FC921481

Overview
NameFC921481
Unique NameFC921481
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length742
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_PSEAB (Triosephosphate isomerase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=tpiA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.393e-28
Identity = 70/167 (41.92%), Postives = 96/167 (57.49%), Query Frame = 1
Query:  253 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDR-IEIAAQNSWVGK-GGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYAD--AIPXWDNVVIAYEPVWAI 741
            V GNWK +GT  S+ +L+  L    L            ++I QV   L  + I++ AQNS V    GA TGE +  QL D+GC  V++GHSERR ++GE D+ + +K A A S GL  + C+GE   EREAGKT +V  +QL +  D   +  +   V+AYEPVWAI
Sbjct:    6 VAGNWKMHGTHSSVAELIKGLRQLALPSGVDVAVMPPCLFISQVIQGLAGKAIDVGAQNSAVEPMQGALTGETAPSQLADVGCSMVLVGHSERRLILGESDEVVSRKFAAAQSCGLVPVLCVGETRAEREAGKTLEVVARQLGSVIDELGVGAFARAVVAYEPVWAI 172          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_PSEA8 (Triosephosphate isomerase OS=Pseudomonas aeruginosa (strain LESB58) GN=tpiA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.393e-28
Identity = 70/167 (41.92%), Postives = 96/167 (57.49%), Query Frame = 1
Query:  253 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDR-IEIAAQNSWVGK-GGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYAD--AIPXWDNVVIAYEPVWAI 741
            V GNWK +GT  S+ +L+  L    L            ++I QV   L  + I++ AQNS V    GA TGE +  QL D+GC  V++GHSERR ++GE D+ + +K A A S GL  + C+GE   EREAGKT +V  +QL +  D   +  +   V+AYEPVWAI
Sbjct:    6 VAGNWKMHGTHSSVAELIKGLRQLALPSGVDVAVMPPCLFISQVIQGLAGKAIDVGAQNSAVEPMQGALTGETAPSQLADVGCSMVLVGHSERRLILGESDEVVSRKFAAAQSCGLVPVLCVGETRAEREAGKTLEVVARQLGSVIDELGVGAFARAVVAYEPVWAI 172          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_PELCD (Triosephosphate isomerase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.393e-28
Identity = 69/168 (41.07%), Postives = 94/168 (55.95%), Query Frame = 1
Query:  250 FVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXX-FVYIDQVKNSLTDR-IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAI--PXWDNVVIAYEPVWAI 741
            F+ GNWK + T      LV +L  A  +           F  +  V  +L    I +AAQN +    GAFTGE+S   LKD GC++V++GHSERR +  E D FI +K    +  GL  I CIGE L+EREA KTFDV  +Q++   + +     + +V+AYEPVWAI
Sbjct:    5 FIAGNWKLHKTSAEAAALVGELKGALSDVVDRDIVVAPVFTSLAAVIATLEKSDISVAAQNCYPENQGAFTGEVSPALLKDAGCRYVIVGHSERRQLFAESDAFINRKVKAVIDAGLSAILCIGETLEEREADKTFDVLERQVRCGLEGLDAAAMEQIVVAYEPVWAI 172          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_YERE8 (Triosephosphate isomerase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=tpiA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.432e-27
Identity = 69/167 (41.32%), Postives = 96/167 (57.49%), Query Frame = 1
Query:  253 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAI--PXWDNVVIAYEPVWAI 741
            V GNWK NG+   + +L+++L  +               +Y++Q K+ L+  RI + AQN  V   GAFTGE S E LKDIG +++++GHSERR    E D+FI KK       GL  + CIGE   E EAG+T  VC +QL A  + +    ++  VIAYEP+WAI
Sbjct:    6 VMGNWKLNGSTHMVNELIANLRKELSTVEGCGVAIAPPAIYLNQAKHELSGSRIALGAQNVDVNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDEFIAKKFGVLKEVGLTPVLCIGETEAENEAGQTEAVCAKQLDAVLNTLGAKAFEGAVIAYEPIWAI 172          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_ALCBS (Triosephosphate isomerase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=tpiA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.432e-27
Identity = 65/165 (39.39%), Postives = 96/165 (58.18%), Query Frame = 1
Query:  253 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADA--IPXWDNVVIAYEPVWAI 741
            V GNWK NG K+ +T++   L  A             F Y+   ++++   + I +QN    + GAFTGE+S   L ++GC +V++GHSERR + GE D  I  K A+A + GL  I C+GE L+ER++G T  +   QL+A  DA  +  + N ++AYEPVWAI
Sbjct:    7 VAGNWKMNGRKDLLTEMADAL--AGYAGAAEVVICPPFPYLAAARSAMPGAVGIGSQNVSEQEDGAFTGEVSAPMLAEVGCGYVIIGHSERRALYGETDAQIASKFAHAQAAGLVPILCVGETLEERDSGNTDTIVCGQLRAVVDAVGVAAFANAIVAYEPVWAI 169          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_TREDE (Triosephosphate isomerase OS=Treponema denticola GN=tpiA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.189e-27
Identity = 69/169 (40.83%), Postives = 92/169 (54.44%), Query Frame = 1
Query:  244 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAI--PXWDNVVIAYEPVWAI 741
            KF++  NWK N  +    +L +++     +          F  +  V + L    I + AQN  + + GA TGE+SV QL D+G + V+LGHSERRH+  E D  I KK   AL  GL VI C+GE L+EREAG    VC +Q+K     +     D V IAYEPVWAI
Sbjct:    3 KFYIAANWKMNMNRAEAKQLATEMKAGLKDGKNKYMIAPSFTLLQDVASVLKGSNILLGAQNMGLEEKGAHTGEVSVLQLLDVGVQAVILGHSERRHIYKETDDLINKKVKLALKHGLEVILCVGELLEEREAGHAEAVCERQIKKGLAEVSAKDLDKVTIAYEPVWAI 171          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_PSEA7 (Triosephosphate isomerase OS=Pseudomonas aeruginosa (strain PA7) GN=tpiA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.165e-27
Identity = 71/167 (42.51%), Postives = 94/167 (56.29%), Query Frame = 1
Query:  253 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDR-IEIAAQNSWVGK-GGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYAD--AIPXWDNVVIAYEPVWAI 741
            V GNWK +GT  S+  L+  L    L            ++I QV   L  + I + AQNS V    GA TGEI+  QL D GC  V++GHSERR ++GE D+ + +K A A S GL  + C+GE   EREAGKT +V  +QL +  D   +  +   V+AYEPVWAI
Sbjct:    6 VAGNWKMHGTHSSVADLIKGLRQLALPSGVDVAVMPPCLFISQVVQGLAGKAIGVGAQNSAVEPMQGALTGEIAPSQLADAGCGMVLVGHSERRLILGESDEVVSRKFAAAQSCGLVPVLCVGETRAEREAGKTLEVVARQLGSVIDELGVGAFARAVVAYEPVWAI 172          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_ENTCL (Triosephosphate isomerase OS=Enterobacter cloacae GN=tpiA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.165e-27
Identity = 71/167 (42.51%), Postives = 95/167 (56.89%), Query Frame = 1
Query:  253 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPXWDNVVIAYEPVWAI 741
            V GNWK NG++  + +LV++L  +               +Y+D  K++     I + AQN  V   GAFTGE S E LKDIG K++++GHSERR    E D+FI KK A    +GL  + CIGE   E EAGKT +VC +Q+ A         ++  VIAYEPVWAI
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRKELAGVTGCAVAIAPPDMYLDLAKHAADGSHIILGAQNVDVNLSGAFTGETSAEMLKDIGAKYIIIGHSERRTYHKESDEFIAKKFAVLKEQGLIPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAI 172          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_ENT38 (Triosephosphate isomerase OS=Enterobacter sp. (strain 638) GN=tpiA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.165e-27
Identity = 70/167 (41.92%), Postives = 95/167 (56.89%), Query Frame = 1
Query:  253 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPXWDNVVIAYEPVWAI 741
            V GNWK NG++  + +L+++L  +               +Y+D  K++     I + AQN  V   GAFTGE S E LKDIG K++++GHSERR    E D+ I KK A    +GL  + CIGE   E EAGKT +VC +Q+ A         ++ VVIAYEPVWAI
Sbjct:    6 VMGNWKLNGSRHMVNELIANLRKELAGVTGCAVAIAPPDIYLDLAKHAADGSHIVLGAQNVDVNLSGAFTGETSAEMLKDIGAKYIIIGHSERRTYHKESDELIAKKFAVLKEQGLIPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGASAFEGVVIAYEPVWAI 172          
BLAST of FC921481 vs. ExPASy Swiss-Prot
Match: TPIS_MARAV (Triosephosphate isomerase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=tpiA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.440e-27
Identity = 65/167 (38.92%), Postives = 91/167 (54.49%), Query Frame = 1
Query:  253 VGGNWKCNGTKESITKLVSDLND--AKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIP--XWDNVVIAYEPVWAI 741
            V GNWK NG+K+ + +LV  + +    +            +Y+DQV      RI   AQN    + GA+TGEIS E  +D+GC +V++GHSERR + GE D     K    L  GL  + C+GE L EREA +   V  +Q+++    +    W  VV+AYEPVWAI
Sbjct:    6 VAGNWKMNGSKDLVKQLVGAVREQSGSVGEDVEVVIIPPAIYLDQVAEQGGGRITTGAQNVSQWQSGAYTGEISAEMARDMGCGYVLVGHSERRQLFGETDSVAAAKVEQVLLSGLVAVLCVGETLAEREADQAEAVVAEQVRSGLSVVADGQWSRVVVAYEPVWAI 172          
The following BLAST results are available for this feature:
BLAST of FC921481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_PSEAB8.393e-2841.92Triosephosphate isomerase OS=Pseudomonas aeruginos... [more]
TPIS_PSEA88.393e-2841.92Triosephosphate isomerase OS=Pseudomonas aeruginos... [more]
TPIS_PELCD8.393e-2841.07Triosephosphate isomerase OS=Pelobacter carbinolic... [more]
TPIS_YERE81.432e-2741.32Triosephosphate isomerase OS=Yersinia enterocoliti... [more]
TPIS_ALCBS1.432e-2739.39Triosephosphate isomerase OS=Alcanivorax borkumens... [more]
TPIS_TREDE3.189e-2740.83Triosephosphate isomerase OS=Treponema denticola G... [more]
TPIS_PSEA74.165e-2742.51Triosephosphate isomerase OS=Pseudomonas aeruginos... [more]
TPIS_ENTCL4.165e-2742.51Triosephosphate isomerase OS=Enterobacter cloacae ... [more]
TPIS_ENT384.165e-2741.92Triosephosphate isomerase OS=Enterobacter sp. (str... [more]
TPIS_MARAV5.440e-2738.92Triosephosphate isomerase OS=Marinobacter aquaeole... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32105D12EF RVDevelopN Citrus clementina cDNA clone C32105D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921481 ID=FC921481; Name=FC921481; organism=Citrus clementina; type=EST; length=742bp
GACATACACAAAGGCTGAGCAAGAGCAAGAGCAAGAGCCAAAGCAGCTGA
GATTATAATTTGACTTTCACTTTGACTTTTCACAATGGCGTCAATGGTCT
CCACAAACTGCGCTCAATTCTCCGGCCTGCGCCGCTCATCGCCCACACAG
TCTTTTTCACAGCACGTCAACTCTCACCTCCGCCTCTTCTCTTCTCGTAG
ACCTCGCCGCGGCAGCAGCGTTGTCGCCATGGCCAGCTCCAACAAGTTCT
TTGTTGGGGGAAACTGGAAGTGTAATGGAACAAAGGAATCTATCACCAAG
CTTGTTTCGGACCTGAACGATGCAAAGTTGGAGGCAGATGTTGATGTTGT
GGTAGCGCCTCCCTTTGTTTACATTGATCAAGTGAAGAATTCATTAACAG
ATAGAATTGAGATAGCAGCTCAGAACTCTTGGGTCGGAAAAGGTGGAGCA
TTTACAGGAGAAATCAGTGTGGAACAACTGAAAGATATTGGCTGCAAGTG
GGTTGTTCTGGGGCATTCTGAGCGCAGACATGTTATTGGTGAAGATGATC
AGTTTATAGGGAAGAAAGCTGCCTATGCCTTGAGCGAGGGACTTGGTGTA
ATAGCTTGTATCGGGGAACAGTTGCAAGAGAGAGAAGCAGGAAAAACTTT
TGATGTCTGTTTTCAGCAACTTAAAGCCTATGCAGATGCTATACCCAGNT
GGGATAATGTAGTCATTGCATATGAGCCTGTATGGGCTATTG
back to top