FC921493

Overview
NameFC921493
Unique NameFC921493
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length667
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_PSEE4 (ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas entomophila (strain L48) GN=clpP PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.697e-39
Identity = 77/125 (61.60%), Postives = 99/125 (79.20%), Query Frame = 1
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL++R+IFL   V+D  A+ +++QLLFL+AE+  KDI L+INSPGGSVTAGM IYD M+  K DVSTIC+G A SMGAFLLAAG+ GKR+C+PN+RVMIHQPLG   G+ATD+ I  +E+
Sbjct:   35 DIYSRLLKERVIFLVGPVEDYMANLVVAQLLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAAGAAGKRHCLPNSRVMIHQPLGGFQGQATDIEIHAQEI 159          
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_PSEA6 (ATP-dependent Clp protease proteolytic subunit OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=clpP PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.697e-39
Identity = 76/125 (60.80%), Postives = 99/125 (79.20%), Query Frame = 1
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL++ +IF+  QV+D  A+ I++Q+LFL+AE+ +KDI L+INSPGGSVTAGM IYD M   K DVST+C+G AASMGAFLL+ G+KGKRYC+PNARVMIHQPLG   G+A+D  I  +E+
Sbjct:   28 DIYSRLLKENVIFMVGQVEDHMANLIVAQMLFLEAENPEKDIFLYINSPGGSVTAGMAIYDTMNFIKPDVSTVCIGQAASMGAFLLSGGAKGKRYCLPNARVMIHQPLGGFQGQASDFEIHAKEI 152          
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_CLOTE (ATP-dependent Clp protease proteolytic subunit OS=Clostridium tetani GN=clpP PE=3 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 8.697e-39
Identity = 77/120 (64.17%), Postives = 97/120 (80.83%), Query Frame = 1
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSI 651
            D  + LL+ RII L  QV+D+TA  I++QLLFL+AED  KDI L+INSPGGS+T+GM IYD M+  K DVSTIC+G+AASMGAFLLAAG+KGKR+ +PN+ +MIHQPLG   G+ATD+ I
Sbjct:   19 DIYSRLLKDRIIMLSDQVNDVTASLIVAQLLFLEAEDPDKDIFLYINSPGGSITSGMAIYDTMQYIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGFQGQATDIGI 138          
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP2_THEEB (ATP-dependent Clp protease proteolytic subunit 2 OS=Thermosynechococcus elongatus (strain BP-1) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.697e-39
Identity = 80/134 (59.70%), Postives = 103/134 (76.87%), Query Frame = 1
Query:  265 PYLPKFEELDTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            P  P  + +D  N L R+RIIFLG +VDD  A+ I++ +L+LD+ED  KDI L+INSPGGSVTAGM IYD M+  K+DV TIC+GLAASMG+FLLAAG+KGKR  +P++R+MIHQP G   G+ATD+ I  RE+
Sbjct:   13 PGEPYTQWIDIYNRLYRERIIFLGKEVDDEIANQIVAVMLYLDSEDPGKDIMLYINSPGGSVTAGMAIYDTMQHIKSDVVTICVGLAASMGSFLLAAGTKGKRLALPHSRIMIHQPSGGTRGQATDIEIEAREI 146          
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP2_BACSK (ATP-dependent Clp protease proteolytic subunit 2 OS=Bacillus clausii (strain KSM-K16) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.697e-39
Identity = 79/125 (63.20%), Postives = 96/125 (76.80%), Query Frame = 1
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL+ RII LGS VDD  A+ I++Q+LFL AED +KDI L+INSPGGS+TAGM IYD M+  K DVSTIC+G+AASMGAFLL AG+KGKR  +PN+ VMIHQPLG   G+A DM I  R +
Sbjct:   19 DIYSRLLKDRIIMLGSGVDDNVANSIVAQMLFLQAEDPEKDISLYINSPGGSITAGMAIYDTMQFIKPDVSTICIGMAASMGAFLLTAGAKGKRMALPNSEVMIHQPLGGMQGQAADMEIHARRI 143          
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP1_THEEB (ATP-dependent Clp protease proteolytic subunit 1 OS=Thermosynechococcus elongatus (strain BP-1) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.697e-39
Identity = 82/131 (62.60%), Postives = 99/131 (75.57%), Query Frame = 1
Query:  292 DTTNMLLRQRIIFLGSQ------VDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LLR+RIIFLG        +DD  AD I++QLLFLDAED +KDI L+INSPGGSVTAGM IYD MK  + DV T+C GLAASMGAFLL+ G+ GKR  +PNAR+MIHQPLG A G+A D+ I+ RE+
Sbjct:   44 DIYSRLLRERIIFLGGGAGDRRGIDDAVADSIVAQLLFLDAEDPEKDIYLYINSPGGSVTAGMAIYDTMKHIRPDVCTLCFGLAASMGAFLLSGGTPGKRMALPNARIMIHQPLGGAQGQAVDIEIQAREI 174          
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_STAS1 (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=clpP PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.136e-38
Identity = 78/120 (65.00%), Postives = 98/120 (81.67%), Query Frame = 1
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSI 651
            D  + LL+ RII LGSQ+DD  A+ I+SQLLFL A+D++KDI L+INSPGGSVTAG  IYD ++  K DV TIC+G+AASMG+FLLAAG+KGKR+ +PNA VMIHQPLG A G+AT++ I
Sbjct:   19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEI 138          
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_ERWCT (ATP-dependent Clp protease proteolytic subunit OS=Erwinia carotovora subsp. atroseptica GN=clpP PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.136e-38
Identity = 76/125 (60.80%), Postives = 99/125 (79.20%), Query Frame = 1
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL++RIIFL  QV+D  A+ +++Q+LFL+AE+ +KDI L+INSPGG +TAGM IYD M+  K DVSTIC+G A SMGAFLL AG+KGKR C+PN+RVMIHQPLG   G+ATD+ I  +E+
Sbjct:   32 DIYSRLLKERIIFLTGQVEDYMANLVVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLTAGAKGKRICLPNSRVMIHQPLGGFQGQATDIEIHAKEI 156          
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_DESPS (ATP-dependent Clp protease proteolytic subunit OS=Desulfotalea psychrophila GN=clpP PE=3 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.136e-38
Identity = 77/125 (61.60%), Postives = 100/125 (80.00%), Query Frame = 1
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL++RIIFLGS V+D  A+ I++QLLFL+AED +KDI  +INSPGGSVTAGM IYD M+  K D++T+C+G AASMGA LLAAG+ GKRY +PN+R+MIHQPLG   G+ATD+ I  +E+
Sbjct:   19 DIYSRLLKERIIFLGSGVNDDVANVIVAQLLFLEAEDPEKDITFYINSPGGSVTAGMAIYDTMQYIKCDIATLCMGQAASMGAVLLAAGTAGKRYALPNSRIMIHQPLGGFQGQATDIEIHTKEI 143          
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP3_PROMA (ATP-dependent Clp protease proteolytic subunit 3 OS=Prochlorococcus marinus GN=clpP3 PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.136e-38
Identity = 76/125 (60.80%), Postives = 101/125 (80.80%), Query Frame = 1
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LLR+RIIFLG+ V+D  AD +++Q+LFL+AED +KDI+L+INSPGGSVTAG+ IYD M+    D+ T+C GLAASMGAFLLA GSKGKR  +PN+R+MIHQPLG A G+A ++ I+ +E+
Sbjct:   41 DIYSRLLRERIIFLGTDVNDQIADALVAQMLFLEAEDPEKDIQLYINSPGGSVTAGLAIYDTMQQVNPDIVTMCYGLAASMGAFLLAGGSKGKRLALPNSRIMIHQPLGGAQGQAVEIEIQAKEI 165          
The following BLAST results are available for this feature:
BLAST of FC921493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_PSEE48.697e-3961.60ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PSEA68.697e-3960.80ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CLOTE8.697e-3964.17ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_THEEB8.697e-3959.70ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP2_BACSK8.697e-3963.20ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_THEEB8.697e-3962.60ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_STAS11.136e-3865.00ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ERWCT1.136e-3860.80ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_DESPS1.136e-3861.60ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP3_PROMA1.136e-3860.80ATP-dependent Clp protease proteolytic subunit 3 O... [more]

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Properties
Property NameValue
Genbank descriptionC32105F02EF RVDevelopN Citrus clementina cDNA clone C32105F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921493 ID=FC921493; Name=FC921493; organism=Citrus clementina; type=EST; length=667bp
GAAACCACCCAGCAAACAAATCCAAATAAGAAGATGGAGATGAGTTTGAC
AGCATCTTCATTTTCGAAGCCACTCTTCTTCTCAAACCAATCCCTATCGA
AAACCCACTTTCTCACTGCCGCTAATAACACTAACACTAGCACTACAATC
AAAACGAGGAGACCCACTTGCATAAAGGCCGCGAATAGTTCACCTTCAAT
AGCACAGACCTTGTCTACCAACTGGGATGTCTCCAATTTTGCTGTTAATA
ATAATACTTCATCTCCATATCTGCCCAAATTTGAGGAGCTTGACACCACT
AACATGCTTCTCCGTCAGAGAATTATCTTCTTGGGATCCCAGGTTGATGA
CTTGACTGCTGATTTCATCATAAGTCAGCTCTTATTTCTTGACGCCGAAG
ATTCTAAAAAAGATATCAGGTTGTTTATTAATTCACCTGGTGGCTCTGTT
ACTGCTGGAATGGGAATATATGATGCAATGAAGTTATGCAAGGCTGATGT
TTCAACTATTTGCTTGGGGCTTGCTGCATCTATGGGTGCATTCCTGCTAG
CAGCTGGTTCAAAAGGGAAGAGATATTGCATGCCTAATGCAAGAGTAATG
ATCCATCAACCTCTTGGGACTGCTGGAGGCAAAGCAACAGATATGAGCAT
ACGGATTAGAGAGATGT
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