FC921493

Overview
NameFC921493
Unique NameFC921493
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length667
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_CLOBH (ATP-dependent Clp protease proteolytic subunit OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=clpP PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.099e-39
Identity = 78/120 (65.00%), Postives = 96/120 (80.00%), Query Frame = 1
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSI 651
            D  + LL+ RII L  +V+D TA  I++QLLFL+AED  KDI L+INSPGGS+T+GM IYD M+  K DVSTIC+G+AASMGAFLLAAG+KGKRY +PN+ VMIHQPLG   G+ATD+ I
Sbjct:   19 DIYSRLLKDRIIMLSEEVNDTTASLIVAQLLFLEAEDPDKDIHLYINSPGGSITSGMAIYDTMQYIKPDVSTICVGMAASMGAFLLAAGAKGKRYALPNSEVMIHQPLGGFRGQATDIGI 138          
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_CLOB1 (ATP-dependent Clp protease proteolytic subunit OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=clpP PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.099e-39
Identity = 78/120 (65.00%), Postives = 96/120 (80.00%), Query Frame = 1
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSI 651
            D  + LL+ RII L  +V+D TA  I++QLLFL+AED  KDI L+INSPGGS+T+GM IYD M+  K DVSTIC+G+AASMGAFLLAAG+KGKRY +PN+ VMIHQPLG   G+ATD+ I
Sbjct:   19 DIYSRLLKDRIIMLSEEVNDTTASLIVAQLLFLEAEDPDKDIHLYINSPGGSITSGMAIYDTMQYIKPDVSTICVGMAASMGAFLLAAGAKGKRYALPNSEVMIHQPLGGFRGQATDIGI 138          
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_CARHZ (ATP-dependent Clp protease proteolytic subunit OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=clpP PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.099e-39
Identity = 77/125 (61.60%), Postives = 98/125 (78.40%), Query Frame = 1
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL+ R IF+G  +DD  A+ +I+Q+LFL+AED +KDI L+INSPGG +TAGM IYD M+  K DVSTIC+G AASMGAFLLAAG+KGKR+ +P AR+MIHQPLG   G+ATD+ I  RE+
Sbjct:   20 DIWSRLLKDRTIFIGGPIDDHVANLVIAQMLFLEAEDPEKDIHLYINSPGGVITAGMAIYDTMQYIKPDVSTICIGQAASMGAFLLAAGAKGKRFSLPYARIMIHQPLGGVQGQATDIDIHAREI 144          
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNY3 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechocystis sp. (strain PCC 6803) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.099e-39
Identity = 79/125 (63.20%), Postives = 100/125 (80.00%), Query Frame = 1
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LLR+RIIFLG+ VDD  AD I++QLLFLDAED +KDI+L+INSPGGSV AG+ IYD M+  + DV TIC GLAASMGAFLL+ G KGKR  +P++R+MIHQPLG A G+A ++ I+ RE+
Sbjct:   39 DIYSRLLRERIIFLGTPVDDQVADSIVAQLLFLDAEDPEKDIQLYINSPGGSVYAGLAIYDTMQQIRPDVVTICFGLAASMGAFLLSGGCKGKRMALPSSRIMIHQPLGGAQGQAVEIEIQAREI 163          
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_METPP (ATP-dependent Clp protease proteolytic subunit OS=Methylibium petroleiphilum (strain PM1) GN=clpP PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.659e-39
Identity = 76/125 (60.80%), Postives = 103/125 (82.40%), Query Frame = 1
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LLR+R+IFL   V+D TA+ +++QLLFL++E+  KDI L+INSPGGSV+AG+ I+D M+  K DVST+C+G+AASMGAFLLAAG+KGKR+ +PN+RVMIHQP G A G+ATD+ I+ RE+
Sbjct:   27 DIYSRLLRERVIFLVGPVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAGLSIFDTMQFIKPDVSTLCMGIAASMGAFLLAAGAKGKRFALPNSRVMIHQPSGGAQGQATDIEIQAREI 151          
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_METFK (ATP-dependent Clp protease proteolytic subunit OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=clpP PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.659e-39
Identity = 77/125 (61.60%), Postives = 101/125 (80.80%), Query Frame = 1
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL++RIIFL   V+D TA+ +++QLLFL+AE+  KDI  +INSPGGSVTAGMGIYD M+  K DVST+C+G AASMGA LLAAG++GKR+C+PN+RVMIHQPLG   G+A+D+ I  +E+
Sbjct:   35 DIYSRLLKERIIFLVGPVNDATANLVVAQLLFLEAENPDKDIYFYINSPGGSVTAGMGIYDTMQFVKPDVSTLCVGQAASMGALLLAAGAQGKRFCLPNSRVMIHQPLGGFQGQASDIEIHAKEI 159          
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_EUBR3 (ATP-dependent Clp protease proteolytic subunit OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=clpP PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.659e-39
Identity = 76/120 (63.33%), Postives = 96/120 (80.00%), Query Frame = 1
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSI 651
            D  + LL+ RIIFLG +V++ TA  +++QLLFL++ED  KDI L+INSPGG VTAG+ IYD M+  K DVSTIC+GLAASMGAFLLA G+KGKRY +PNA +MIHQP G A G+AT++ I
Sbjct:   19 DIYSRLLKDRIIFLGEEVNETTASLVVAQLLFLESEDPNKDIHLYINSPGGMVTAGLAIYDTMQYIKCDVSTICIGLAASMGAFLLAGGAKGKRYALPNAEIMIHQPSGGAKGQATEIQI 138          
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_EDWI9 (ATP-dependent Clp protease proteolytic subunit OS=Edwardsiella ictaluri (strain 93-146) GN=clpP PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.659e-39
Identity = 76/125 (60.80%), Postives = 101/125 (80.80%), Query Frame = 1
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL++RIIFL  QV+D  A+ I++Q+LFL+AE+ +KDI L+INSPGG +TAGM IYD M+  K DVSTIC+G A SMG+FLLAAG++GKR+C+PN+RVMIHQPLG   G+ATD+ I  +E+
Sbjct:   31 DIFSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAENPEKDIHLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGSFLLAAGAQGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAKEI 155          
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_BACSU (ATP-dependent Clp protease proteolytic subunit OS=Bacillus subtilis GN=clpP PE=1 SV=3)

HSP 1 Score: 160.614 bits (405), Expect = 6.659e-39
Identity = 79/125 (63.20%), Postives = 98/125 (78.40%), Query Frame = 1
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL+ RII LGS +DD  A+ I+SQLLFL AED +K+I L+INSPGGS+TAGM IYD M+  K  VSTIC+G+AASMGAFLLAAG KGKRY +PN+ VMIHQPLG A G+AT++ I  + +
Sbjct:   19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRI 143          
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_PSEPG (ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas putida (strain GB-1) GN=clpP PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.697e-39
Identity = 76/125 (60.80%), Postives = 99/125 (79.20%), Query Frame = 1
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL++R+IFL   V+D  A+ +++Q+LFL+AE+  KDI L+INSPGGSVTAGM IYD M+  K DVSTIC+G A SMGAFLL AG+KGKR+C+PN+RVMIHQPLG   G+ATD+ I  +E+
Sbjct:   35 DIYSRLLKERVIFLVGPVEDYMANLVVAQMLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLTAGAKGKRHCLPNSRVMIHQPLGGFQGQATDIQIHAQEI 159          
The following BLAST results are available for this feature:
BLAST of FC921493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_CLOBH5.099e-3965.00ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CLOB15.099e-3965.00ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CARHZ5.099e-3961.60ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_SYNY35.099e-3963.20ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_METPP6.659e-3960.80ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_METFK6.659e-3961.60ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_EUBR36.659e-3963.33ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_EDWI96.659e-3960.80ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BACSU6.659e-3963.20ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PSEPG8.697e-3960.80ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionC32105F02EF RVDevelopN Citrus clementina cDNA clone C32105F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921493 ID=FC921493; Name=FC921493; organism=Citrus clementina; type=EST; length=667bp
GAAACCACCCAGCAAACAAATCCAAATAAGAAGATGGAGATGAGTTTGAC
AGCATCTTCATTTTCGAAGCCACTCTTCTTCTCAAACCAATCCCTATCGA
AAACCCACTTTCTCACTGCCGCTAATAACACTAACACTAGCACTACAATC
AAAACGAGGAGACCCACTTGCATAAAGGCCGCGAATAGTTCACCTTCAAT
AGCACAGACCTTGTCTACCAACTGGGATGTCTCCAATTTTGCTGTTAATA
ATAATACTTCATCTCCATATCTGCCCAAATTTGAGGAGCTTGACACCACT
AACATGCTTCTCCGTCAGAGAATTATCTTCTTGGGATCCCAGGTTGATGA
CTTGACTGCTGATTTCATCATAAGTCAGCTCTTATTTCTTGACGCCGAAG
ATTCTAAAAAAGATATCAGGTTGTTTATTAATTCACCTGGTGGCTCTGTT
ACTGCTGGAATGGGAATATATGATGCAATGAAGTTATGCAAGGCTGATGT
TTCAACTATTTGCTTGGGGCTTGCTGCATCTATGGGTGCATTCCTGCTAG
CAGCTGGTTCAAAAGGGAAGAGATATTGCATGCCTAATGCAAGAGTAATG
ATCCATCAACCTCTTGGGACTGCTGGAGGCAAAGCAACAGATATGAGCAT
ACGGATTAGAGAGATGT
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