGCTATACCCAGNT
GGGATAATGTAGTCATTGCATATGAGCCTGTATGGGCTATTG
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