FC921493

Overview
NameFC921493
Unique NameFC921493
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length667
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_SALNS (ATP-dependent Clp protease proteolytic subunit OS=Salmonella newport (strain SL254) GN=clpP PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.027e-39
Identity = 78/125 (62.40%), Postives = 101/125 (80.80%), Query Frame = 1 
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL++R+IFL  QV+D  A+ I++Q+LFL+AE+ +KDI L+INSPGG +TAGM IYD M+  K DVSTIC+G AASMGAFLL AG+KGKR+C+PN+RVMIHQPLG   G+ATD+ I  RE+
Sbjct:   32 DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREI 156
[Close]
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_SALHS (ATP-dependent Clp protease proteolytic subunit OS=Salmonella heidelberg (strain SL476) GN=clpP PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.027e-39
Identity = 78/125 (62.40%), Postives = 101/125 (80.80%), Query Frame = 1 
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL++R+IFL  QV+D  A+ I++Q+LFL+AE+ +KDI L+INSPGG +TAGM IYD M+  K DVSTIC+G AASMGAFLL AG+KGKR+C+PN+RVMIHQPLG   G+ATD+ I  RE+
Sbjct:   32 DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREI 156
[Close]
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_SALEP (ATP-dependent Clp protease proteolytic subunit OS=Salmonella enteritidis PT4 (strain P125109) GN=clpP PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.027e-39
Identity = 78/125 (62.40%), Postives = 101/125 (80.80%), Query Frame = 1 
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL++R+IFL  QV+D  A+ I++Q+LFL+AE+ +KDI L+INSPGG +TAGM IYD M+  K DVSTIC+G AASMGAFLL AG+KGKR+C+PN+RVMIHQPLG   G+ATD+ I  RE+
Sbjct:   32 DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREI 156
[Close]
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_SALCH (ATP-dependent Clp protease proteolytic subunit OS=Salmonella choleraesuis GN=clpP PE=3 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.027e-39
Identity = 78/125 (62.40%), Postives = 101/125 (80.80%), Query Frame = 1 
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL++R+IFL  QV+D  A+ I++Q+LFL+AE+ +KDI L+INSPGG +TAGM IYD M+  K DVSTIC+G AASMGAFLL AG+KGKR+C+PN+RVMIHQPLG   G+ATD+ I  RE+
Sbjct:   32 DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREI 156
[Close]
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_ECOUT (ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli (strain UTI89 / UPEC) GN=clpP PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.027e-39
Identity = 78/125 (62.40%), Postives = 101/125 (80.80%), Query Frame = 1 
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL++R+IFL  QV+D  A+ I++Q+LFL+AE+ +KDI L+INSPGG +TAGM IYD M+  K DVSTIC+G AASMGAFLL AG+KGKR+C+PN+RVMIHQPLG   G+ATD+ I  RE+
Sbjct:   32 DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREI 156
[Close]
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_ECOLI (ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli (strain K12) GN=clpP PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.027e-39
Identity = 78/125 (62.40%), Postives = 101/125 (80.80%), Query Frame = 1 
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL++R+IFL  QV+D  A+ I++Q+LFL+AE+ +KDI L+INSPGG +TAGM IYD M+  K DVSTIC+G AASMGAFLL AG+KGKR+C+PN+RVMIHQPLG   G+ATD+ I  RE+
Sbjct:   32 DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREI 156
[Close]
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_ECOLC (ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=clpP PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.027e-39
Identity = 78/125 (62.40%), Postives = 101/125 (80.80%), Query Frame = 1 
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL++R+IFL  QV+D  A+ I++Q+LFL+AE+ +KDI L+INSPGG +TAGM IYD M+  K DVSTIC+G AASMGAFLL AG+KGKR+C+PN+RVMIHQPLG   G+ATD+ I  RE+
Sbjct:   32 DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREI 156
[Close]
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_ECOL6 (ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli O6 GN=clpP PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.027e-39
Identity = 78/125 (62.40%), Postives = 101/125 (80.80%), Query Frame = 1 
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL++R+IFL  QV+D  A+ I++Q+LFL+AE+ +KDI L+INSPGG +TAGM IYD M+  K DVSTIC+G AASMGAFLL AG+KGKR+C+PN+RVMIHQPLG   G+ATD+ I  RE+
Sbjct:   32 DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREI 156
[Close]
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_ECOL5 (ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=clpP PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.027e-39
Identity = 78/125 (62.40%), Postives = 101/125 (80.80%), Query Frame = 1 
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL++R+IFL  QV+D  A+ I++Q+LFL+AE+ +KDI L+INSPGG +TAGM IYD M+  K DVSTIC+G AASMGAFLL AG+KGKR+C+PN+RVMIHQPLG   G+ATD+ I  RE+
Sbjct:   32 DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREI 156
[Close]
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_ECOK1 (ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli O1:K1 / APEC GN=clpP PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.027e-39
Identity = 78/125 (62.40%), Postives = 101/125 (80.80%), Query Frame = 1 
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL++R+IFL  QV+D  A+ I++Q+LFL+AE+ +KDI L+INSPGG +TAGM IYD M+  K DVSTIC+G AASMGAFLL AG+KGKR+C+PN+RVMIHQPLG   G+ATD+ I  RE+
Sbjct:   32 DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREI 156
The following BLAST results are available for this feature:
BLAST of FC921493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_SALNS1.027e-3962.40ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SALHS1.027e-3962.40ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SALEP1.027e-3962.40ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SALCH1.027e-3962.40ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ECOUT1.027e-3962.40ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ECOLI1.027e-3962.40ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ECOLC1.027e-3962.40ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ECOL61.027e-3962.40ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ECOL51.027e-3962.40ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ECOK11.027e-3962.40ATP-dependent Clp protease proteolytic subunit OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32105F02EF RVDevelopN Citrus clementina cDNA clone C32105F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921493 ID=FC921493; Name=FC921493; organism=Citrus clementina; type=EST; length=667bp
GAAACCACCCAGCAAACAAATCCAAATAAGAAGATGGAGATGAGTTTGAC
AGCATCTTCATTTTCGAAGCCACTCTTCTTCTCAAACCAATCCCTATCGA
AAACCCACTTTCTCACTGCCGCTAATAACACTAACACTAGCACTACAATC
AAAACGAGGAGACCCACTTGCATAAAGGCCGCGAATAGTTCACCTTCAAT
AGCACAGACCTTGTCTACCAACTGGGATGTCTCCAATTTTGCTGTTAATA
ATAATACTTCATCTCCATATCTGCCCAAATTTGAGGAGCTTGACACCACT
AACATGCTTCTCCGTCAGAGAATTATCTTCTTGGGATCCCAGGTTGATGA
CTTGACTGCTGATTTCATCATAAGTCAGCTCTTATTTCTTGACGCCGAAG
ATTCTAAAAAAGATATCAGGTTGTTTATTAATTCACCTGGTGGCTCTGTT
ACTGCTGGAATGGGAATATATGATGCAATGAAGTTATGCAAGGCTGATGT
TTCAACTATTTGCTTGGGGCTTGCTGCATCTATGGGTGCATTCCTGCTAG
CAGCTGGTTCAAAAGGGAAGAGATATTGCATGCCTAATGCAAGAGTAATG
ATCCATCAACCTCTTGGGACTGCTGGAGGCAAAGCAACAGATATGAGCAT
ACGGATTAGAGAGATGT
back to top