FC921493

Overview
NameFC921493
Unique NameFC921493
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length667
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_THEMA (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga maritima GN=clpP PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 7.866e-40
Identity = 80/125 (64.00%), Postives = 98/125 (78.40%), Query Frame = 1 
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL+ RI+FLGS +DD  A+ +I+QLLFL+AED  KD+ L+INSPGGSVTAG+ IYD M+  K DVSTIC+G AASM A LLAAG+KGKRY +PNAR+MIHQPLG A G A D+ I  RE+
Sbjct:   28 DIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPGGSVTAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEGPAKDVEIITREL 152
[Close]
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_GEOKA (ATP-dependent Clp protease proteolytic subunit OS=Geobacillus kaustophilus GN=clpP PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 7.866e-40
Identity = 78/125 (62.40%), Postives = 100/125 (80.00%), Query Frame = 1 
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL+ RI+FLGS +DD  A+ I+SQLLFL AED  KDI L+INSPGGS+TAG+ IYD M+  K DVSTIC+G+AASMGAFLLAAG+KGKR+ +PN+ +MIHQPLG A G+AT++ I  + +
Sbjct:   19 DIYSRLLKDRIVFLGSPIDDQVANSIVSQLLFLAAEDPDKDISLYINSPGGSITAGLAIYDTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGAQGQATEIEIAAKRI 143
[Close]
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_SHISS (ATP-dependent Clp protease proteolytic subunit OS=Shigella sonnei (strain Ss046) GN=clpP PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.027e-39
Identity = 78/125 (62.40%), Postives = 101/125 (80.80%), Query Frame = 1 
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL++R+IFL  QV+D  A+ I++Q+LFL+AE+ +KDI L+INSPGG +TAGM IYD M+  K DVSTIC+G AASMGAFLL AG+KGKR+C+PN+RVMIHQPLG   G+ATD+ I  RE+
Sbjct:   32 DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREI 156
[Close]
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_SHIFL (ATP-dependent Clp protease proteolytic subunit OS=Shigella flexneri GN=clpP PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.027e-39
Identity = 78/125 (62.40%), Postives = 101/125 (80.80%), Query Frame = 1 
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL++R+IFL  QV+D  A+ I++Q+LFL+AE+ +KDI L+INSPGG +TAGM IYD M+  K DVSTIC+G AASMGAFLL AG+KGKR+C+PN+RVMIHQPLG   G+ATD+ I  RE+
Sbjct:   32 DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREI 156
[Close]
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_SHIF8 (ATP-dependent Clp protease proteolytic subunit OS=Shigella flexneri serotype 5b (strain 8401) GN=clpP PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.027e-39
Identity = 78/125 (62.40%), Postives = 101/125 (80.80%), Query Frame = 1 
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL++R+IFL  QV+D  A+ I++Q+LFL+AE+ +KDI L+INSPGG +TAGM IYD M+  K DVSTIC+G AASMGAFLL AG+KGKR+C+PN+RVMIHQPLG   G+ATD+ I  RE+
Sbjct:   32 DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREI 156
[Close]
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_SHIDS (ATP-dependent Clp protease proteolytic subunit OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=clpP PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.027e-39
Identity = 78/125 (62.40%), Postives = 101/125 (80.80%), Query Frame = 1 
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL++R+IFL  QV+D  A+ I++Q+LFL+AE+ +KDI L+INSPGG +TAGM IYD M+  K DVSTIC+G AASMGAFLL AG+KGKR+C+PN+RVMIHQPLG   G+ATD+ I  RE+
Sbjct:   32 DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREI 156
[Close]
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_SHIBS (ATP-dependent Clp protease proteolytic subunit OS=Shigella boydii serotype 4 (strain Sb227) GN=clpP PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.027e-39
Identity = 78/125 (62.40%), Postives = 101/125 (80.80%), Query Frame = 1 
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL++R+IFL  QV+D  A+ I++Q+LFL+AE+ +KDI L+INSPGG +TAGM IYD M+  K DVSTIC+G AASMGAFLL AG+KGKR+C+PN+RVMIHQPLG   G+ATD+ I  RE+
Sbjct:   32 DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREI 156
[Close]
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_SALTY (ATP-dependent Clp protease proteolytic subunit OS=Salmonella typhimurium GN=clpP PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.027e-39
Identity = 78/125 (62.40%), Postives = 101/125 (80.80%), Query Frame = 1 
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL++R+IFL  QV+D  A+ I++Q+LFL+AE+ +KDI L+INSPGG +TAGM IYD M+  K DVSTIC+G AASMGAFLL AG+KGKR+C+PN+RVMIHQPLG   G+ATD+ I  RE+
Sbjct:   32 DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREI 156
[Close]
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_SALTI (ATP-dependent Clp protease proteolytic subunit OS=Salmonella typhi GN=clpP PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.027e-39
Identity = 78/125 (62.40%), Postives = 101/125 (80.80%), Query Frame = 1 
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL++R+IFL  QV+D  A+ I++Q+LFL+AE+ +KDI L+INSPGG +TAGM IYD M+  K DVSTIC+G AASMGAFLL AG+KGKR+C+PN+RVMIHQPLG   G+ATD+ I  RE+
Sbjct:   32 DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREI 156
[Close]
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_SALSV (ATP-dependent Clp protease proteolytic subunit OS=Salmonella schwarzengrund (strain CVM19633) GN=clpP PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.027e-39
Identity = 78/125 (62.40%), Postives = 101/125 (80.80%), Query Frame = 1 
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL++R+IFL  QV+D  A+ I++Q+LFL+AE+ +KDI L+INSPGG +TAGM IYD M+  K DVSTIC+G AASMGAFLL AG+KGKR+C+PN+RVMIHQPLG   G+ATD+ I  RE+
Sbjct:   32 DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREI 156
The following BLAST results are available for this feature:
BLAST of FC921493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_THEMA7.866e-4064.00ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_GEOKA7.866e-4062.40ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SHISS1.027e-3962.40ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SHIFL1.027e-3962.40ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SHIF81.027e-3962.40ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SHIDS1.027e-3962.40ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SHIBS1.027e-3962.40ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SALTY1.027e-3962.40ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SALTI1.027e-3962.40ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SALSV1.027e-3962.40ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionC32105F02EF RVDevelopN Citrus clementina cDNA clone C32105F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921493 ID=FC921493; Name=FC921493; organism=Citrus clementina; type=EST; length=667bp
GAAACCACCCAGCAAACAAATCCAAATAAGAAGATGGAGATGAGTTTGAC
AGCATCTTCATTTTCGAAGCCACTCTTCTTCTCAAACCAATCCCTATCGA
AAACCCACTTTCTCACTGCCGCTAATAACACTAACACTAGCACTACAATC
AAAACGAGGAGACCCACTTGCATAAAGGCCGCGAATAGTTCACCTTCAAT
AGCACAGACCTTGTCTACCAACTGGGATGTCTCCAATTTTGCTGTTAATA
ATAATACTTCATCTCCATATCTGCCCAAATTTGAGGAGCTTGACACCACT
AACATGCTTCTCCGTCAGAGAATTATCTTCTTGGGATCCCAGGTTGATGA
CTTGACTGCTGATTTCATCATAAGTCAGCTCTTATTTCTTGACGCCGAAG
ATTCTAAAAAAGATATCAGGTTGTTTATTAATTCACCTGGTGGCTCTGTT
ACTGCTGGAATGGGAATATATGATGCAATGAAGTTATGCAAGGCTGATGT
TTCAACTATTTGCTTGGGGCTTGCTGCATCTATGGGTGCATTCCTGCTAG
CAGCTGGTTCAAAAGGGAAGAGATATTGCATGCCTAATGCAAGAGTAATG
ATCCATCAACCTCTTGGGACTGCTGGAGGCAAAGCAACAGATATGAGCAT
ACGGATTAGAGAGATGT
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